Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Gm25239-201ENSMUST00000174915 86 ntBASIC42.25■■■■■ 4.35
Pcdha4O88689 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC38.87■■■■□ 3.81
Pcdha4O88689 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC38.41■■■■□ 3.74
Pcdha4O88689 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC38.16■■■■□ 3.7
Pcdha4O88689 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC37.31■■■■□ 3.56
Pcdha4O88689 Gm15042-201ENSMUST00000120212 883 ntBASIC37.29■■■■□ 3.56
Pcdha4O88689 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC36.93■■■■□ 3.5
Pcdha4O88689 Gm15045-201ENSMUST00000117359 883 ntBASIC36.53■■■■□ 3.44
Pcdha4O88689 Gm24109-201ENSMUST00000175489 103 ntBASIC36.43■■■■□ 3.42
Pcdha4O88689 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC36.03■■■■□ 3.36
Pcdha4O88689 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC35.79■■■■□ 3.32
Pcdha4O88689 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC35.64■■■■□ 3.3
Pcdha4O88689 Gm23366-201ENSMUST00000175022 89 ntBASIC35.35■■■■□ 3.25
Pcdha4O88689 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC35.34■■■■□ 3.25
Pcdha4O88689 Psd-208ENSMUST00000224556 2034 ntBASIC35.31■■■■□ 3.24
Pcdha4O88689 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC35.31■■■■□ 3.24
Pcdha4O88689 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC35.14■■■■□ 3.22
Pcdha4O88689 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
Pcdha4O88689 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC34.99■■■■□ 3.19
Pcdha4O88689 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC34.87■■■■□ 3.17
Pcdha4O88689 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
Pcdha4O88689 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC34.77■■■■□ 3.16
Pcdha4O88689 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC34.62■■■■□ 3.13
Pcdha4O88689 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC34.56■■■■□ 3.12
Pcdha4O88689 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC34.48■■■■□ 3.11
Pcdha4O88689 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC34.48■■■■□ 3.11
Pcdha4O88689 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC34.47■■■■□ 3.11
Pcdha4O88689 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC34.36■■■■□ 3.09
Pcdha4O88689 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC34.25■■■■□ 3.07
Pcdha4O88689 AC153911.1-202ENSMUST00000218534 1034 ntBASIC34.21■■■■□ 3.07
Pcdha4O88689 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC34.14■■■■□ 3.06
Pcdha4O88689 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC34■■■■□ 3.03
Pcdha4O88689 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC33.9■■■■□ 3.02
Pcdha4O88689 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC33.77■■■■□ 3
Pcdha4O88689 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC33.69■■■□□ 2.98
Pcdha4O88689 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
Pcdha4O88689 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC33.4■■■□□ 2.94
Pcdha4O88689 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC33.39■■■□□ 2.94
Pcdha4O88689 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
Pcdha4O88689 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC33.35■■■□□ 2.93
Pcdha4O88689 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
Pcdha4O88689 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC33.33■■■□□ 2.93
Pcdha4O88689 Gm25238-201ENSMUST00000174914 89 ntBASIC33.22■■■□□ 2.91
Pcdha4O88689 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
Pcdha4O88689 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC33.18■■■□□ 2.9
Pcdha4O88689 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC33.17■■■□□ 2.9
Pcdha4O88689 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
Pcdha4O88689 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC33.03■■■□□ 2.88
Pcdha4O88689 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
Pcdha4O88689 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
Pcdha4O88689 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
Pcdha4O88689 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC32.89■■■□□ 2.86
Pcdha4O88689 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
Pcdha4O88689 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC32.79■■■□□ 2.84
Pcdha4O88689 Gm10524-201ENSMUST00000181931 1893 ntBASIC32.78■■■□□ 2.84
Pcdha4O88689 Gm27325-201ENSMUST00000175467 74 ntBASIC32.76■■■□□ 2.83
Pcdha4O88689 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC32.68■■■□□ 2.82
Pcdha4O88689 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
Pcdha4O88689 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC32.64■■■□□ 2.82
Pcdha4O88689 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
Pcdha4O88689 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
Pcdha4O88689 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
Pcdha4O88689 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC32.53■■■□□ 2.8
Pcdha4O88689 Gdf7-201ENSMUST00000037313 1423 ntAPPRIS P2 TSL 5 BASIC32.48■■■□□ 2.79
Pcdha4O88689 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC32.46■■■□□ 2.79
Pcdha4O88689 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC32.37■■■□□ 2.77
Pcdha4O88689 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC32.31■■■□□ 2.76
Pcdha4O88689 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
Pcdha4O88689 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC32.29■■■□□ 2.76
Pcdha4O88689 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
Pcdha4O88689 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Pcdha4O88689 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
Pcdha4O88689 CT025624.2-201ENSMUST00000223609 1909 ntBASIC32.26■■■□□ 2.75
Pcdha4O88689 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC32.25■■■□□ 2.75
Pcdha4O88689 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC32.22■■■□□ 2.75
Pcdha4O88689 Gm42596-201ENSMUST00000196305 1958 ntBASIC32.14■■■□□ 2.74
Pcdha4O88689 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC32.08■■■□□ 2.73
Pcdha4O88689 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC32.06■■■□□ 2.72
Pcdha4O88689 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
Pcdha4O88689 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC31.96■■■□□ 2.71
Pcdha4O88689 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
Pcdha4O88689 Rab21-202ENSMUST00000218831 843 ntBASIC31.92■■■□□ 2.7
Pcdha4O88689 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC31.88■■■□□ 2.69
Pcdha4O88689 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
Pcdha4O88689 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
Pcdha4O88689 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC31.77■■■□□ 2.68
Pcdha4O88689 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
Pcdha4O88689 Gm25262-201ENSMUST00000174934 133 ntBASIC31.64■■■□□ 2.66
Pcdha4O88689 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.65
Pcdha4O88689 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
Pcdha4O88689 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC31.59■■■□□ 2.65
Pcdha4O88689 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC31.58■■■□□ 2.65
Pcdha4O88689 Fbxo6-203ENSMUST00000105706 1938 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
Pcdha4O88689 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC31.55■■■□□ 2.64
Pcdha4O88689 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
Pcdha4O88689 Vsig8-201ENSMUST00000061835 1801 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
Pcdha4O88689 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC31.44■■■□□ 2.62
Pcdha4O88689 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
Pcdha4O88689 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC31.38■■■□□ 2.61
Pcdha4O88689 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
Retrieved 100 of 76,532 protein–RNA pairs in 12.7 ms