RNA–Protein interactions for RNA: YNL016W

PUB1, Transcript of Poly (A)+ RNA-binding protein, yeast

Gene PUB1, Length 1,362 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PUB1	YNL016W	YHR078W	P38799	552 aa		4	□□□□□ -1.77
PUB1	YNL016W	CTM1	P38818	585 aa		4	□□□□□ -1.77
PUB1	YNL016W	REV7	P38927	245 aa		4	□□□□□ -1.77
PUB1	YNL016W	CHS6	P40955	746 aa		4	□□□□□ -1.77
PUB1	YNL016W	OYE3	P41816	400 aa	Predicted RBP	4	□□□□□ -1.77
PUB1	YNL016W	ALK1	P43633	760 aa	Known RBP	4	□□□□□ -1.77
PUB1	YNL016W	TAM41	P53230	385 aa		4	□□□□□ -1.77
PUB1	YNL016W	YGR111W	P53265	400 aa		4	□□□□□ -1.77
PUB1	YNL016W	YPL108W	Q02872	168 aa	Predicted RBP	4	□□□□□ -1.77
PUB1	YNL016W	ARV1	Q06541	321 aa		4	□□□□□ -1.77
PUB1	YNL016W	MCM21	Q06675	368 aa		4	□□□□□ -1.77
PUB1	YNL016W	TCO89	Q08921	799 aa		4	□□□□□ -1.77
PUB1	YNL016W	LEU9	Q12166	604 aa	Known RBP	4	□□□□□ -1.77
PUB1	YNL016W	RUD3	Q12234	484 aa	Known RBP	4	□□□□□ -1.77
PUB1	YNL016W	CTF3	Q12748	733 aa		4	□□□□□ -1.77
PUB1	YNL016W	YPT6	Q99260	215 aa		4	□□□□□ -1.77
PUB1	YNL016W	CLC1	P17891	233 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	TKL1	P23254	680 aa	Known RBP	3.99	□□□□□ -1.77
PUB1	YNL016W	PHO91	P27514	894 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	URK1	P27515	501 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	BUD14	P27637	709 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	NTG1	P31378	399 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	SPC110	P32380	944 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	GCD7	P32502	381 aa	Predicted RBP	3.99	□□□□□ -1.77
PUB1	YNL016W	AUR1	P36107	401 aa	Predicted RBP	3.99	□□□□□ -1.77
PUB1	YNL016W	CCL1	P37366	393 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	MAL33	P38157	468 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	GDT1	P38301	280 aa	Predicted RBP	3.99	□□□□□ -1.77
PUB1	YNL016W	RRT2	P38332	387 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	ZRG8	P40021	1076 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	YMR147W	P40218	223 aa	Known RBP	3.99	□□□□□ -1.77
PUB1	YNL016W	SEC9	P40357	651 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	SDP1	P40479	209 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	3.99	□□□□□ -1.77	not detected
PUB1	YNL016W	DLD2	P46681	530 aa	Known RBP	3.99	□□□□□ -1.77
PUB1	YNL016W	BIT61	P47041	543 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	IRC8	P47046	822 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	AZR1	P50080	613 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	MLC1	P53141	149 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	ARG5,6	Q01217	863 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	VTC3	Q02725	835 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	KAP120	Q02932	1032 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	CLU1	Q03690	1277 aa	Known RBP	3.99	□□□□□ -1.77
PUB1	YNL016W	SIZ1	Q04195	904 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	EMI2	Q04409	500 aa	Known RBP	3.99	□□□□□ -1.77
PUB1	YNL016W	MSC3	Q05812	728 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	BUD7	Q08754	746 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	SWT1	Q12104	458 aa		3.99	□□□□□ -1.77
PUB1	YNL016W	ERG27	Q12452	347 aa	Known RBP	3.99	□□□□□ -1.77
PUB1	YNL016W	MOT1	P32333	1867 aa		3.98	□□□□□ -1.77
PUB1	YNL016W	YLR358C	O13565	187 aa		3.98	□□□□□ -1.77
PUB1	YNL016W	ERG20	P08524	352 aa	Known RBP	3.98	□□□□□ -1.77
PUB1	YNL016W	MAS2	P11914	482 aa		3.98	□□□□□ -1.77
PUB1	YNL016W	SNA3	P14359	133 aa		3.98	□□□□□ -1.77
PUB1	YNL016W	ADE2	P21264	571 aa	Known RBP	3.98	□□□□□ -1.77
PUB1	YNL016W	SFA1	P32771	386 aa		3.98	□□□□□ -1.77
PUB1	YNL016W	SEC66	P33754	206 aa		3.98	□□□□□ -1.77
PUB1	YNL016W	SEF1	P34228	1148 aa		3.98	□□□□□ -1.77
PUB1	YNL016W	MCR1	P36060	302 aa	Known RBP	3.98	□□□□□ -1.77
PUB1	YNL016W	TVP23	P38962	199 aa		3.98	□□□□□ -1.77
PUB1	YNL016W	PFA3	P42836	336 aa		3.98	□□□□□ -1.77
PUB1	YNL016W	MET12	P46151	657 aa		3.98	□□□□□ -1.77
PUB1	YNL016W	BPL1	P48445	690 aa	Predicted RBP	3.98	□□□□□ -1.77
PUB1	YNL016W	APT1	P49435	187 aa	Known RBP	3.98	□□□□□ -1.77
PUB1	YNL016W	KEL2	P50090	882 aa		3.98	□□□□□ -1.77
PUB1	YNL016W	REC102	Q02721	264 aa		3.98	□□□□□ -1.77
PUB1	YNL016W	KAP95	Q06142	861 aa	Known RBP	3.98	□□□□□ -1.77
PUB1	YNL016W	PEX19	Q07418	342 aa		3.98	□□□□□ -1.77
PUB1	YNL016W	SGO1	Q08490	590 aa		3.98	□□□□□ -1.77
PUB1	YNL016W	UAF30	Q08747	228 aa		3.98	□□□□□ -1.77
PUB1	YNL016W	LYS21	Q12122	440 aa	Known RBP	3.98	□□□□□ -1.77
PUB1	YNL016W	NCB2	Q92317	146 aa		3.98	□□□□□ -1.77
PUB1	YNL016W	RAD61	Q99359	647 aa		3.98	□□□□□ -1.77
PUB1	YNL016W	MYO1	P08964	1928 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	ARO3	P14843	370 aa	Known RBP	3.97	□□□□□ -1.77
PUB1	YNL016W	PUT4	P15380	627 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	MRPL25	P23369	157 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	AFG1	P32317	509 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	CMC1	P36064	111 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	THI2	P38141	450 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	TIF5	P38431	405 aa	Known RBP	3.97	□□□□□ -1.77
PUB1	YNL016W	SIC1	P38634	284 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	YHL012W	P38709	493 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	ERC1	P38767	581 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	YNG2	P38806	282 aa	Known RBP	3.97	□□□□□ -1.77
PUB1	YNL016W	SFB3	P38810	929 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	SAK1	P38990	1142 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	NUP60	P39705	539 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	FTR1	P40088	404 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	PKP1	P40530	394 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	RAD17	P48581	401 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	PRP31	P49704	494 aa	Predicted RBP	3.97	□□□□□ -1.77
PUB1	YNL016W	YGL242C	P53066	181 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	LCL3	P53153	274 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	YGR012W	P53206	393 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	TWF1	P53250	332 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	DSE4	P53753	1117 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	ASI2	P53895	289 aa		3.97	□□□□□ -1.77
PUB1	YNL016W	EGD1	Q02642	157 aa	Known RBP	3.97	□□□□□ -1.77
PUB1	YNL016W	MSC2	Q03455	724 aa		3.97	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 12.1 ms