RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 OTOFQ9HC10 1997 aa21.12■□□□□ 0.97
CLN3-254ENST00000637050 POTEIP0CG38 1075 aa21.12■□□□□ 0.97
CLN3-254ENST00000637050 POTEJP0CG39 1038 aa21.12■□□□□ 0.97
CLN3-254ENST00000637050 STK38Q15208 465 aa21.12■□□□□ 0.97
CLN3-254ENST00000637050 PTPAQ15257 358 aa21.12■□□□□ 0.97
CLN3-254ENST00000637050 MAP3K11Q16584 847 aa21.12■□□□□ 0.97
CLN3-254ENST00000637050 KCNG4Q8TDN1 519 aa21.12■□□□□ 0.97
CLN3-254ENST00000637050 C19orf81C9J6K1 198 aa21.11■□□□□ 0.97
CLN3-254ENST00000637050 PIK3AP1Q6ZUJ8 805 aa21.11■□□□□ 0.97
CLN3-254ENST00000637050 BICD2Q8TD16 824 aa21.11■□□□□ 0.97
CLN3-254ENST00000637050 C12orf42Q96LP6 360 aa21.11■□□□□ 0.97
CLN3-254ENST00000637050 AMNQ9BXJ7 453 aa21.11■□□□□ 0.97
CLN3-254ENST00000637050 RRAGCQ9HB90 399 aa21.11■□□□□ 0.97
CLN3-254ENST00000637050 NOL7Q9UMY1 257 aaKnown RBP21.11■□□□□ 0.97
CLN3-254ENST00000637050 CLEC11AQ9Y240 323 aa21.11■□□□□ 0.97
CLN3-254ENST00000637050 AFG3L2Q9Y4W6 797 aa21.11■□□□□ 0.97
CLN3-254ENST00000637050 CSADQ9Y600 493 aa21.11■□□□□ 0.97
CLN3-254ENST00000637050 DCAF8L1A6NGE4 600 aa21.1■□□□□ 0.97
CLN3-254ENST00000637050 SPTLC2O15270 562 aa21.1■□□□□ 0.97
CLN3-254ENST00000637050 VCAM1P19320 739 aa21.1■□□□□ 0.97
CLN3-254ENST00000637050 TRAPPC10P48553 1259 aa21.1■□□□□ 0.97
CLN3-254ENST00000637050 ADCY7P51828 1080 aa21.1■□□□□ 0.97
CLN3-254ENST00000637050 FBXO11Q86XK2 927 aa21.1■□□□□ 0.97
CLN3-254ENST00000637050 RASGRP4Q8TDF6 673 aa21.1■□□□□ 0.97
CLN3-254ENST00000637050 RANBP17Q9H2T7 1088 aaKnown RBP21.1■□□□□ 0.97
CLN3-254ENST00000637050 RIC8AQ9NPQ8 531 aa21.1■□□□□ 0.97
CLN3-254ENST00000637050 PCDHA1Q9Y5I3 950 aa21.1■□□□□ 0.97
CLN3-254ENST00000637050 TRIM75PA6NK02 468 aa21.09■□□□□ 0.97
CLN3-254ENST00000637050 SNAP25P60880 206 aa21.09■□□□□ 0.97
CLN3-254ENST00000637050 DGKZQ13574 1117 aa21.09■□□□□ 0.97
CLN3-254ENST00000637050 FBXO28Q9NVF7 368 aa21.09■□□□□ 0.97
CLN3-254ENST00000637050 PCDHB6Q9Y5E3 794 aa21.09■□□□□ 0.97
CLN3-254ENST00000637050 CCDC194A0A1B0GVG4 234 aa21.09■□□□□ 0.97
CLN3-254ENST00000637050 GOLGA6L4A6NEF3 574 aa21.09■□□□□ 0.97
CLN3-254ENST00000637050 PPP6R2O75170 966 aa21.09■□□□□ 0.97
CLN3-254ENST00000637050 ME1P48163 572 aa21.09■□□□□ 0.97
CLN3-254ENST00000637050 KRT25Q7Z3Z0 450 aa21.09■□□□□ 0.97
CLN3-254ENST00000637050 ANKRD13AQ8IZ07 590 aa21.09■□□□□ 0.97
CLN3-254ENST00000637050 KIFC2Q96AC6 838 aa21.09■□□□□ 0.97
CLN3-254ENST00000637050 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.09■□□□□ 0.97
CLN3-254ENST00000637050 PCDHA7Q9UN72 937 aa21.09■□□□□ 0.97
CLN3-254ENST00000637050 MAP1SQ66K74 1059 aaPredicted RBP21.08■□□□□ 0.96
CLN3-254ENST00000637050 REXO1Q8N1G1 1221 aaKnown RBP21.08■□□□□ 0.96
CLN3-254ENST00000637050 PRPF38AQ8NAV1 312 aaKnown RBP21.08■□□□□ 0.96
CLN3-254ENST00000637050 SLF1Q9BQI6 1058 aa21.08■□□□□ 0.96
CLN3-254ENST00000637050 GLT8D2Q9H1C3 349 aa21.08■□□□□ 0.96
CLN3-254ENST00000637050 MORC2Q9Y6X9 1032 aaPredicted RBP21.08■□□□□ 0.96
CLN3-254ENST00000637050 TRAF1Q13077 416 aa21.07■□□□□ 0.96
CLN3-254ENST00000637050 SH3D19Q5HYK7 790 aa21.07■□□□□ 0.96
CLN3-254ENST00000637050 ADALQ6DHV7 355 aa21.07■□□□□ 0.96
CLN3-254ENST00000637050 RBM46Q8TBY0 533 aaKnown RBP21.07■□□□□ 0.96
CLN3-254ENST00000637050 CUL5Q93034 780 aa21.07■□□□□ 0.96
CLN3-254ENST00000637050 RPAP3Q9H6T3 665 aaPredicted RBP21.07■□□□□ 0.96
CLN3-254ENST00000637050 PSTPIP2Q9H939 334 aa21.07■□□□□ 0.96
CLN3-254ENST00000637050 CEP131Q9UPN4 1083 aa21.07■□□□□ 0.96
CLN3-254ENST00000637050 WNT7AO00755 349 aa21.06■□□□□ 0.96
CLN3-254ENST00000637050 ATP2B1P20020 1258 aa21.06■□□□□ 0.96
CLN3-254ENST00000637050 CLK2P49760 499 aaKnown RBP21.06■□□□□ 0.96
CLN3-254ENST00000637050 MRPL12P52815 198 aaKnown RBP21.06■□□□□ 0.96
CLN3-254ENST00000637050 HMGCS2P54868 508 aa21.06■□□□□ 0.96
CLN3-254ENST00000637050 TTLL12Q14166 644 aaPredicted RBP21.06■□□□□ 0.96
CLN3-254ENST00000637050 TTC38Q5R3I4 469 aa21.06■□□□□ 0.96
CLN3-254ENST00000637050 CAVIN1Q6NZI2 390 aaKnown RBP21.06■□□□□ 0.96
CLN3-254ENST00000637050 MOB2Q70IA6 237 aa21.06■□□□□ 0.96
CLN3-254ENST00000637050 ARMC9Q7Z3E5 817 aa21.06■□□□□ 0.96
CLN3-254ENST00000637050 LDHDQ86WU2 507 aa21.06■□□□□ 0.96
CLN3-254ENST00000637050 JMYQ8N9B5 988 aa21.06■□□□□ 0.96
CLN3-254ENST00000637050 TANGO6Q9C0B7 1094 aa21.06■□□□□ 0.96
CLN3-254ENST00000637050 TPRNQ4KMQ1 711 aa21.05■□□□□ 0.96
CLN3-254ENST00000637050 BIN2Q9UBW5 565 aaPredicted RBP21.05■□□□□ 0.96
CLN3-254ENST00000637050 A0A1W2PQ27 194 aa21.05■□□□□ 0.96
CLN3-254ENST00000637050 A0A1W2PQ64 194 aa21.05■□□□□ 0.96
CLN3-254ENST00000637050 A0A1W2PQD8 194 aa21.05■□□□□ 0.96
CLN3-254ENST00000637050 BMP15O95972 392 aa21.05■□□□□ 0.96
CLN3-254ENST00000637050 MARCKSP29966 332 aaPredicted RBP21.05■□□□□ 0.96
CLN3-254ENST00000637050 PPATQ06203 517 aa21.05■□□□□ 0.96
CLN3-254ENST00000637050 NONOQ15233 471 aaKnown RBP eCLIP21.05■□□□□ 0.96
CLN3-254ENST00000637050 USH1GQ495M9 461 aa21.05■□□□□ 0.96
CLN3-254ENST00000637050 AXDND1Q5T1B0 1012 aaPredicted RBP21.05■□□□□ 0.96
CLN3-254ENST00000637050 ERO1BQ86YB8 467 aa21.05■□□□□ 0.96
CLN3-254ENST00000637050 CLMNQ96JQ2 1002 aa21.05■□□□□ 0.96
CLN3-254ENST00000637050 GZF1Q9H116 711 aaPredicted RBP21.05■□□□□ 0.96
CLN3-254ENST00000637050 ELP3Q9H9T3 547 aa21.05■□□□□ 0.96
CLN3-254ENST00000637050 TMEM260Q9NX78 707 aa21.05■□□□□ 0.96
CLN3-254ENST00000637050 TMEM63CQ9P1W3 806 aa21.05■□□□□ 0.96
CLN3-254ENST00000637050 PPP1R9AQ9ULJ8 1098 aa21.05■□□□□ 0.96
CLN3-254ENST00000637050 SPDYE5A6NIY4 337 aa21.04■□□□□ 0.96
CLN3-254ENST00000637050 TRAF5O00463 557 aa21.04■□□□□ 0.96
CLN3-254ENST00000637050 INF2Q27J81 1249 aa21.04■□□□□ 0.96
CLN3-254ENST00000637050 LDLRAD1Q5T700 205 aa21.04■□□□□ 0.96
CLN3-254ENST00000637050 JAKMIP3Q5VZ66 844 aa21.04■□□□□ 0.96
CLN3-254ENST00000637050 CNKSR2Q8WXI2 1034 aa21.04■□□□□ 0.96
CLN3-254ENST00000637050 NMRK2Q9NPI5 230 aa21.04■□□□□ 0.96
CLN3-254ENST00000637050 TMOD4Q9NZQ9 345 aa21.04■□□□□ 0.96
CLN3-254ENST00000637050 FLOT1O75955 427 aa21.03■□□□□ 0.96
CLN3-254ENST00000637050 LIG1P18858 919 aa21.03■□□□□ 0.96
CLN3-254ENST00000637050 ZNF174Q15697 407 aa21.03■□□□□ 0.96
CLN3-254ENST00000637050 CCDC174Q6PII3 467 aa21.03■□□□□ 0.96
CLN3-254ENST00000637050 TEX2Q8IWB9 1127 aa21.03■□□□□ 0.96
CLN3-254ENST00000637050 PARP14Q460N5 1801 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms