RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 PTPAQ15257 358 aa23.06■■□□□ 1.28
CLN3-250ENST00000636839 CSPP1Q1MSJ5 1256 aa23.06■■□□□ 1.28
CLN3-250ENST00000636839 CAVIN1Q6NZI2 390 aaKnown RBP23.06■■□□□ 1.28
CLN3-250ENST00000636839 BACE1P56817 501 aa23.06■■□□□ 1.28
CLN3-250ENST00000636839 USH1GQ495M9 461 aa23.06■■□□□ 1.28
CLN3-250ENST00000636839 NOL9Q5SY16 702 aaKnown RBP23.06■■□□□ 1.28
CLN3-250ENST00000636839 NMRK2Q9NPI5 230 aa23.06■■□□□ 1.28
CLN3-250ENST00000636839 BIN2Q9UBW5 565 aaPredicted RBP23.06■■□□□ 1.28
CLN3-250ENST00000636839 PCDHA7Q9UN72 937 aa23.06■■□□□ 1.28
CLN3-250ENST00000636839 PCDHA1Q9Y5I3 950 aa23.06■■□□□ 1.28
CLN3-250ENST00000636839 VCAM1P19320 739 aa23.05■■□□□ 1.28
CLN3-250ENST00000636839 ME1P48163 572 aa23.05■■□□□ 1.28
CLN3-250ENST00000636839 HMGCS2P54868 508 aa23.05■■□□□ 1.28
CLN3-250ENST00000636839 TTLL12Q14166 644 aaPredicted RBP23.05■■□□□ 1.28
CLN3-250ENST00000636839 DAGLBQ8NCG7 672 aa23.05■■□□□ 1.28
CLN3-250ENST00000636839 RILPL1Q5EBL4 403 aa23.04■■□□□ 1.28
CLN3-250ENST00000636839 CCDC174Q6PII3 467 aa23.04■■□□□ 1.28
CLN3-250ENST00000636839 C6orf50Q9HD87 102 aa23.04■■□□□ 1.28
CLN3-250ENST00000636839 AFG3L2Q9Y4W6 797 aa23.04■■□□□ 1.28
CLN3-250ENST00000636839 SPTLC2O15270 562 aa23.04■■□□□ 1.28
CLN3-250ENST00000636839 LIG1P18858 919 aa23.04■■□□□ 1.28
CLN3-250ENST00000636839 SLC39A14Q15043 492 aa23.04■■□□□ 1.28
CLN3-250ENST00000636839 JAKMIP3Q5VZ66 844 aa23.04■■□□□ 1.28
CLN3-250ENST00000636839 CCDC12Q8WUD4 166 aaPredicted RBP23.04■■□□□ 1.28
CLN3-250ENST00000636839 ELP3Q9H9T3 547 aa23.04■■□□□ 1.28
CLN3-250ENST00000636839 TMEM63CQ9P1W3 806 aa23.04■■□□□ 1.28
CLN3-250ENST00000636839 YEATS4O95619 227 aa23.03■■□□□ 1.28
CLN3-250ENST00000636839 ZNF174Q15697 407 aa23.03■■□□□ 1.28
CLN3-250ENST00000636839 UBE2SQ16763 222 aa23.03■■□□□ 1.28
CLN3-250ENST00000636839 TANGO6Q9C0B7 1094 aa23.03■■□□□ 1.28
CLN3-250ENST00000636839 ZNF408Q9H9D4 720 aa23.03■■□□□ 1.28
CLN3-250ENST00000636839 AS3MTQ9HBK9 375 aa23.03■■□□□ 1.28
CLN3-250ENST00000636839 FEM1BQ9UK73 627 aa23.03■■□□□ 1.28
CLN3-250ENST00000636839 CHURC1Q8WUH1 139 aa23.03■■□□□ 1.28
CLN3-250ENST00000636839 LPAR1Q92633 364 aa23.03■■□□□ 1.28
CLN3-250ENST00000636839 RPAP3Q9H6T3 665 aaPredicted RBP23.03■■□□□ 1.28
CLN3-250ENST00000636839 SMCHD1A6NHR9 2005 aa23.02■■□□□ 1.28
CLN3-250ENST00000636839 PHIPQ8WWQ0 1821 aa23.02■■□□□ 1.28
CLN3-250ENST00000636839 hCG_1984214I3L0E3 225 aa23.02■■□□□ 1.28
CLN3-250ENST00000636839 WDR46O15213 610 aaKnown RBP23.02■■□□□ 1.28
CLN3-250ENST00000636839 GNA11P29992 359 aa23.02■■□□□ 1.28
CLN3-250ENST00000636839 IREB2P48200 963 aaKnown RBP23.02■■□□□ 1.28
CLN3-250ENST00000636839 ADCY7P51828 1080 aa23.02■■□□□ 1.28
CLN3-250ENST00000636839 INF2Q27J81 1249 aa23.02■■□□□ 1.28
CLN3-250ENST00000636839 GALNT17Q6IS24 598 aa23.02■■□□□ 1.28
CLN3-250ENST00000636839 FBXO11Q86XK2 927 aa23.02■■□□□ 1.28
CLN3-250ENST00000636839 ZNF713Q8N859 430 aaPredicted RBP23.02■■□□□ 1.28
CLN3-250ENST00000636839 AMNQ9BXJ7 453 aa23.02■■□□□ 1.28
CLN3-250ENST00000636839 ESYT2A0FGR8 921 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 GOLGA6L4A6NEF3 574 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 MBD3O95983 291 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 NF2P35240 595 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 CSADQ9Y600 493 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 CCDC194A0A1B0GVG4 234 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 USP17L15C9J2P7 530 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 USP17L13C9JLJ4 530 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 USP17L11C9JVI0 530 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 USP17L18D6R9N7 530 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 USP17L22D6RA61 530 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 USP17L17D6RBQ6 530 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 USP17L19D6RCP7 530 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 USP17L20D6RJB6 530 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 USP17L24Q0WX57 530 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 USP17L6PQ6QN14 398 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 CLIC6Q96NY7 704 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 RANBP17Q9H2T7 1088 aaKnown RBP23.01■■□□□ 1.27
CLN3-250ENST00000636839 GOLPH3LQ9H4A5 285 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 PSTPIP2Q9H939 334 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 RIC8AQ9NPQ8 531 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 OTOFQ9HC10 1997 aa23.01■■□□□ 1.27
CLN3-250ENST00000636839 USP14P54578 494 aa23■■□□□ 1.27
CLN3-250ENST00000636839 GRIN1Q05586 938 aa23■■□□□ 1.27
CLN3-250ENST00000636839 TTC38Q5R3I4 469 aa23■■□□□ 1.27
CLN3-250ENST00000636839 AXDND1Q5T1B0 1012 aaPredicted RBP23■■□□□ 1.27
CLN3-250ENST00000636839 REXO1Q8N1G1 1221 aaKnown RBP23■■□□□ 1.27
CLN3-250ENST00000636839 BICD2Q8TD16 824 aa23■■□□□ 1.27
CLN3-250ENST00000636839 KCNG4Q8TDN1 519 aa23■■□□□ 1.27
CLN3-250ENST00000636839 WNK4Q96J92 1243 aa23■■□□□ 1.27
CLN3-250ENST00000636839 OPLAHO14841 1288 aa22.99■■□□□ 1.27
CLN3-250ENST00000636839 PLA2G6O60733 806 aa22.99■■□□□ 1.27
CLN3-250ENST00000636839 FLOT1O75955 427 aa22.99■■□□□ 1.27
CLN3-250ENST00000636839 FAM160B2Q86V87 743 aa22.99■■□□□ 1.27
CLN3-250ENST00000636839 OTUD5Q96G74 571 aa22.99■■□□□ 1.27
CLN3-250ENST00000636839 SLF1Q9BQI6 1058 aa22.99■■□□□ 1.27
CLN3-250ENST00000636839 EIF4ENIF1Q9NRA8 985 aaKnown RBP22.99■■□□□ 1.27
CLN3-250ENST00000636839 PAPPA2Q9BXP8 1791 aa22.99■■□□□ 1.27
CLN3-250ENST00000636839 FAM177A1Q8N128 213 aaPredicted RBP22.99■■□□□ 1.27
CLN3-250ENST00000636839 P2RX7Q99572 595 aaKnown RBP22.99■■□□□ 1.27
CLN3-250ENST00000636839 IRF6O14896 467 aa22.98■■□□□ 1.27
CLN3-250ENST00000636839 MCM7P33993 719 aa22.98■■□□□ 1.27
CLN3-250ENST00000636839 PPP1R18Q6NYC8 613 aa22.98■■□□□ 1.27
CLN3-250ENST00000636839 CCAR1Q8IX12 1150 aaKnown RBP22.98■■□□□ 1.27
CLN3-250ENST00000636839 PRPF38AQ8NAV1 312 aaKnown RBP22.98■■□□□ 1.27
CLN3-250ENST00000636839 AGBL1Q96MI9 1066 aa22.98■■□□□ 1.27
CLN3-250ENST00000636839 NOL7Q9UMY1 257 aaKnown RBP22.98■■□□□ 1.27
CLN3-250ENST00000636839 EDIL3O43854 480 aa22.98■■□□□ 1.27
CLN3-250ENST00000636839 ANKRD13AQ8IZ07 590 aa22.98■■□□□ 1.27
CLN3-250ENST00000636839 TBC1D5Q92609 795 aa22.98■■□□□ 1.27
CLN3-250ENST00000636839 CUL5Q93034 780 aa22.98■■□□□ 1.27
CLN3-250ENST00000636839 ZNF536O15090 1300 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms