RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 ZHX1Q9UKY1 873 aaPredicted RBP21.82■■□□□ 1.08
CLN3-241ENST00000635861 STX8Q9UNK0 236 aa21.82■■□□□ 1.08
CLN3-241ENST00000635861 LRRC37A2A6NM11 1700 aa21.82■■□□□ 1.08
CLN3-241ENST00000635861 POTEB2H3BUK9 544 aa21.81■■□□□ 1.08
CLN3-241ENST00000635861 CLTBP09497 229 aa21.81■■□□□ 1.08
CLN3-241ENST00000635861 FGRP09769 529 aa21.81■■□□□ 1.08
CLN3-241ENST00000635861 NOVP48745 357 aa21.81■■□□□ 1.08
CLN3-241ENST00000635861 SLC4A3P48751 1232 aa21.81■■□□□ 1.08
CLN3-241ENST00000635861 RCSD1Q6JBY9 416 aa21.81■■□□□ 1.08
CLN3-241ENST00000635861 SLC17A8Q8NDX2 589 aa21.81■■□□□ 1.08
CLN3-241ENST00000635861 CRBNQ96SW2 442 aa21.81■■□□□ 1.08
CLN3-241ENST00000635861 SPC25Q9HBM1 224 aa21.81■■□□□ 1.08
CLN3-241ENST00000635861 ZMYM6O95789 1325 aa21.81■■□□□ 1.08
CLN3-241ENST00000635861 ACLYP53396 1101 aa21.8■■□□□ 1.08
CLN3-241ENST00000635861 CCDC129Q6ZRS4 1044 aa21.8■■□□□ 1.08
CLN3-241ENST00000635861 Q7L0L9 218 aa21.8■■□□□ 1.08
CLN3-241ENST00000635861 ANKRD33Q7Z3H0 272 aa21.8■■□□□ 1.08
CLN3-241ENST00000635861 PCSK9Q8NBP7 692 aaKnown RBP21.8■■□□□ 1.08
CLN3-241ENST00000635861 BADQ92934 168 aa21.8■■□□□ 1.08
CLN3-241ENST00000635861 LCTP09848 1927 aa21.8■■□□□ 1.08
CLN3-241ENST00000635861 MROH7Q68CQ1 1323 aa21.8■■□□□ 1.08
CLN3-241ENST00000635861 LAMA4Q16363 1823 aa21.8■■□□□ 1.08
CLN3-241ENST00000635861 KIAA0355O15063 1070 aa21.8■■□□□ 1.08
CLN3-241ENST00000635861 CTDSPL2Q05D32 466 aa21.8■■□□□ 1.08
CLN3-241ENST00000635861 IKQ13123 557 aaPredicted RBP21.8■■□□□ 1.08
CLN3-241ENST00000635861 CCSAPQ6IQ19 270 aaPredicted RBP21.8■■□□□ 1.08
CLN3-241ENST00000635861 ARMCX2Q7L311 632 aa21.8■■□□□ 1.08
CLN3-241ENST00000635861 FGD4Q96M96 766 aa21.8■■□□□ 1.08
CLN3-241ENST00000635861 STARD7Q9NQZ5 370 aa21.8■■□□□ 1.08
CLN3-241ENST00000635861 IL17RBQ9NRM6 502 aa21.8■■□□□ 1.08
CLN3-241ENST00000635861 ISY1Q9ULR0 285 aaKnown RBP21.8■■□□□ 1.08
CLN3-241ENST00000635861 ZNF536O15090 1300 aa21.79■■□□□ 1.08
CLN3-241ENST00000635861 ELP1O95163 1332 aa21.79■■□□□ 1.08
CLN3-241ENST00000635861 TRIM43BA6NCK2 446 aa21.79■■□□□ 1.08
CLN3-241ENST00000635861 RANBP6O60518 1105 aaKnown RBP21.79■■□□□ 1.08
CLN3-241ENST00000635861 MCCP23508 829 aa21.79■■□□□ 1.08
CLN3-241ENST00000635861 MCMDC2Q4G0Z9 681 aa21.79■■□□□ 1.08
CLN3-241ENST00000635861 FAM133AQ8N9E0 248 aa21.79■■□□□ 1.08
CLN3-241ENST00000635861 DCAF4Q8WV16 495 aa21.79■■□□□ 1.08
CLN3-241ENST00000635861 TRIM43Q96BQ3 446 aaPredicted RBP21.79■■□□□ 1.08
CLN3-241ENST00000635861 UPF3AQ9H1J1 476 aaKnown RBP21.79■■□□□ 1.08
CLN3-241ENST00000635861 RNF146Q9NTX7 359 aa21.79■■□□□ 1.08
CLN3-241ENST00000635861 ASB14A6NK59 587 aa21.78■■□□□ 1.08
CLN3-241ENST00000635861 PCP11498 1178 aaKnown RBP21.78■■□□□ 1.08
CLN3-241ENST00000635861 GJA9P57773 515 aa21.78■■□□□ 1.08
CLN3-241ENST00000635861 NKX3-2P78367 333 aa21.78■■□□□ 1.08
CLN3-241ENST00000635861 CCDC144BQ3MJ40 725 aa21.78■■□□□ 1.08
CLN3-241ENST00000635861 SH3RF1Q7Z6J0 888 aa21.78■■□□□ 1.08
CLN3-241ENST00000635861 LENG1Q96BZ8 264 aaPredicted RBP21.78■■□□□ 1.08
CLN3-241ENST00000635861 GLT1D1Q96MS3 346 aa21.78■■□□□ 1.08
CLN3-241ENST00000635861 A1CFQ9NQ94 594 aaKnown RBP21.78■■□□□ 1.08
CLN3-241ENST00000635861 HOMER2Q9NSB8 354 aa21.78■■□□□ 1.08
CLN3-241ENST00000635861 DCDC2CA8MYV0 355 aa21.77■■□□□ 1.08
CLN3-241ENST00000635861 SHHQ15465 462 aa21.77■■□□□ 1.08
CLN3-241ENST00000635861 KCNA10Q16322 511 aa21.77■■□□□ 1.08
CLN3-241ENST00000635861 VPS53Q5VIR6 699 aa21.77■■□□□ 1.08
CLN3-241ENST00000635861 CCDC144CPQ8IYA2 1237 aa21.77■■□□□ 1.08
CLN3-241ENST00000635861 TCP11L1Q9NUJ3 509 aa21.77■■□□□ 1.08
CLN3-241ENST00000635861 PQBP1O60828 265 aaKnown RBP21.76■■□□□ 1.07
CLN3-241ENST00000635861 C6orf222P0C671 652 aaPredicted RBP21.76■■□□□ 1.07
CLN3-241ENST00000635861 RAG1P15918 1043 aa21.76■■□□□ 1.07
CLN3-241ENST00000635861 NT5C2P49902 561 aa21.76■■□□□ 1.07
CLN3-241ENST00000635861 SMAD3P84022 425 aaKnown RBP21.76■■□□□ 1.07
CLN3-241ENST00000635861 ZNF697Q5TEC3 545 aa21.76■■□□□ 1.07
CLN3-241ENST00000635861 AGBL1Q96MI9 1066 aa21.76■■□□□ 1.07
CLN3-241ENST00000635861 TRERF1Q96PN7 1200 aa21.76■■□□□ 1.07
CLN3-241ENST00000635861 KATNBL1Q9H079 304 aa21.76■■□□□ 1.07
CLN3-241ENST00000635861 PRR12Q9ULL5 1215 aa21.76■■□□□ 1.07
CLN3-241ENST00000635861 CUL9Q8IWT3 2517 aa21.76■■□□□ 1.07
CLN3-241ENST00000635861 FGAP02671 866 aa21.75■■□□□ 1.07
CLN3-241ENST00000635861 MFAP1P55081 439 aaKnown RBP21.75■■□□□ 1.07
CLN3-241ENST00000635861 KCTD1Q719H9 257 aa21.75■■□□□ 1.07
CLN3-241ENST00000635861 TMEM39AQ9NV64 488 aa21.75■■□□□ 1.07
CLN3-241ENST00000635861 PNMA2Q9UL42 364 aa21.75■■□□□ 1.07
CLN3-241ENST00000635861 LOC102724159A0A0B4J2E5 919 aa21.74■■□□□ 1.07
CLN3-241ENST00000635861 NMT2O60551 498 aa21.74■■□□□ 1.07
CLN3-241ENST00000635861 HSPD1P10809 573 aaKnown RBP21.74■■□□□ 1.07
CLN3-241ENST00000635861 ALAS1P13196 640 aa21.74■■□□□ 1.07
CLN3-241ENST00000635861 FAAP100Q0VG06 881 aa21.74■■□□□ 1.07
CLN3-241ENST00000635861 PWP2Q15269 919 aaKnown RBP21.74■■□□□ 1.07
CLN3-241ENST00000635861 C9orf50Q5SZB4 431 aa21.74■■□□□ 1.07
CLN3-241ENST00000635861 BTNL9Q6UXG8 535 aa21.74■■□□□ 1.07
CLN3-241ENST00000635861 UNC80Q8N2C7 3258 aa21.74■■□□□ 1.07
CLN3-241ENST00000635861 A0A0D9SFI3 127 aa21.73■■□□□ 1.07
CLN3-241ENST00000635861 ICAM1P05362 532 aa21.73■■□□□ 1.07
CLN3-241ENST00000635861 ASGR1P07306 291 aa21.73■■□□□ 1.07
CLN3-241ENST00000635861 TOP1P11387 765 aaKnown RBP21.73■■□□□ 1.07
CLN3-241ENST00000635861 CNTN2Q02246 1040 aa21.73■■□□□ 1.07
CLN3-241ENST00000635861 FPGSQ05932 587 aa21.73■■□□□ 1.07
CLN3-241ENST00000635861 SMC5Q8IY18 1101 aa21.73■■□□□ 1.07
CLN3-241ENST00000635861 FAM227BQ96M60 508 aa21.73■■□□□ 1.07
CLN3-241ENST00000635861 SEZ6LQ9BYH1 1024 aa21.73■■□□□ 1.07
CLN3-241ENST00000635861 RANBP17Q9H2T7 1088 aaKnown RBP21.73■■□□□ 1.07
CLN3-241ENST00000635861 RWDD1Q9H446 243 aaPredicted RBP21.73■■□□□ 1.07
CLN3-241ENST00000635861 INCENPQ9NQS7 918 aa21.73■■□□□ 1.07
CLN3-241ENST00000635861 MYH6P13533 1939 aa21.73■■□□□ 1.07
CLN3-241ENST00000635861 CCDC171Q6TFL3 1326 aa21.73■■□□□ 1.07
CLN3-241ENST00000635861 A0A0U1RQG5 324 aaPredicted RBP21.72■■□□□ 1.07
CLN3-241ENST00000635861 ADCY6O43306 1168 aa21.72■■□□□ 1.07
CLN3-241ENST00000635861 CDK7P50613 346 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms