RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 ADGRA2Q96PE1 1338 aa10.99□□□□□ -0.65
PDLIM5-223ENST00000627587 hCG_1642624A0A1W2PR95 340 aa10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 PALM3A6NDB9 673 aaPredicted RBP10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 C19orf67A6NJJ6 358 aa10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 CYTH3O43739 400 aa10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 KLHL40Q2TBA0 621 aa10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 SKOR2Q2VWA4 1001 aaPredicted RBP10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 CTCFLQ8NI51 663 aaPredicted RBP10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 WASF1Q92558 559 aa10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 FTOQ9C0B1 505 aaKnown RBP eCLIP10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 PICK1Q9NRD5 415 aa10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 TAOK2Q9UL54 1235 aa10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 MYPNQ86TC9 1320 aa10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 H0YGN5 161 aa10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 PRPF3O43395 683 aaKnown RBP10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 FIBPO43427 364 aa10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 DEXIO95424 95 aa10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 TOP1P11387 765 aaKnown RBP10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 GJA8P48165 433 aa10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 MAP3K10Q02779 954 aa10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 MOGSQ13724 837 aa10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 SIAH1Q8IUQ4 282 aa10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 FOXP4Q8IVH2 680 aaPredicted RBP10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 SLAIN1Q8ND83 568 aa10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 DPF3Q92784 378 aa10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 TRIM34Q9BYJ4 488 aa10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 TFIP11Q9UBB9 837 aaKnown RBP10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 BIN2Q9UBW5 565 aaPredicted RBP10.98□□□□□ -0.65
PDLIM5-223ENST00000627587 MYCP01106 439 aaPredicted RBP10.97□□□□□ -0.65
PDLIM5-223ENST00000627587 SNHG28P0DPA3 235 aa10.97□□□□□ -0.65
PDLIM5-223ENST00000627587 BCRP11274 1271 aa10.97□□□□□ -0.65
PDLIM5-223ENST00000627587 NCLP19338 710 aaKnown RBP10.97□□□□□ -0.65
PDLIM5-223ENST00000627587 KIF5BP33176 963 aa10.97□□□□□ -0.65
PDLIM5-223ENST00000627587 NPY5RQ15761 445 aa10.97□□□□□ -0.65
PDLIM5-223ENST00000627587 CSPP1Q1MSJ5 1256 aa10.97□□□□□ -0.65
PDLIM5-223ENST00000627587 GPAT2Q6NUI2 795 aa10.97□□□□□ -0.65
PDLIM5-223ENST00000627587 SCYL3Q8IZE3 742 aa10.97□□□□□ -0.65
PDLIM5-223ENST00000627587 NR2E3Q9Y5X4 410 aa10.97□□□□□ -0.65
PDLIM5-223ENST00000627587 V9GY48 417 aaPredicted RBP10.97□□□□□ -0.65
PDLIM5-223ENST00000627587 A0A0G2JLL6 359 aaPredicted RBP10.96□□□□□ -0.65
PDLIM5-223ENST00000627587 CTNND1O60716 968 aaKnown RBP10.96□□□□□ -0.65
PDLIM5-223ENST00000627587 MMP1P03956 469 aa10.96□□□□□ -0.65
PDLIM5-223ENST00000627587 PDHBP11177 359 aa10.96□□□□□ -0.65
PDLIM5-223ENST00000627587 CCL5P13501 91 aa10.96□□□□□ -0.65
PDLIM5-223ENST00000627587 U2AF2P26368 475 aaKnown RBP eCLIP10.96□□□□□ -0.652e-9■■■■■ 29.5
PDLIM5-223ENST00000627587 KRT85P78386 507 aa10.96□□□□□ -0.65
PDLIM5-223ENST00000627587 AKAP17AQ02040 695 aaKnown RBP10.96□□□□□ -0.65
PDLIM5-223ENST00000627587 TRIM29Q14134 588 aa10.96□□□□□ -0.65
PDLIM5-223ENST00000627587 PRRT2Q7Z6L0 340 aaPredicted RBP10.96□□□□□ -0.65
PDLIM5-223ENST00000627587 LRRC47Q8N1G4 583 aaKnown RBP10.96□□□□□ -0.65
PDLIM5-223ENST00000627587 PXYLP1Q8TE99 480 aa10.96□□□□□ -0.65
PDLIM5-223ENST00000627587 CCDC17Q96LX7 622 aa10.96□□□□□ -0.65
PDLIM5-223ENST00000627587 USP28Q96RU2 1077 aa10.96□□□□□ -0.65
PDLIM5-223ENST00000627587 CPVLQ9H3G5 476 aa10.96□□□□□ -0.65
PDLIM5-223ENST00000627587 KCNJ14Q9UNX9 436 aa10.96□□□□□ -0.65
PDLIM5-223ENST00000627587 DDX49Q9Y6V7 483 aaKnown RBP10.96□□□□□ -0.65
PDLIM5-223ENST00000627587 ZHX2Q9Y6X8 837 aa10.96□□□□□ -0.65
PDLIM5-223ENST00000627587 USP17L5A8MUK1 530 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 PHF20L1A8MW92 1017 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 ADAMTS3O15072 1205 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 TTLL1O95922 423 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 GOLGA8HP0CJ92 632 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 CTGFP29279 349 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 MTFR1Q15390 333 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 CERKLQ49MI3 558 aaPredicted RBP10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 USP17L2Q6R6M4 530 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 LEO1Q8WVC0 666 aaPredicted RBP10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 RNF208Q9H0X6 261 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 AFG3L2Q9Y4W6 797 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 ELP1O95163 1332 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 HTTP42858 3142 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 TBC1D12O60347 775 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 GDF11O95390 407 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 PTPRAP18433 802 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 GNAQP50148 359 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 IRF5Q13568 498 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 SEPT2Q15019 361 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 PPP4R3BQ5MIZ7 849 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 OXER1Q8TDS5 423 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 PGBD1Q96JS3 809 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 PHF20Q9BVI0 1012 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 GZF1Q9H116 711 aaPredicted RBP10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 VPS54Q9P1Q0 977 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 TMEM63CQ9P1W3 806 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 CLIP2Q9UDT6 1046 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 HERC5Q9UII4 1024 aaKnown RBP10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 MTMR7Q9Y216 660 aa10.95□□□□□ -0.66
PDLIM5-223ENST00000627587 BTBD18B2RXH4 712 aa10.94□□□□□ -0.66
PDLIM5-223ENST00000627587 MPHOSPH10O00566 681 aaKnown RBP10.94□□□□□ -0.66
PDLIM5-223ENST00000627587 PFKFB3Q16875 520 aaPredicted RBP10.94□□□□□ -0.66
PDLIM5-223ENST00000627587 MYSM1Q5VVJ2 828 aa10.94□□□□□ -0.66
PDLIM5-223ENST00000627587 TYW1BQ6NUM6 668 aa10.94□□□□□ -0.66
PDLIM5-223ENST00000627587 BRAPQ7Z569 592 aa10.94□□□□□ -0.66
PDLIM5-223ENST00000627587 UBE2Q1Q7Z7E8 422 aa10.94□□□□□ -0.66
PDLIM5-223ENST00000627587 MKL1Q969V6 931 aa10.94□□□□□ -0.66
PDLIM5-223ENST00000627587 RBM27Q9P2N5 1060 aaKnown RBP10.94□□□□□ -0.66
PDLIM5-223ENST00000627587 PNMA3Q9UL41 463 aa10.94□□□□□ -0.66
PDLIM5-223ENST00000627587 KLRF2D3W0D1 207 aa10.93□□□□□ -0.66
PDLIM5-223ENST00000627587 ADCY3O60266 1144 aa10.93□□□□□ -0.66
PDLIM5-223ENST00000627587 SGPL1O95470 568 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms