RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 CCDC174Q6PII3 467 aa23.66■■□□□ 1.38
PTCD3-220ENST00000627371 Q6ZUG5 572 aa23.66■■□□□ 1.38
PTCD3-220ENST00000627371 TNS4Q8IZW8 715 aa23.66■■□□□ 1.38
PTCD3-220ENST00000627371 NUDT12Q9BQG2 462 aa23.66■■□□□ 1.38
PTCD3-220ENST00000627371 CYP46A1Q9Y6A2 500 aa23.66■■□□□ 1.38
PTCD3-220ENST00000627371 IVNS1ABPQ9Y6Y0 642 aa23.66■■□□□ 1.38
PTCD3-220ENST00000627371 IRF5Q13568 498 aa23.65■■□□□ 1.38
PTCD3-220ENST00000627371 GRB14Q14449 540 aa23.65■■□□□ 1.38
PTCD3-220ENST00000627371 MORN1Q5T089 497 aa23.65■■□□□ 1.38
PTCD3-220ENST00000627371 APOA5Q6Q788 366 aa23.65■■□□□ 1.38
PTCD3-220ENST00000627371 ADGRF4Q8IZF3 695 aa23.65■■□□□ 1.38
PTCD3-220ENST00000627371 CTCFLQ8NI51 663 aaPredicted RBP23.65■■□□□ 1.38
PTCD3-220ENST00000627371 RAET1EQ8TD07 263 aa23.65■■□□□ 1.38
PTCD3-220ENST00000627371 AGXT2Q9BYV1 514 aa23.65■■□□□ 1.38
PTCD3-220ENST00000627371 RIPK3Q9Y572 518 aa23.65■■□□□ 1.38
PTCD3-220ENST00000627371 SLC15A5A6NIM6 579 aa23.64■■□□□ 1.37
PTCD3-220ENST00000627371 STRNO43815 780 aa23.64■■□□□ 1.37
PTCD3-220ENST00000627371 ICAM1P05362 532 aa23.64■■□□□ 1.37
PTCD3-220ENST00000627371 KIF5BP33176 963 aa23.64■■□□□ 1.37
PTCD3-220ENST00000627371 SYNE3Q6ZMZ3 975 aa23.64■■□□□ 1.37
PTCD3-220ENST00000627371 USP6NLQ92738 828 aa23.64■■□□□ 1.37
PTCD3-220ENST00000627371 AGBL1Q96MI9 1066 aa23.64■■□□□ 1.37
PTCD3-220ENST00000627371 UPF3BQ9BZI7 483 aaKnown RBP23.64■■□□□ 1.37
PTCD3-220ENST00000627371 BRPF3Q9ULD4 1205 aa23.64■■□□□ 1.37
PTCD3-220ENST00000627371 RBBP6Q7Z6E9 1792 aaKnown RBP23.64■■□□□ 1.37
PTCD3-220ENST00000627371 RXRAP19793 462 aa23.63■■□□□ 1.37
PTCD3-220ENST00000627371 SLC4A3P48751 1232 aa23.63■■□□□ 1.37
PTCD3-220ENST00000627371 CDC37Q16543 378 aaPredicted RBP23.63■■□□□ 1.37
PTCD3-220ENST00000627371 TKFCQ3LXA3 575 aa23.63■■□□□ 1.37
PTCD3-220ENST00000627371 MICU3Q86XE3 530 aa23.63■■□□□ 1.37
PTCD3-220ENST00000627371 ABRAQ8N0Z2 381 aa23.63■■□□□ 1.37
PTCD3-220ENST00000627371 CHST13Q8NET6 341 aa23.63■■□□□ 1.37
PTCD3-220ENST00000627371 BRF1Q92994 677 aa23.63■■□□□ 1.37
PTCD3-220ENST00000627371 JMJD4Q9H9V9 463 aa23.63■■□□□ 1.37
PTCD3-220ENST00000627371 PNMA2Q9UL42 364 aa23.63■■□□□ 1.37
PTCD3-220ENST00000627371 CCPG1Q9ULG6 757 aa23.63■■□□□ 1.37
PTCD3-220ENST00000627371 HPS5Q9UPZ3 1129 aa23.63■■□□□ 1.37
PTCD3-220ENST00000627371 KLF18A0A0U1RQI7 1052 aa23.62■■□□□ 1.37
PTCD3-220ENST00000627371 DHX16O60231 1041 aaKnown RBP23.62■■□□□ 1.37
PTCD3-220ENST00000627371 RGS2P41220 211 aa23.62■■□□□ 1.37
PTCD3-220ENST00000627371 RCAN1P53805 252 aa23.62■■□□□ 1.37
PTCD3-220ENST00000627371 MAP2K5Q13163 448 aa23.62■■□□□ 1.37
PTCD3-220ENST00000627371 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.62■■□□□ 1.37
PTCD3-220ENST00000627371 RIOX1Q9H6W3 641 aa23.62■■□□□ 1.37
PTCD3-220ENST00000627371 FBXO40Q9UH90 709 aa23.62■■□□□ 1.37
PTCD3-220ENST00000627371 ZBTB43O43298 467 aa23.61■■□□□ 1.37
PTCD3-220ENST00000627371 FCER1AP12319 257 aa23.61■■□□□ 1.37
PTCD3-220ENST00000627371 ADORA2AP29274 412 aa23.61■■□□□ 1.37
PTCD3-220ENST00000627371 GNAQP50148 359 aa23.61■■□□□ 1.37
PTCD3-220ENST00000627371 APOBRQ0VD83 1088 aa23.61■■□□□ 1.37
PTCD3-220ENST00000627371 SLC35G1Q2M3R5 365 aa23.61■■□□□ 1.37
PTCD3-220ENST00000627371 RAB11FIP4Q86YS3 637 aa23.61■■□□□ 1.37
PTCD3-220ENST00000627371 FANCBQ8NB91 859 aa23.61■■□□□ 1.37
PTCD3-220ENST00000627371 MTMR8Q96EF0 704 aa23.61■■□□□ 1.37
PTCD3-220ENST00000627371 MMP19Q99542 508 aa23.61■■□□□ 1.37
PTCD3-220ENST00000627371 RNF146Q9NTX7 359 aa23.61■■□□□ 1.37
PTCD3-220ENST00000627371 CYTH3O43739 400 aa23.6■■□□□ 1.37
PTCD3-220ENST00000627371 XRCC5P13010 732 aaKnown RBP23.6■■□□□ 1.37
PTCD3-220ENST00000627371 ALAS1P13196 640 aa23.6■■□□□ 1.37
PTCD3-220ENST00000627371 CYP2B6P20813 491 aa23.6■■□□□ 1.37
PTCD3-220ENST00000627371 SMARCA1P28370 1054 aa23.6■■□□□ 1.37
PTCD3-220ENST00000627371 SLC9C1Q4G0N8 1177 aa23.6■■□□□ 1.37
PTCD3-220ENST00000627371 NBPF11Q86T75 865 aa23.6■■□□□ 1.37
PTCD3-220ENST00000627371 CCDC144CPQ8IYA2 1237 aa23.6■■□□□ 1.37
PTCD3-220ENST00000627371 SLAIN1Q8ND83 568 aa23.6■■□□□ 1.37
PTCD3-220ENST00000627371 PXYLP1Q8TE99 480 aa23.6■■□□□ 1.37
PTCD3-220ENST00000627371 TRERF1Q96PN7 1200 aa23.6■■□□□ 1.37
PTCD3-220ENST00000627371 APBA2Q99767 749 aa23.6■■□□□ 1.37
PTCD3-220ENST00000627371 LZTS2Q9BRK4 669 aa23.6■■□□□ 1.37
PTCD3-220ENST00000627371 ACAD9Q9H845 621 aa23.6■■□□□ 1.37
PTCD3-220ENST00000627371 VAT1LQ9HCJ6 419 aa23.6■■□□□ 1.37
PTCD3-220ENST00000627371 HOMER2Q9NSB8 354 aa23.6■■□□□ 1.37
PTCD3-220ENST00000627371 PDRG1Q9NUG6 133 aa23.6■■□□□ 1.37
PTCD3-220ENST00000627371 LCTP09848 1927 aa23.59■■□□□ 1.37
PTCD3-220ENST00000627371 ADCY3O60266 1144 aa23.59■■□□□ 1.37
PTCD3-220ENST00000627371 HOXC6P09630 235 aa23.59■■□□□ 1.37
PTCD3-220ENST00000627371 GRK4P32298 578 aa23.59■■□□□ 1.37
PTCD3-220ENST00000627371 EVCP57679 992 aa23.59■■□□□ 1.37
PTCD3-220ENST00000627371 TOB2Q14106 344 aaPredicted RBP23.59■■□□□ 1.37
PTCD3-220ENST00000627371 KCTD2Q14681 263 aa23.59■■□□□ 1.37
PTCD3-220ENST00000627371 QRICH1Q2TAL8 776 aa23.59■■□□□ 1.37
PTCD3-220ENST00000627371 SPZ1Q9BXG8 430 aa23.59■■□□□ 1.37
PTCD3-220ENST00000627371 RBM28Q9NW13 759 aaKnown RBP23.59■■□□□ 1.37
PTCD3-220ENST00000627371 NID2Q14112 1375 aa23.59■■□□□ 1.37
PTCD3-220ENST00000627371 PLEKHA8P1O95397 391 aa23.58■■□□□ 1.37
PTCD3-220ENST00000627371 TAL1P17542 331 aaPredicted RBP23.58■■□□□ 1.37
PTCD3-220ENST00000627371 RTN1Q16799 776 aa23.58■■□□□ 1.37
PTCD3-220ENST00000627371 ABHD8Q96I13 439 aa23.58■■□□□ 1.37
PTCD3-220ENST00000627371 C22orf23Q9BZE7 217 aa23.58■■□□□ 1.37
PTCD3-220ENST00000627371 UPF2Q9HAU5 1272 aaKnown RBP23.58■■□□□ 1.37
PTCD3-220ENST00000627371 GOLGA8AA7E2F4 631 aa23.57■■□□□ 1.36
PTCD3-220ENST00000627371 GOLGA8BA8MQT2 603 aa23.57■■□□□ 1.36
PTCD3-220ENST00000627371 ZBTB5O15062 677 aa23.57■■□□□ 1.36
PTCD3-220ENST00000627371 RBM25P49756 843 aaKnown RBP23.57■■□□□ 1.36
PTCD3-220ENST00000627371 TMTC3Q6ZXV5 915 aa23.57■■□□□ 1.36
PTCD3-220ENST00000627371 DPP9Q86TI2 863 aa23.57■■□□□ 1.36
PTCD3-220ENST00000627371 SRBD1Q8N5C6 995 aaKnown RBP23.57■■□□□ 1.36
PTCD3-220ENST00000627371 SH3TC2Q8TF17 1288 aa23.57■■□□□ 1.36
PTCD3-220ENST00000627371 ARMC5Q96C12 935 aa23.57■■□□□ 1.36
PTCD3-220ENST00000627371 NAP1L2Q9ULW6 460 aaPredicted RBP23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms