RNA–Protein interactions for RNA: ENST00000625244.2

SNX1-214, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 324 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-214ENST00000625244 RIPK3Q9Y572 518 aa16.88■□□□□ 0.29
SNX1-214ENST00000625244 SPTBN4Q9H254 2564 aa16.88■□□□□ 0.29
SNX1-214ENST00000625244 ZFHX2Q9C0A1 2572 aaPredicted RBP16.87■□□□□ 0.29
SNX1-214ENST00000625244 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.87■□□□□ 0.29
SNX1-214ENST00000625244 AKR1B1P15121 316 aa16.87■□□□□ 0.29
SNX1-214ENST00000625244 LEXMQ3ZCV2 418 aa16.87■□□□□ 0.29
SNX1-214ENST00000625244 TNNI3KQ59H18 835 aa16.87■□□□□ 0.29
SNX1-214ENST00000625244 ZNF512BQ96KM6 892 aaPredicted RBP16.87■□□□□ 0.29
SNX1-214ENST00000625244 RIOK1Q9BRS2 568 aaKnown RBP16.87■□□□□ 0.29
SNX1-214ENST00000625244 KATNBL1Q9H079 304 aa16.87■□□□□ 0.29
SNX1-214ENST00000625244 SH2D4AQ9H788 454 aa16.87■□□□□ 0.29
SNX1-214ENST00000625244 FPGT-TNNI3KV9GXZ4 949 aa16.87■□□□□ 0.29
SNX1-214ENST00000625244 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.86■□□□□ 0.29
SNX1-214ENST00000625244 CABYRO75952 493 aa16.86■□□□□ 0.29
SNX1-214ENST00000625244 PFKMP08237 780 aa16.86■□□□□ 0.29
SNX1-214ENST00000625244 CYP2D6P10635 497 aa16.86■□□□□ 0.29
SNX1-214ENST00000625244 PTGS1P23219 599 aa16.86■□□□□ 0.29
SNX1-214ENST00000625244 PSMC6P62333 389 aa16.86■□□□□ 0.29
SNX1-214ENST00000625244 ARMCX2Q7L311 632 aa16.86■□□□□ 0.29
SNX1-214ENST00000625244 HERC6Q8IVU3 1022 aa16.86■□□□□ 0.29
SNX1-214ENST00000625244 SLC9A7Q96T83 725 aa16.86■□□□□ 0.29
SNX1-214ENST00000625244 MCM9Q9NXL9 1143 aa16.86■□□□□ 0.29
SNX1-214ENST00000625244 DMDP11532 3685 aa16.85■□□□□ 0.29
SNX1-214ENST00000625244 PNMA6EA0A0J9YXQ4 647 aa16.85■□□□□ 0.29
SNX1-214ENST00000625244 POTEB3A0JP26 581 aa16.85■□□□□ 0.29
SNX1-214ENST00000625244 DCXO43602 365 aa16.85■□□□□ 0.29
SNX1-214ENST00000625244 KCNA5P22460 613 aa16.85■□□□□ 0.29
SNX1-214ENST00000625244 SNRNP48Q6IEG0 339 aaKnown RBP16.85■□□□□ 0.29
SNX1-214ENST00000625244 POTEBQ6S5H4 581 aa16.85■□□□□ 0.29
SNX1-214ENST00000625244 PHOSPHO2Q8TCD6 241 aa16.85■□□□□ 0.29
SNX1-214ENST00000625244 GDPD5Q8WTR4 605 aa16.85■□□□□ 0.29
SNX1-214ENST00000625244 DYNLL2Q96FJ2 89 aa16.85■□□□□ 0.29
SNX1-214ENST00000625244 TEX13BQ9BXU2 312 aa16.85■□□□□ 0.29
SNX1-214ENST00000625244 GPR108Q9NPR9 543 aa16.85■□□□□ 0.29
SNX1-214ENST00000625244 LMCD1Q9NZU5 365 aa16.85■□□□□ 0.29
SNX1-214ENST00000625244 MCM3APO60318 1980 aa16.84■□□□□ 0.29
SNX1-214ENST00000625244 CYP2C9P11712 490 aa16.84■□□□□ 0.29
SNX1-214ENST00000625244 TNFAIP2Q03169 654 aa16.84■□□□□ 0.29
SNX1-214ENST00000625244 FSCN1Q16658 493 aaKnown RBP16.84■□□□□ 0.29
SNX1-214ENST00000625244 FAM83BQ5T0W9 1011 aa16.84■□□□□ 0.29
SNX1-214ENST00000625244 HFE2Q6ZVN8 426 aa16.84■□□□□ 0.29
SNX1-214ENST00000625244 NOL8Q76FK4 1167 aaKnown RBP16.84■□□□□ 0.29
SNX1-214ENST00000625244 CCDC144CPQ8IYA2 1237 aa16.84■□□□□ 0.29
SNX1-214ENST00000625244 ANTXR1Q9H6X2 564 aa16.84■□□□□ 0.29
SNX1-214ENST00000625244 LCHNA4D1U4 455 aa16.83■□□□□ 0.28
SNX1-214ENST00000625244 KIF28PB7ZC32 967 aa16.83■□□□□ 0.28
SNX1-214ENST00000625244 GNAI3P08754 354 aa16.83■□□□□ 0.28
SNX1-214ENST00000625244 ACTN1P12814 892 aa16.83■□□□□ 0.28
SNX1-214ENST00000625244 EEF2P13639 858 aaKnown RBP16.83■□□□□ 0.28
SNX1-214ENST00000625244 SLC4A3P48751 1232 aa16.83■□□□□ 0.28
SNX1-214ENST00000625244 COL4A4P53420 1690 aaPredicted RBP16.83■□□□□ 0.28
SNX1-214ENST00000625244 PTCRAQ6ISU1 281 aaPredicted RBP16.83■□□□□ 0.28
SNX1-214ENST00000625244 SEZ6LQ9BYH1 1024 aa16.83■□□□□ 0.28
SNX1-214ENST00000625244 ALDH8A1Q9H2A2 487 aaPredicted RBP16.83■□□□□ 0.28
SNX1-214ENST00000625244 TRMT13Q9NUP7 481 aaKnown RBP16.83■□□□□ 0.28
SNX1-214ENST00000625244 GNEQ9Y223 722 aaKnown RBP16.83■□□□□ 0.28
SNX1-214ENST00000625244 GRXCR2A6NFK2 248 aa16.82■□□□□ 0.28
SNX1-214ENST00000625244 ST18O60284 1047 aa16.82■□□□□ 0.28
SNX1-214ENST00000625244 TLK2Q86UE8 772 aa16.82■□□□□ 0.28
SNX1-214ENST00000625244 API5Q9BZZ5 524 aaKnown RBP16.82■□□□□ 0.28
SNX1-214ENST00000625244 TLR7Q9NYK1 1049 aaKnown RBP16.82■□□□□ 0.28
SNX1-214ENST00000625244 SWAP70Q9UH65 585 aa16.82■□□□□ 0.28
SNX1-214ENST00000625244 DBNLQ9UJU6 430 aaKnown RBP16.82■□□□□ 0.28
SNX1-214ENST00000625244 SCN5AQ14524 2016 aa16.82■□□□□ 0.28
SNX1-214ENST00000625244 DCHS1Q96JQ0 3298 aa16.81■□□□□ 0.28
SNX1-214ENST00000625244 ZNF536O15090 1300 aa16.81■□□□□ 0.28
SNX1-214ENST00000625244 MAGEB6P1A0A0J9YX57 407 aa16.81■□□□□ 0.28
SNX1-214ENST00000625244 DYNC1LI2O43237 492 aaPredicted RBP16.81■□□□□ 0.28
SNX1-214ENST00000625244 RAD21O60216 631 aa16.81■□□□□ 0.28
SNX1-214ENST00000625244 SDR42E1Q8WUS8 393 aa16.81■□□□□ 0.28
SNX1-214ENST00000625244 NUP88Q99567 741 aaPredicted RBP16.81■□□□□ 0.28
SNX1-214ENST00000625244 SUGCTQ9HAC7 445 aa16.81■□□□□ 0.28
SNX1-214ENST00000625244 NAV1Q8NEY1 1877 aa16.8■□□□□ 0.28
SNX1-214ENST00000625244 TMEM63BQ5T3F8 832 aa16.8■□□□□ 0.28
SNX1-214ENST00000625244 TMCO2Q7Z6W1 182 aaPredicted RBP16.8■□□□□ 0.28
SNX1-214ENST00000625244 CPXCR1Q8N123 301 aa16.8■□□□□ 0.28
SNX1-214ENST00000625244 ANKRD35Q8N283 1001 aa16.8■□□□□ 0.28
SNX1-214ENST00000625244 SLF1Q9BQI6 1058 aa16.8■□□□□ 0.28
SNX1-214ENST00000625244 CRNKL1Q9BZJ0 848 aaKnown RBP16.8■□□□□ 0.28
SNX1-214ENST00000625244 DCP1AQ9NPI6 582 aaPredicted RBP16.8■□□□□ 0.28
SNX1-214ENST00000625244 TNKSO95271 1327 aa16.79■□□□□ 0.28
SNX1-214ENST00000625244 E9PSI1 815 aa16.79■□□□□ 0.28
SNX1-214ENST00000625244 ZEB2O60315 1214 aa16.79■□□□□ 0.28
SNX1-214ENST00000625244 SMPD1P17405 629 aa16.79■□□□□ 0.28
SNX1-214ENST00000625244 CNTN2Q02246 1040 aa16.79■□□□□ 0.28
SNX1-214ENST00000625244 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.79■□□□□ 0.28
SNX1-214ENST00000625244 PRSS33Q8NF86 280 aa16.79■□□□□ 0.28
SNX1-214ENST00000625244 FTOQ9C0B1 505 aaKnown RBP eCLIP16.79■□□□□ 0.28
SNX1-214ENST00000625244 AP5M1Q9H0R1 490 aa16.79■□□□□ 0.28
SNX1-214ENST00000625244 GOPCQ9HD26 462 aa16.79■□□□□ 0.28
SNX1-214ENST00000625244 MTUS1Q9ULD2 1270 aa16.79■□□□□ 0.28
SNX1-214ENST00000625244 ATP2A1O14983 1001 aa16.78■□□□□ 0.28
SNX1-214ENST00000625244 RFC2P35250 354 aa16.78■□□□□ 0.28
SNX1-214ENST00000625244 MFSD14AQ96MC6 490 aa16.78■□□□□ 0.28
SNX1-214ENST00000625244 CCDC8Q9H0W5 538 aaPredicted RBP16.78■□□□□ 0.28
SNX1-214ENST00000625244 RAVER2Q9HCJ3 691 aaKnown RBP16.78■□□□□ 0.28
SNX1-214ENST00000625244 DDX49Q9Y6V7 483 aaKnown RBP16.78■□□□□ 0.28
SNX1-214ENST00000625244 WDR87Q6ZQQ6 2873 aa16.78■□□□□ 0.28
SNX1-214ENST00000625244 H3BQ06 376 aaPredicted RBP16.77■□□□□ 0.28
SNX1-214ENST00000625244 GNAI2P04899 355 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms