RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 ACAD9Q9H845 621 aa17.43■□□□□ 0.38
LINC00643-205ENST00000623219 CNNM2Q9H8M5 875 aa17.43■□□□□ 0.38
LINC00643-205ENST00000623219 SYNGAP1Q96PV0 1343 aa17.43■□□□□ 0.38
LINC00643-205ENST00000623219 DNM1LO00429 736 aa17.42■□□□□ 0.38
LINC00643-205ENST00000623219 KDM4AO75164 1064 aa17.42■□□□□ 0.38
LINC00643-205ENST00000623219 CCDC178Q5BJE1 867 aa17.42■□□□□ 0.38
LINC00643-205ENST00000623219 BTNL9Q6UXG8 535 aa17.42■□□□□ 0.38
LINC00643-205ENST00000623219 ZNF467Q7Z7K2 595 aaPredicted RBP17.42■□□□□ 0.38
LINC00643-205ENST00000623219 ANKRD35Q8N283 1001 aa17.42■□□□□ 0.38
LINC00643-205ENST00000623219 KRT23Q9C075 422 aa17.42■□□□□ 0.38
LINC00643-205ENST00000623219 HOMER2Q9NSB8 354 aa17.42■□□□□ 0.38
LINC00643-205ENST00000623219 B4E1Z4 1266 aa17.41■□□□□ 0.38
LINC00643-205ENST00000623219 SNHG28P0DPA3 235 aa17.41■□□□□ 0.38
LINC00643-205ENST00000623219 MAMDC4Q6UXC1 1216 aa17.41■□□□□ 0.38
LINC00643-205ENST00000623219 DGKHQ86XP1 1220 aa17.41■□□□□ 0.38
LINC00643-205ENST00000623219 AGBL1Q96MI9 1066 aa17.41■□□□□ 0.38
LINC00643-205ENST00000623219 ZKSCAN3Q9BRR0 538 aa17.41■□□□□ 0.38
LINC00643-205ENST00000623219 RANBP17Q9H2T7 1088 aaKnown RBP17.41■□□□□ 0.38
LINC00643-205ENST00000623219 RNF146Q9NTX7 359 aa17.41■□□□□ 0.38
LINC00643-205ENST00000623219 FRMPD2Q68DX3 1309 aaPredicted RBP17.41■□□□□ 0.38
LINC00643-205ENST00000623219 ICAM1P05362 532 aa17.4■□□□□ 0.38
LINC00643-205ENST00000623219 ZNF543Q08ER8 600 aa17.4■□□□□ 0.38
LINC00643-205ENST00000623219 PRAMEF19Q5SWL8 479 aa17.4■□□□□ 0.38
LINC00643-205ENST00000623219 SYDE2Q5VT97 1194 aa17.4■□□□□ 0.38
LINC00643-205ENST00000623219 CCDC174Q6PII3 467 aa17.4■□□□□ 0.38
LINC00643-205ENST00000623219 CENPQQ7L2Z9 268 aaPredicted RBP17.4■□□□□ 0.38
LINC00643-205ENST00000623219 CNPY2Q9Y2B0 182 aa17.4■□□□□ 0.38
LINC00643-205ENST00000623219 TRIOBPQ9H2D6 2365 aa17.4■□□□□ 0.38
LINC00643-205ENST00000623219 SGSM2O43147 1006 aa17.39■□□□□ 0.37
LINC00643-205ENST00000623219 ALAS1P13196 640 aa17.39■□□□□ 0.37
LINC00643-205ENST00000623219 TTBK2Q6IQ55 1244 aa17.39■□□□□ 0.37
LINC00643-205ENST00000623219 C7orf61Q8IZ16 206 aa17.39■□□□□ 0.37
LINC00643-205ENST00000623219 ARRDC4Q8NCT1 418 aa17.39■□□□□ 0.37
LINC00643-205ENST00000623219 FGD4Q96M96 766 aa17.39■□□□□ 0.37
LINC00643-205ENST00000623219 ZSCAN10Q96SZ4 725 aaPredicted RBP17.39■□□□□ 0.37
LINC00643-205ENST00000623219 A1CFQ9NQ94 594 aaKnown RBP17.39■□□□□ 0.37
LINC00643-205ENST00000623219 CCPG1Q9ULG6 757 aa17.39■□□□□ 0.37
LINC00643-205ENST00000623219 TNKSO95271 1327 aa17.39■□□□□ 0.37
LINC00643-205ENST00000623219 KBTBD13C9JR72 458 aa17.38■□□□□ 0.37
LINC00643-205ENST00000623219 RARBP10826 455 aa17.38■□□□□ 0.37
LINC00643-205ENST00000623219 AKR1A1P14550 325 aa17.38■□□□□ 0.37
LINC00643-205ENST00000623219 SLC16A2P36021 539 aa17.38■□□□□ 0.37
LINC00643-205ENST00000623219 SNAP25P60880 206 aa17.38■□□□□ 0.37
LINC00643-205ENST00000623219 HABP4Q5JVS0 413 aaKnown RBP17.38■□□□□ 0.37
LINC00643-205ENST00000623219 GPATCH4Q5T3I0 446 aaKnown RBP17.38■□□□□ 0.37
LINC00643-205ENST00000623219 ANO1Q5XXA6 986 aa17.38■□□□□ 0.37
LINC00643-205ENST00000623219 ENAHQ8N8S7 591 aaPredicted RBP17.38■□□□□ 0.37
LINC00643-205ENST00000623219 PNMA1Q8ND90 353 aa17.38■□□□□ 0.37
LINC00643-205ENST00000623219 ANKS1AQ92625 1134 aa17.38■□□□□ 0.37
LINC00643-205ENST00000623219 TRERF1Q96PN7 1200 aa17.38■□□□□ 0.37
LINC00643-205ENST00000623219 KAT14Q9H8E8 782 aa17.38■□□□□ 0.37
LINC00643-205ENST00000623219 GPCPD1Q9NPB8 672 aa17.38■□□□□ 0.37
LINC00643-205ENST00000623219 ZSWIM5Q9P217 1185 aa17.38■□□□□ 0.37
LINC00643-205ENST00000623219 COLQQ9Y215 455 aaPredicted RBP17.38■□□□□ 0.37
LINC00643-205ENST00000623219 U3KPZ7 1027 aaPredicted RBP17.38■□□□□ 0.37
LINC00643-205ENST00000623219 BAZ2BQ9UIF8 2168 aaKnown RBP17.38■□□□□ 0.37
LINC00643-205ENST00000623219 ZNF865P0CJ78 1059 aaPredicted RBP17.37■□□□□ 0.37
LINC00643-205ENST00000623219 PTH1RQ03431 593 aa17.37■□□□□ 0.37
LINC00643-205ENST00000623219 CHRDL2Q6WN34 429 aa17.37■□□□□ 0.37
LINC00643-205ENST00000623219 FAM133AQ8N9E0 248 aa17.37■□□□□ 0.37
LINC00643-205ENST00000623219 UBAC1Q9BSL1 405 aa17.37■□□□□ 0.37
LINC00643-205ENST00000623219 XPNPEP3Q9NQH7 507 aa17.37■□□□□ 0.37
LINC00643-205ENST00000623219 PNMA2Q9UL42 364 aa17.37■□□□□ 0.37
LINC00643-205ENST00000623219 POTEB2H3BUK9 544 aa17.36■□□□□ 0.37
LINC00643-205ENST00000623219 SNAI1O95863 264 aaPredicted RBP17.36■□□□□ 0.37
LINC00643-205ENST00000623219 CYP21A2P08686 494 aa17.36■□□□□ 0.37
LINC00643-205ENST00000623219 TAL1P17542 331 aaPredicted RBP17.36■□□□□ 0.37
LINC00643-205ENST00000623219 TRDNQ13061 729 aa17.36■□□□□ 0.37
LINC00643-205ENST00000623219 LRRC26Q2I0M4 334 aa17.36■□□□□ 0.37
LINC00643-205ENST00000623219 MUM1L1Q5H9M0 696 aa17.36■□□□□ 0.37
LINC00643-205ENST00000623219 GJC2Q5T442 439 aaPredicted RBP17.36■□□□□ 0.37
LINC00643-205ENST00000623219 ARMCX2Q7L311 632 aa17.36■□□□□ 0.37
LINC00643-205ENST00000623219 SENP6Q9GZR1 1112 aaPredicted RBP17.36■□□□□ 0.37
LINC00643-205ENST00000623219 ABHD16BQ9H3Z7 469 aa17.36■□□□□ 0.37
LINC00643-205ENST00000623219 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.36■□□□□ 0.37
LINC00643-205ENST00000623219 MYH7BA7E2Y1 1941 aa17.36■□□□□ 0.37
LINC00643-205ENST00000623219 WDR19Q8NEZ3 1342 aa17.36■□□□□ 0.37
LINC00643-205ENST00000623219 CNTN2Q02246 1040 aa17.35■□□□□ 0.37
LINC00643-205ENST00000623219 LRRC41Q15345 812 aa17.35■□□□□ 0.37
LINC00643-205ENST00000623219 ASPRV1Q53RT3 343 aa17.35■□□□□ 0.37
LINC00643-205ENST00000623219 CCDC144CPQ8IYA2 1237 aa17.35■□□□□ 0.37
LINC00643-205ENST00000623219 CYP39A1Q9NYL5 469 aa17.35■□□□□ 0.37
LINC00643-205ENST00000623219 ZHX1Q9UKY1 873 aaPredicted RBP17.35■□□□□ 0.37
LINC00643-205ENST00000623219 LAMA3Q16787 3333 aa17.35■□□□□ 0.37
LINC00643-205ENST00000623219 ACVR2BQ13705 512 aa17.34■□□□□ 0.37
LINC00643-205ENST00000623219 BMP2KLQ5H9B9 411 aa17.34■□□□□ 0.37
LINC00643-205ENST00000623219 IFIT1BQ5T764 474 aaKnown RBP17.34■□□□□ 0.37
LINC00643-205ENST00000623219 RNF180Q86T96 592 aa17.34■□□□□ 0.37
LINC00643-205ENST00000623219 PRO3102Q9H379 93 aa17.34■□□□□ 0.37
LINC00643-205ENST00000623219 FAM184BQ9ULE4 1060 aa17.34■□□□□ 0.37
LINC00643-205ENST00000623219 SYNRGQ9UMZ2 1314 aa17.34■□□□□ 0.37
LINC00643-205ENST00000623219 SZT2Q5T011 3432 aa17.34■□□□□ 0.37
LINC00643-205ENST00000623219 ASTN1O14525 1302 aa17.33■□□□□ 0.36
LINC00643-205ENST00000623219 ASB14A6NK59 587 aa17.33■□□□□ 0.36
LINC00643-205ENST00000623219 MYCNP04198 464 aaPredicted RBP17.33■□□□□ 0.36
LINC00643-205ENST00000623219 GOLGA8HP0CJ92 632 aa17.33■□□□□ 0.36
LINC00643-205ENST00000623219 SEC23AQ15436 765 aa17.33■□□□□ 0.36
LINC00643-205ENST00000623219 NSMFQ6X4W1 530 aa17.33■□□□□ 0.36
LINC00643-205ENST00000623219 CYB5R4Q7L1T6 521 aa17.33■□□□□ 0.36
LINC00643-205ENST00000623219 RALYLQ86SE5 291 aaKnown RBP17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms