RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 NUP58Q9BVL2 599 aa13.99□□□□□ -0.17
MSH6-213ENST00000614496 USP17L3A6NCW0 530 aa13.98□□□□□ -0.17
MSH6-213ENST00000614496 USP17L4A6NCW7 530 aa13.98□□□□□ -0.17
MSH6-213ENST00000614496 RPS8P62241 208 aaKnown RBP13.98□□□□□ -0.17
MSH6-213ENST00000614496 SLC7A5Q01650 507 aa13.98□□□□□ -0.17
MSH6-213ENST00000614496 CNNM4Q6P4Q7 775 aa13.98□□□□□ -0.17
MSH6-213ENST00000614496 USP17L1Q7RTZ2 530 aa13.98□□□□□ -0.17
MSH6-213ENST00000614496 FBXL16Q8N461 479 aa13.98□□□□□ -0.17
MSH6-213ENST00000614496 SRBD1Q8N5C6 995 aaKnown RBP13.98□□□□□ -0.17
MSH6-213ENST00000614496 FUT8Q9BYC5 575 aa13.98□□□□□ -0.17
MSH6-213ENST00000614496 DPYDQ12882 1025 aa13.98□□□□□ -0.17
MSH6-213ENST00000614496 ERFEQ4G0M1 354 aa13.98□□□□□ -0.17
MSH6-213ENST00000614496 CFAP58Q5T655 872 aa13.98□□□□□ -0.17
MSH6-213ENST00000614496 TRMT1LQ7Z2T5 733 aaKnown RBP13.98□□□□□ -0.17
MSH6-213ENST00000614496 KLRF2D3W0D1 207 aa13.98□□□□□ -0.17
MSH6-213ENST00000614496 MYO1CO00159 1063 aa13.98□□□□□ -0.17
MSH6-213ENST00000614496 TRIM66O15016 1216 aa13.98□□□□□ -0.17
MSH6-213ENST00000614496 CDR1P51861 262 aa13.98□□□□□ -0.17
MSH6-213ENST00000614496 RBM5P52756 815 aaKnown RBP eCLIP13.98□□□□□ -0.17
MSH6-213ENST00000614496 SMIM5Q71RC9 77 aa13.98□□□□□ -0.17
MSH6-213ENST00000614496 A0A087X0B3 334 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 ZNF18P17022 549 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 PRDX5P30044 214 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 ATP1A2P50993 1020 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 MNAT1P51948 309 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 LRRC41Q15345 812 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 SNX29Q8TEQ0 813 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 LOC102724428A0A0B4J2F2 783 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 ZNF76P36508 570 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 GTF2A1P52655 376 aaPredicted RBP13.97□□□□□ -0.17
MSH6-213ENST00000614496 SIK1P57059 783 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 NHEJ1Q9H9Q4 299 aaPredicted RBP13.97□□□□□ -0.17
MSH6-213ENST00000614496 GOPCQ9HD26 462 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 ATP1A1P05023 1023 aaKnown RBP13.97□□□□□ -0.17
MSH6-213ENST00000614496 RDXP35241 583 aaKnown RBP13.97□□□□□ -0.17
MSH6-213ENST00000614496 GUCY2FP51841 1108 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 MECOMQ03112 1051 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 KCTD16Q68DU8 428 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 KLHL7Q8IXQ5 586 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 RIN2Q8WYP3 895 aaPredicted RBP13.97□□□□□ -0.17
MSH6-213ENST00000614496 TSGA10Q9BZW7 698 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 DISC1Q9NRI5 854 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 MYO1AQ9UBC5 1043 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 PPP1R3GB7ZBB8 358 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 H3BQF6 201 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 PLCG1P19174 1290 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 HPDP32754 393 aaPredicted RBP13.97□□□□□ -0.17
MSH6-213ENST00000614496 RASGRP2Q7LDG7 609 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 TEX11Q8IYF3 940 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 PHF20Q9BVI0 1012 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 PCDHA4Q9UN74 947 aa13.97□□□□□ -0.17
MSH6-213ENST00000614496 ARHGAP23Q9P227 1491 aa13.96□□□□□ -0.17
MSH6-213ENST00000614496 ERVV-1B6SEH8 477 aa13.96□□□□□ -0.17
MSH6-213ENST00000614496 MOCS3O95396 460 aa13.96□□□□□ -0.17
MSH6-213ENST00000614496 OR52Z1P0C646 297 aa13.96□□□□□ -0.17
MSH6-213ENST00000614496 HPS3Q969F9 1004 aa13.96□□□□□ -0.17
MSH6-213ENST00000614496 ARPP21Q9UBL0 812 aaPredicted RBP13.96□□□□□ -0.17
MSH6-213ENST00000614496 NDUFAB1O14561 156 aa13.96□□□□□ -0.17
MSH6-213ENST00000614496 TRAPPC10P48553 1259 aa13.96□□□□□ -0.17
MSH6-213ENST00000614496 ERVK-24P63145 666 aa13.96□□□□□ -0.17
MSH6-213ENST00000614496 ATP2C1P98194 919 aaPredicted RBP13.96□□□□□ -0.17
MSH6-213ENST00000614496 IFFO1Q0D2I5 559 aa13.96□□□□□ -0.17
MSH6-213ENST00000614496 KRT26Q7Z3Y9 468 aa13.96□□□□□ -0.17
MSH6-213ENST00000614496 TAX1BP1Q86VP1 789 aa13.96□□□□□ -0.17
MSH6-213ENST00000614496 GPATCH11Q8N954 259 aa13.96□□□□□ -0.17
MSH6-213ENST00000614496 SMCR8Q8TEV9 937 aaPredicted RBP13.96□□□□□ -0.17
MSH6-213ENST00000614496 P2RX5Q93086 422 aa13.96□□□□□ -0.17
MSH6-213ENST00000614496 HSD3B7Q9H2F3 369 aa13.96□□□□□ -0.17
MSH6-213ENST00000614496 MED4Q9NPJ6 270 aa13.96□□□□□ -0.17
MSH6-213ENST00000614496 ZNF185O15231 689 aa13.96□□□□□ -0.18
MSH6-213ENST00000614496 EEF1GP26641 437 aaKnown RBP13.96□□□□□ -0.18
MSH6-213ENST00000614496 CCT5P48643 541 aa13.96□□□□□ -0.18
MSH6-213ENST00000614496 TPTE2Q6XPS3 522 aa13.96□□□□□ -0.18
MSH6-213ENST00000614496 RPGRQ92834 1020 aaKnown RBP13.96□□□□□ -0.18
MSH6-213ENST00000614496 CCDC113Q9H0I3 377 aa13.96□□□□□ -0.18
MSH6-213ENST00000614496 TNS3Q68CZ2 1445 aa13.95□□□□□ -0.18
MSH6-213ENST00000614496 SETD1AO15047 1707 aaKnown RBP13.95□□□□□ -0.18
MSH6-213ENST00000614496 SEMA3EO15041 775 aa13.95□□□□□ -0.18
MSH6-213ENST00000614496 ZRANB2O95218 330 aaKnown RBP eCLIP13.95□□□□□ -0.18
MSH6-213ENST00000614496 RASSF7Q02833 373 aa13.95□□□□□ -0.18
MSH6-213ENST00000614496 UBE4AQ14139 1066 aa13.95□□□□□ -0.18
MSH6-213ENST00000614496 DIXDC1Q155Q3 683 aa13.95□□□□□ -0.18
MSH6-213ENST00000614496 SLC44A5Q8NCS7 719 aa13.95□□□□□ -0.18
MSH6-213ENST00000614496 MMS19Q96T76 1030 aa13.95□□□□□ -0.18
MSH6-213ENST00000614496 FRMPD2Q68DX3 1309 aaPredicted RBP13.95□□□□□ -0.18
MSH6-213ENST00000614496 GNGT1P63211 74 aa13.95□□□□□ -0.18
MSH6-213ENST00000614496 SF3A3Q12874 501 aaKnown RBP eCLIP13.95□□□□□ -0.18
MSH6-213ENST00000614496 TBX2Q13207 712 aaPredicted RBP13.95□□□□□ -0.18
MSH6-213ENST00000614496 CALCRLQ16602 461 aa13.95□□□□□ -0.18
MSH6-213ENST00000614496 CT47A1Q5JQC4 288 aaPredicted RBP13.95□□□□□ -0.18
MSH6-213ENST00000614496 KRT25Q7Z3Z0 450 aa13.95□□□□□ -0.18
MSH6-213ENST00000614496 STAG2Q8N3U4 1231 aa13.95□□□□□ -0.18
MSH6-213ENST00000614496 TCRBV5S4A2TA0A5A2 114 aa13.95□□□□□ -0.18
MSH6-213ENST00000614496 GSTO1P78417 241 aa13.95□□□□□ -0.18
MSH6-213ENST00000614496 MDM2Q00987 491 aaPredicted RBP13.95□□□□□ -0.18
MSH6-213ENST00000614496 REXO1Q8N1G1 1221 aaKnown RBP13.95□□□□□ -0.18
MSH6-213ENST00000614496 TRIM58Q8NG06 486 aa13.95□□□□□ -0.18
MSH6-213ENST00000614496 BCAS4Q8TDM0 211 aa13.95□□□□□ -0.18
MSH6-213ENST00000614496 CCDC43Q96MW1 224 aaKnown RBP13.95□□□□□ -0.18
MSH6-213ENST00000614496 KCND1Q9NSA2 647 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms