RNA–Protein interactions for RNA: ENST00000613856.4

SLIRP-212, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SLIRP, Length 420 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-212ENST00000613856 SIAH1Q8IUQ4 282 aa13.27□□□□□ -0.29
SLIRP-212ENST00000613856 CCDC144CPQ8IYA2 1237 aa13.27□□□□□ -0.29
SLIRP-212ENST00000613856 LRRC47Q8N1G4 583 aaKnown RBP13.27□□□□□ -0.29
SLIRP-212ENST00000613856 DEFB123Q8N688 67 aa13.27□□□□□ -0.29
SLIRP-212ENST00000613856 RGS22Q8NE09 1264 aa13.27□□□□□ -0.29
SLIRP-212ENST00000613856 GMCL1P1Q8NEA9 526 aa13.27□□□□□ -0.29
SLIRP-212ENST00000613856 PARK7Q99497 189 aaKnown RBP13.27□□□□□ -0.29
SLIRP-212ENST00000613856 COL25A1Q9BXS0 654 aaPredicted RBP13.27□□□□□ -0.29
SLIRP-212ENST00000613856 ARHGEF10LQ9HCE6 1279 aa13.27□□□□□ -0.29
SLIRP-212ENST00000613856 PAK6Q9NQU5 681 aaPredicted RBP13.27□□□□□ -0.29
SLIRP-212ENST00000613856 CLIP2Q9UDT6 1046 aa13.27□□□□□ -0.29
SLIRP-212ENST00000613856 PALM3A6NDB9 673 aaPredicted RBP13.26□□□□□ -0.29
SLIRP-212ENST00000613856 PDHBP11177 359 aa13.26□□□□□ -0.29
SLIRP-212ENST00000613856 NUCB2P80303 420 aa13.26□□□□□ -0.29
SLIRP-212ENST00000613856 FUT2Q10981 343 aa13.26□□□□□ -0.29
SLIRP-212ENST00000613856 RAB3GAP1Q15042 981 aa13.26□□□□□ -0.29
SLIRP-212ENST00000613856 ASPRV1Q53RT3 343 aa13.26□□□□□ -0.29
SLIRP-212ENST00000613856 SCYL3Q8IZE3 742 aa13.26□□□□□ -0.29
SLIRP-212ENST00000613856 CNTNAP5Q8WYK1 1306 aa13.26□□□□□ -0.29
SLIRP-212ENST00000613856 LZTS2Q9BRK4 669 aa13.26□□□□□ -0.29
SLIRP-212ENST00000613856 RNF26Q9BY78 433 aaPredicted RBP13.26□□□□□ -0.29
SLIRP-212ENST00000613856 CRISPLD2Q9H0B8 497 aa13.26□□□□□ -0.29
SLIRP-212ENST00000613856 SH2D4AQ9H788 454 aa13.26□□□□□ -0.29
SLIRP-212ENST00000613856 MAD2L2Q9UI95 211 aa13.26□□□□□ -0.29
SLIRP-212ENST00000613856 A0A0G2JLL6 359 aaPredicted RBP13.25□□□□□ -0.29
SLIRP-212ENST00000613856 PARP1P09874 1014 aaKnown RBP13.25□□□□□ -0.29
SLIRP-212ENST00000613856 FDPSP14324 419 aaKnown RBP13.25□□□□□ -0.29
SLIRP-212ENST00000613856 SMARCA1P28370 1054 aa13.25□□□□□ -0.29
SLIRP-212ENST00000613856 GADL1Q6ZQY3 521 aa13.25□□□□□ -0.29
SLIRP-212ENST00000613856 PRRT2Q7Z6L0 340 aaPredicted RBP13.25□□□□□ -0.29
SLIRP-212ENST00000613856 TRIM22Q8IYM9 498 aa13.25□□□□□ -0.29
SLIRP-212ENST00000613856 DCAF4Q8WV16 495 aa13.25□□□□□ -0.29
SLIRP-212ENST00000613856 GMCL1Q96IK5 515 aa13.25□□□□□ -0.29
SLIRP-212ENST00000613856 ORC3Q9UBD5 711 aaPredicted RBP13.25□□□□□ -0.29
SLIRP-212ENST00000613856 TMX2Q9Y320 296 aa13.25□□□□□ -0.29
SLIRP-212ENST00000613856 BAZ2BQ9UIF8 2168 aaKnown RBP13.25□□□□□ -0.29
SLIRP-212ENST00000613856 MYH15Q9Y2K3 1946 aa13.25□□□□□ -0.29
SLIRP-212ENST00000613856 TNPO2O14787 897 aaKnown RBP13.24□□□□□ -0.29
SLIRP-212ENST00000613856 PLEKHA8P1O95397 391 aa13.24□□□□□ -0.29
SLIRP-212ENST00000613856 MAGEA10P43363 369 aaPredicted RBP13.24□□□□□ -0.29
SLIRP-212ENST00000613856 ATP2B2Q01814 1243 aa13.24□□□□□ -0.29
SLIRP-212ENST00000613856 SSRP1Q08945 709 aaKnown RBP13.24□□□□□ -0.29
SLIRP-212ENST00000613856 ZNF543Q08ER8 600 aa13.24□□□□□ -0.29
SLIRP-212ENST00000613856 GPATCH4Q5T3I0 446 aaKnown RBP13.24□□□□□ -0.29
SLIRP-212ENST00000613856 FAM184AQ8NB25 1140 aa13.24□□□□□ -0.29
SLIRP-212ENST00000613856 WASF1Q92558 559 aa13.24□□□□□ -0.29
SLIRP-212ENST00000613856 DDX11Q96FC9 970 aa13.24□□□□□ -0.29
SLIRP-212ENST00000613856 SPZ1Q9BXG8 430 aa13.24□□□□□ -0.29
SLIRP-212ENST00000613856 MTMR10Q9NXD2 777 aa13.24□□□□□ -0.29
SLIRP-212ENST00000613856 ZHX2Q9Y6X8 837 aa13.24□□□□□ -0.29
SLIRP-212ENST00000613856 PRUNE2Q8WUY3 3088 aa13.24□□□□□ -0.29
SLIRP-212ENST00000613856 PARP14Q460N5 1801 aa13.24□□□□□ -0.29
SLIRP-212ENST00000613856 LOC285556D6RIA3 1793 aa13.23□□□□□ -0.29
SLIRP-212ENST00000613856 A0A1W2PRG0 241 aa13.23□□□□□ -0.29
SLIRP-212ENST00000613856 USP17L5A8MUK1 530 aa13.23□□□□□ -0.29
SLIRP-212ENST00000613856 PRPF3O43395 683 aaKnown RBP13.23□□□□□ -0.29
SLIRP-212ENST00000613856 STX6O43752 255 aa13.23□□□□□ -0.29
SLIRP-212ENST00000613856 DEXIO95424 95 aa13.23□□□□□ -0.29
SLIRP-212ENST00000613856 BRD1O95696 1058 aa13.23□□□□□ -0.29
SLIRP-212ENST00000613856 PTPRAP18433 802 aa13.23□□□□□ -0.29
SLIRP-212ENST00000613856 SYT1P21579 422 aa13.23□□□□□ -0.29
SLIRP-212ENST00000613856 SLFN13Q68D06 897 aa13.23□□□□□ -0.29
SLIRP-212ENST00000613856 STAG2Q8N3U4 1231 aa13.23□□□□□ -0.29
SLIRP-212ENST00000613856 SRBD1Q8N5C6 995 aaKnown RBP13.23□□□□□ -0.29
SLIRP-212ENST00000613856 ANKRD13CQ8N6S4 541 aa13.23□□□□□ -0.29
SLIRP-212ENST00000613856 PHKBQ93100 1093 aa13.23□□□□□ -0.29
SLIRP-212ENST00000613856 WDR18Q9BV38 432 aa13.23□□□□□ -0.29
SLIRP-212ENST00000613856 SLC26A6Q9BXS9 759 aa13.23□□□□□ -0.29
SLIRP-212ENST00000613856 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.23□□□□□ -0.29
SLIRP-212ENST00000613856 AS3MTQ9HBK9 375 aa13.23□□□□□ -0.29
SLIRP-212ENST00000613856 GOPCQ9HD26 462 aa13.23□□□□□ -0.29
SLIRP-212ENST00000613856 PICK1Q9NRD5 415 aa13.23□□□□□ -0.29
SLIRP-212ENST00000613856 STXBP5LQ9Y2K9 1186 aa13.23□□□□□ -0.29
SLIRP-212ENST00000613856 AFG3L2Q9Y4W6 797 aa13.23□□□□□ -0.29
SLIRP-212ENST00000613856 DNAH12Q6ZR08 3092 aa13.22□□□□□ -0.29
SLIRP-212ENST00000613856 KLRF2D3W0D1 207 aa13.22□□□□□ -0.29
SLIRP-212ENST00000613856 F5H6K3 240 aa13.22□□□□□ -0.29
SLIRP-212ENST00000613856 CXCL11O14625 94 aa13.22□□□□□ -0.29
SLIRP-212ENST00000613856 PEX10O60683 326 aa13.22□□□□□ -0.29
SLIRP-212ENST00000613856 NDUFB10O96000 172 aa13.22□□□□□ -0.29
SLIRP-212ENST00000613856 BMP8BP34820 402 aa13.22□□□□□ -0.29
SLIRP-212ENST00000613856 KLRC3Q07444 240 aa13.22□□□□□ -0.29
SLIRP-212ENST00000613856 IRF5Q13568 498 aa13.22□□□□□ -0.29
SLIRP-212ENST00000613856 TREML2Q5T2D2 321 aa13.22□□□□□ -0.29
SLIRP-212ENST00000613856 LARP1BQ659C4 914 aaKnown RBP13.22□□□□□ -0.29
SLIRP-212ENST00000613856 USP17L2Q6R6M4 530 aa13.22□□□□□ -0.29
SLIRP-212ENST00000613856 RASGRP2Q7LDG7 609 aa13.22□□□□□ -0.29
SLIRP-212ENST00000613856 ACER1Q8TDN7 264 aa13.22□□□□□ -0.29
SLIRP-212ENST00000613856 PXYLP1Q8TE99 480 aa13.22□□□□□ -0.29
SLIRP-212ENST00000613856 KIAA1683Q9H0B3 1180 aa13.22□□□□□ -0.29
SLIRP-212ENST00000613856 VCPKMTQ9H867 229 aa13.22□□□□□ -0.29
SLIRP-212ENST00000613856 FRMPD3Q5JV73 1810 aa13.21□□□□□ -0.29
SLIRP-212ENST00000613856 TRIM75PA6NK02 468 aa13.21□□□□□ -0.29
SLIRP-212ENST00000613856 SLC1A4P43007 532 aa13.21□□□□□ -0.29
SLIRP-212ENST00000613856 AKAP17AQ02040 695 aaKnown RBP13.21□□□□□ -0.29
SLIRP-212ENST00000613856 PKP1Q13835 747 aa13.21□□□□□ -0.29
SLIRP-212ENST00000613856 CCDC96Q2M329 555 aa13.21□□□□□ -0.29
SLIRP-212ENST00000613856 SLC35G1Q2M3R5 365 aa13.21□□□□□ -0.29
SLIRP-212ENST00000613856 NECAB2Q7Z6G3 386 aa13.21□□□□□ -0.29
SLIRP-212ENST00000613856 FAM177A1Q8N128 213 aaPredicted RBP13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms