RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 RASGRP4Q8TDF6 673 aa16.37■□□□□ 0.21
USP39-220ENST00000613444 RRAGCQ9HB90 399 aa16.37■□□□□ 0.21
USP39-220ENST00000613444 FBXO28Q9NVF7 368 aa16.37■□□□□ 0.21
USP39-220ENST00000613444 AFG3L2Q9Y4W6 797 aa16.37■□□□□ 0.21
USP39-220ENST00000613444 MBD3O95983 291 aa16.36■□□□□ 0.21
USP39-220ENST00000613444 IKQ13123 557 aaPredicted RBP16.36■□□□□ 0.21
USP39-220ENST00000613444 SLC39A14Q15043 492 aa16.36■□□□□ 0.21
USP39-220ENST00000613444 CHURC1Q8WUH1 139 aa16.36■□□□□ 0.21
USP39-220ENST00000613444 FEM1BQ9UK73 627 aa16.36■□□□□ 0.21
USP39-220ENST00000613444 VCAM1P19320 739 aa16.36■□□□□ 0.21
USP39-220ENST00000613444 GNA11P29992 359 aa16.36■□□□□ 0.21
USP39-220ENST00000613444 USP14P54578 494 aa16.36■□□□□ 0.21
USP39-220ENST00000613444 MOB2Q70IA6 237 aa16.36■□□□□ 0.21
USP39-220ENST00000613444 FAM160B2Q86V87 743 aa16.36■□□□□ 0.21
USP39-220ENST00000613444 C12orf42Q96LP6 360 aa16.36■□□□□ 0.21
USP39-220ENST00000613444 RANBP17Q9H2T7 1088 aaKnown RBP16.36■□□□□ 0.21
USP39-220ENST00000613444 C6orf50Q9HD87 102 aa16.36■□□□□ 0.21
USP39-220ENST00000613444 PCDHB6Q9Y5E3 794 aa16.36■□□□□ 0.21
USP39-220ENST00000613444 MAP1SQ66K74 1059 aaPredicted RBP16.35■□□□□ 0.21
USP39-220ENST00000613444 PIK3AP1Q6ZUJ8 805 aa16.35■□□□□ 0.21
USP39-220ENST00000613444 TRIM75PA6NK02 468 aa16.34■□□□□ 0.21
USP39-220ENST00000613444 SPTLC2O15270 562 aa16.34■□□□□ 0.21
USP39-220ENST00000613444 NF2P35240 595 aa16.34■□□□□ 0.21
USP39-220ENST00000613444 IREB2P48200 963 aaKnown RBP16.34■□□□□ 0.21
USP39-220ENST00000613444 KCNG4Q8TDN1 519 aa16.34■□□□□ 0.21
USP39-220ENST00000613444 AMNQ9BXJ7 453 aa16.34■□□□□ 0.21
USP39-220ENST00000613444 RIC8AQ9NPQ8 531 aa16.34■□□□□ 0.21
USP39-220ENST00000613444 PCDHA7Q9UN72 937 aa16.34■□□□□ 0.21
USP39-220ENST00000613444 PCDHA1Q9Y5I3 950 aa16.34■□□□□ 0.21
USP39-220ENST00000613444 MYH7BA7E2Y1 1941 aa16.34■□□□□ 0.21
USP39-220ENST00000613444 C19orf81C9J6K1 198 aa16.34■□□□□ 0.21
USP39-220ENST00000613444 CLK2P49760 499 aaKnown RBP16.34■□□□□ 0.21
USP39-220ENST00000613444 STK38Q15208 465 aa16.34■□□□□ 0.21
USP39-220ENST00000613444 CNKSR2Q8WXI2 1034 aa16.34■□□□□ 0.21
USP39-220ENST00000613444 KIFC2Q96AC6 838 aa16.34■□□□□ 0.21
USP39-220ENST00000613444 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.34■□□□□ 0.21
USP39-220ENST00000613444 CLEC11AQ9Y240 323 aa16.34■□□□□ 0.21
USP39-220ENST00000613444 LOC285556D6RIA3 1793 aa16.33■□□□□ 0.21
USP39-220ENST00000613444 COL11A1P12107 1806 aaPredicted RBP16.33■□□□□ 0.21
USP39-220ENST00000613444 TRAF5O00463 557 aa16.33■□□□□ 0.2
USP39-220ENST00000613444 TRAPPC10P48553 1259 aa16.33■□□□□ 0.2
USP39-220ENST00000613444 ADCY7P51828 1080 aa16.33■□□□□ 0.2
USP39-220ENST00000613444 HMGCS2P54868 508 aa16.33■□□□□ 0.2
USP39-220ENST00000613444 FMR1Q06787 632 aaKnown RBP eCLIP16.33■□□□□ 0.23e-6■■■□□ 16.1
USP39-220ENST00000613444 FBXO11Q86XK2 927 aa16.33■□□□□ 0.2
USP39-220ENST00000613444 CLMNQ96JQ2 1002 aa16.33■□□□□ 0.2
USP39-220ENST00000613444 CSADQ9Y600 493 aa16.33■□□□□ 0.2
USP39-220ENST00000613444 TAL1P17542 331 aaPredicted RBP16.33■□□□□ 0.2
USP39-220ENST00000613444 SH3D19Q5HYK7 790 aa16.33■□□□□ 0.2
USP39-220ENST00000613444 AXDND1Q5T1B0 1012 aaPredicted RBP16.33■□□□□ 0.2
USP39-220ENST00000613444 ANKRD13AQ8IZ07 590 aa16.33■□□□□ 0.2
USP39-220ENST00000613444 REXO1Q8N1G1 1221 aaKnown RBP16.33■□□□□ 0.2
USP39-220ENST00000613444 BICD2Q8TD16 824 aa16.33■□□□□ 0.2
USP39-220ENST00000613444 RPAP3Q9H6T3 665 aaPredicted RBP16.33■□□□□ 0.2
USP39-220ENST00000613444 NMRK2Q9NPI5 230 aa16.33■□□□□ 0.2
USP39-220ENST00000613444 TMEM63CQ9P1W3 806 aa16.33■□□□□ 0.2
USP39-220ENST00000613444 MORC2Q9Y6X9 1032 aaPredicted RBP16.33■□□□□ 0.2
USP39-220ENST00000613444 OPLAHO14841 1288 aa16.32■□□□□ 0.2
USP39-220ENST00000613444 PPP6R2O75170 966 aa16.32■□□□□ 0.2
USP39-220ENST00000613444 CAVIN1Q6NZI2 390 aaKnown RBP16.32■□□□□ 0.2
USP39-220ENST00000613444 PRPF38AQ8NAV1 312 aaKnown RBP16.32■□□□□ 0.2
USP39-220ENST00000613444 SLF1Q9BQI6 1058 aa16.32■□□□□ 0.2
USP39-220ENST00000613444 TMEM260Q9NX78 707 aa16.32■□□□□ 0.2
USP39-220ENST00000613444 BIN2Q9UBW5 565 aaPredicted RBP16.32■□□□□ 0.2
USP39-220ENST00000613444 NOL7Q9UMY1 257 aaKnown RBP16.32■□□□□ 0.2
USP39-220ENST00000613444 LIG1P18858 919 aa16.31■□□□□ 0.2
USP39-220ENST00000613444 ATP2B1P20020 1258 aa16.31■□□□□ 0.2
USP39-220ENST00000613444 MARCKSP29966 332 aaPredicted RBP16.31■□□□□ 0.2
USP39-220ENST00000613444 ME1P48163 572 aa16.31■□□□□ 0.2
USP39-220ENST00000613444 TPRNQ4KMQ1 711 aa16.31■□□□□ 0.2
USP39-220ENST00000613444 TTC38Q5R3I4 469 aa16.31■□□□□ 0.2
USP39-220ENST00000613444 LDLRAD1Q5T700 205 aa16.31■□□□□ 0.2
USP39-220ENST00000613444 ADALQ6DHV7 355 aa16.31■□□□□ 0.2
USP39-220ENST00000613444 KRT25Q7Z3Z0 450 aa16.31■□□□□ 0.2
USP39-220ENST00000613444 LDHDQ86WU2 507 aa16.31■□□□□ 0.2
USP39-220ENST00000613444 PSTPIP2Q9H939 334 aa16.31■□□□□ 0.2
USP39-220ENST00000613444 ZNF536O15090 1300 aa16.31■□□□□ 0.2
USP39-220ENST00000613444 CCDC194A0A1B0GVG4 234 aa16.31■□□□□ 0.2
USP39-220ENST00000613444 USH1GQ495M9 461 aa16.31■□□□□ 0.2
USP39-220ENST00000613444 CUL5Q93034 780 aa16.31■□□□□ 0.2
USP39-220ENST00000613444 GZF1Q9H116 711 aaPredicted RBP16.31■□□□□ 0.2
USP39-220ENST00000613444 ELP3Q9H9T3 547 aa16.31■□□□□ 0.2
USP39-220ENST00000613444 PPP1R9AQ9ULJ8 1098 aa16.31■□□□□ 0.2
USP39-220ENST00000613444 SPDYE5A6NIY4 337 aa16.3■□□□□ 0.2
USP39-220ENST00000613444 MEIS2O14770 477 aa16.3■□□□□ 0.2
USP39-220ENST00000613444 EDIL3O43854 480 aa16.3■□□□□ 0.2
USP39-220ENST00000613444 MRPL12P52815 198 aaKnown RBP16.3■□□□□ 0.2
USP39-220ENST00000613444 PPATQ06203 517 aa16.3■□□□□ 0.2
USP39-220ENST00000613444 UBE2SQ16763 222 aa16.3■□□□□ 0.2
USP39-220ENST00000613444 INF2Q27J81 1249 aa16.3■□□□□ 0.2
USP39-220ENST00000613444 JAKMIP3Q5VZ66 844 aa16.3■□□□□ 0.2
USP39-220ENST00000613444 RBM46Q8TBY0 533 aaKnown RBP16.3■□□□□ 0.2
USP39-220ENST00000613444 TANGO6Q9C0B7 1094 aa16.3■□□□□ 0.2
USP39-220ENST00000613444 A0A1W2PQ27 194 aa16.3■□□□□ 0.2
USP39-220ENST00000613444 A0A1W2PQ64 194 aa16.3■□□□□ 0.2
USP39-220ENST00000613444 A0A1W2PQD8 194 aa16.3■□□□□ 0.2
USP39-220ENST00000613444 FLOT1O75955 427 aa16.3■□□□□ 0.2
USP39-220ENST00000613444 CCDC174Q6PII3 467 aa16.3■□□□□ 0.2
USP39-220ENST00000613444 ARMC9Q7Z3E5 817 aa16.3■□□□□ 0.2
USP39-220ENST00000613444 ERO1BQ86YB8 467 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms