RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 ASB14A6NK59 587 aa7.51□□□□□ -1.21
CUX1-220ENST00000607092 F5H6K3 240 aa7.51□□□□□ -1.21
CUX1-220ENST00000607092 ARVCFO00192 962 aa7.51□□□□□ -1.21
CUX1-220ENST00000607092 APBB1O00213 710 aa7.51□□□□□ -1.21
CUX1-220ENST00000607092 CDK7P50613 346 aa7.51□□□□□ -1.21
CUX1-220ENST00000607092 NKX3-2P78367 333 aa7.51□□□□□ -1.21
CUX1-220ENST00000607092 MRPS5P82675 430 aaKnown RBP7.51□□□□□ -1.21
CUX1-220ENST00000607092 KLRC3Q07444 240 aa7.51□□□□□ -1.21
CUX1-220ENST00000607092 GNASQ5JWF2 1037 aa7.51□□□□□ -1.21
CUX1-220ENST00000607092 SIAH1Q8IUQ4 282 aa7.51□□□□□ -1.21
CUX1-220ENST00000607092 ZNF444Q8N0Y2 327 aaPredicted RBP7.51□□□□□ -1.21
CUX1-220ENST00000607092 CHURC1Q8WUH1 139 aa7.51□□□□□ -1.21
CUX1-220ENST00000607092 DYNLL2Q96FJ2 89 aa7.51□□□□□ -1.21
CUX1-220ENST00000607092 MPHOSPH6Q99547 160 aaKnown RBP7.51□□□□□ -1.21
CUX1-220ENST00000607092 HAUS7Q99871 368 aa7.51□□□□□ -1.21
CUX1-220ENST00000607092 NACAP1Q9BZK3 213 aa7.51□□□□□ -1.21
CUX1-220ENST00000607092 AP5M1Q9H0R1 490 aa7.51□□□□□ -1.21
CUX1-220ENST00000607092 UPF3AQ9H1J1 476 aaKnown RBP7.51□□□□□ -1.21
CUX1-220ENST00000607092 SLC28A3Q9HAS3 691 aa7.51□□□□□ -1.21
CUX1-220ENST00000607092 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.51□□□□□ -1.21
CUX1-220ENST00000607092 PNMA2Q9UL42 364 aa7.51□□□□□ -1.21
CUX1-220ENST00000607092 TNNQ9UQP3 1299 aa7.51□□□□□ -1.21
CUX1-220ENST00000607092 CHD9Q3L8U1 2897 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 MYO9BQ13459 2157 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 MYO5AQ9Y4I1 1855 aaKnown RBP7.5□□□□□ -1.21
CUX1-220ENST00000607092 DNAJC25-GNG10A0A024R161 153 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 LOC102724159A0A0B4J2E5 919 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 FGBP02675 491 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 ASGR1P07306 291 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 PFKMP08237 780 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 SUPT20HL2P0C7V6 817 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 CYP2D6P10635 497 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 PDE4BQ07343 736 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 GRIN2CQ14957 1233 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 PWP2Q15269 919 aaKnown RBP7.5□□□□□ -1.21
CUX1-220ENST00000607092 BRDTQ58F21 947 aaPredicted RBP7.5□□□□□ -1.21
CUX1-220ENST00000607092 KIAA1755Q5JYT7 1200 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 RASIP1Q5U651 963 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 CCSAPQ6IQ19 270 aaPredicted RBP7.5□□□□□ -1.21
CUX1-220ENST00000607092 FAM160B2Q86V87 743 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 GMCL1P1Q8NEA9 526 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 REPS2Q8NFH8 660 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 MKL1Q969V6 931 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.5□□□□□ -1.214e-9■□□□□ 10
CUX1-220ENST00000607092 LRRCC1Q9C099 1032 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 BOLA2Q9H3K6 86 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 ACAD9Q9H845 621 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 SLC38A10Q9HBR0 1119 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 IL23AQ9NPF7 189 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 FBXO28Q9NVF7 368 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 Q9Y3F1 56 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 CDH23Q9H251 3354 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 MYH8P13535 1937 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 TRANK1O15050 2925 aa7.5□□□□□ -1.21
CUX1-220ENST00000607092 PRKAB2O43741 272 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 SNAI1O95863 264 aaPredicted RBP7.49□□□□□ -1.21
CUX1-220ENST00000607092 TTLL1O95922 423 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 NDUFB10O96000 172 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 BMP3P12645 472 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 TAL1P17542 331 aaPredicted RBP7.49□□□□□ -1.21
CUX1-220ENST00000607092 ITGB8P26012 769 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 TDO2P48775 406 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 STAT2P52630 851 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 EPHB4P54760 987 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 HNRNPUQ00839 825 aaKnown RBP eCLIP7.49□□□□□ -1.211e-6■■■■□ 21.8
CUX1-220ENST00000607092 TNFAIP2Q03169 654 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 CCDC144BQ3MJ40 725 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 TMEM240Q5SV17 173 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 CTR9Q6PD62 1173 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 NOL8Q76FK4 1167 aaKnown RBP7.49□□□□□ -1.21
CUX1-220ENST00000607092 FAM126BQ8IXS8 530 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 CPXCR1Q8N123 301 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 HERVK_113Q902F9 699 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 KIFC2Q96AC6 838 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 ASB2Q96Q27 587 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 C1QTNF1Q9BXJ1 281 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 ECHDC1Q9NTX5 307 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 ADD3Q9UEY8 706 aaKnown RBP7.49□□□□□ -1.21
CUX1-220ENST00000607092 COG6Q9Y2V7 657 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 PRUNE2Q8WUY3 3088 aa7.49□□□□□ -1.21
CUX1-220ENST00000607092 SMCHD1A6NHR9 2005 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 MINDY4BA8MYZ0 360 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 B4DLN1 442 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 PLA2G6O60733 806 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 TSPY3P0CV98 308 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 TSPY8P0CW00 308 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 RLBP1P12271 317 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 ACTN1P12814 892 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 CSF2RAP15509 400 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 RASA1P20936 1047 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 RFC2P35250 354 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 MRPL12P52815 198 aaKnown RBP7.48□□□□□ -1.21
CUX1-220ENST00000607092 IKQ13123 557 aaPredicted RBP7.48□□□□□ -1.21
CUX1-220ENST00000607092 IQSEC1Q6DN90 963 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 ZNF365Q70YC5 407 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 ARMCX2Q7L311 632 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 CLEC10AQ8IUN9 316 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 KBTBD3Q8NAB2 608 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 APPBP2Q92624 585 aa7.48□□□□□ -1.21
CUX1-220ENST00000607092 GMCL1Q96IK5 515 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms