RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 SEZ6LQ9BYH1 1024 aa11.39□□□□□ -0.59
VRK3-224ENST00000601849 NAPBQ9H115 298 aa11.39□□□□□ -0.59
VRK3-224ENST00000601849 RAVER2Q9HCJ3 691 aaKnown RBP11.39□□□□□ -0.59
VRK3-224ENST00000601849 RIPK3Q9Y572 518 aa11.39□□□□□ -0.59
VRK3-224ENST00000601849 A0A0U1RQG5 324 aaPredicted RBP11.38□□□□□ -0.59
VRK3-224ENST00000601849 ASB14A6NK59 587 aa11.38□□□□□ -0.59
VRK3-224ENST00000601849 TMEM232C9JQI7 657 aa11.38□□□□□ -0.59
VRK3-224ENST00000601849 SMIM22K7EJ46 135 aa11.38□□□□□ -0.59
VRK3-224ENST00000601849 PRDM1O75626 825 aa11.38□□□□□ -0.59
VRK3-224ENST00000601849 CABYRO75952 493 aa11.38□□□□□ -0.59
VRK3-224ENST00000601849 CHGBP05060 677 aa11.38□□□□□ -0.59
VRK3-224ENST00000601849 CST5P28325 142 aaPredicted RBP11.38□□□□□ -0.59
VRK3-224ENST00000601849 SLC1A4P43007 532 aa11.38□□□□□ -0.59
VRK3-224ENST00000601849 GJA9P57773 515 aa11.38□□□□□ -0.59
VRK3-224ENST00000601849 TFAP4Q01664 338 aa11.38□□□□□ -0.59
VRK3-224ENST00000601849 TKFCQ3LXA3 575 aa11.38□□□□□ -0.59
VRK3-224ENST00000601849 NEDD1Q8NHV4 660 aa11.38□□□□□ -0.59
VRK3-224ENST00000601849 CEP95Q96GE4 821 aa11.38□□□□□ -0.59
VRK3-224ENST00000601849 AP5M1Q9H0R1 490 aa11.38□□□□□ -0.59
VRK3-224ENST00000601849 DCTPP1Q9H773 170 aa11.38□□□□□ -0.59
VRK3-224ENST00000601849 ACAD9Q9H845 621 aa11.38□□□□□ -0.59
VRK3-224ENST00000601849 ZNFX1Q9P2E3 1918 aaKnown RBP11.38□□□□□ -0.59
VRK3-224ENST00000601849 BAZ2AQ9UIF9 1905 aaKnown RBP11.38□□□□□ -0.59
VRK3-224ENST00000601849 TTC41PQ6P2S7 1318 aa11.37□□□□□ -0.59
VRK3-224ENST00000601849 VCANP13611 3396 aa11.37□□□□□ -0.59
VRK3-224ENST00000601849 ARVCFO00192 962 aa11.37□□□□□ -0.59
VRK3-224ENST00000601849 TNFAIP2Q03169 654 aa11.37□□□□□ -0.59
VRK3-224ENST00000601849 PSRC1Q6PGN9 363 aaPredicted RBP11.37□□□□□ -0.59
VRK3-224ENST00000601849 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.37□□□□□ -0.59
VRK3-224ENST00000601849 ARMCX2Q7L311 632 aa11.37□□□□□ -0.59
VRK3-224ENST00000601849 STAG1Q8WVM7 1258 aa11.37□□□□□ -0.59
VRK3-224ENST00000601849 GAS2L1Q99501 681 aaPredicted RBP11.37□□□□□ -0.59
VRK3-224ENST00000601849 FSD1Q9BTV5 496 aa11.37□□□□□ -0.59
VRK3-224ENST00000601849 HOMER2Q9NSB8 354 aa11.37□□□□□ -0.59
VRK3-224ENST00000601849 STX8Q9UNK0 236 aa11.37□□□□□ -0.59
VRK3-224ENST00000601849 EYSQ5T1H1 3165 aa11.37□□□□□ -0.59
VRK3-224ENST00000601849 IGKV6D-41A0A0C4DH26 115 aa11.36□□□□□ -0.59
VRK3-224ENST00000601849 TSPY2A6NKD2 308 aa11.36□□□□□ -0.59
VRK3-224ENST00000601849 DNAJB2P25686 324 aa11.36□□□□□ -0.59
VRK3-224ENST00000601849 ITGB8P26012 769 aa11.36□□□□□ -0.59
VRK3-224ENST00000601849 CDK7P50613 346 aa11.36□□□□□ -0.59
VRK3-224ENST00000601849 CCSAPQ6IQ19 270 aaPredicted RBP11.36□□□□□ -0.59
VRK3-224ENST00000601849 CCDC144CPQ8IYA2 1237 aa11.36□□□□□ -0.59
VRK3-224ENST00000601849 LRRC47Q8N1G4 583 aaKnown RBP11.36□□□□□ -0.59
VRK3-224ENST00000601849 LENG1Q96BZ8 264 aaPredicted RBP11.36□□□□□ -0.59
VRK3-224ENST00000601849 TIFAQ96CG3 184 aa11.36□□□□□ -0.59
VRK3-224ENST00000601849 GMCL1Q96IK5 515 aa11.36□□□□□ -0.59
VRK3-224ENST00000601849 TTYH1Q9H313 450 aaPredicted RBP11.36□□□□□ -0.59
VRK3-224ENST00000601849 ZNF576Q9H609 170 aa11.36□□□□□ -0.59
VRK3-224ENST00000601849 MSRAQ9UJ68 235 aa11.36□□□□□ -0.59
VRK3-224ENST00000601849 CDH23Q9H251 3354 aa11.36□□□□□ -0.59
VRK3-224ENST00000601849 LTBP2Q14767 1821 aa11.36□□□□□ -0.59
VRK3-224ENST00000601849 COL11A1P12107 1806 aaPredicted RBP11.35□□□□□ -0.59
VRK3-224ENST00000601849 PLA2G6O60733 806 aa11.35□□□□□ -0.59
VRK3-224ENST00000601849 ALAS1P13196 640 aa11.35□□□□□ -0.59
VRK3-224ENST00000601849 MCCP23508 829 aa11.35□□□□□ -0.59
VRK3-224ENST00000601849 EPHB4P54760 987 aa11.35□□□□□ -0.59
VRK3-224ENST00000601849 PPARAQ07869 468 aa11.35□□□□□ -0.59
VRK3-224ENST00000601849 IQSEC1Q6DN90 963 aa11.35□□□□□ -0.59
VRK3-224ENST00000601849 RCSD1Q6JBY9 416 aa11.35□□□□□ -0.59
VRK3-224ENST00000601849 RPUSD2Q8IZ73 545 aaKnown RBP11.35□□□□□ -0.59
VRK3-224ENST00000601849 TRERF1Q96PN7 1200 aa11.35□□□□□ -0.59
VRK3-224ENST00000601849 MPHOSPH6Q99547 160 aaKnown RBP11.35□□□□□ -0.59
VRK3-224ENST00000601849 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.35□□□□□ -0.597e-6■□□□□ 9.4
VRK3-224ENST00000601849 UPF3AQ9H1J1 476 aaKnown RBP11.35□□□□□ -0.59
VRK3-224ENST00000601849 RNF146Q9NTX7 359 aa11.35□□□□□ -0.59
VRK3-224ENST00000601849 ADD3Q9UEY8 706 aaKnown RBP11.35□□□□□ -0.59
VRK3-224ENST00000601849 TBX21Q9UL17 535 aa11.35□□□□□ -0.59
VRK3-224ENST00000601849 PLXNA1Q9UIW2 1896 aa11.35□□□□□ -0.59
VRK3-224ENST00000601849 SMCHD1A6NHR9 2005 aa11.35□□□□□ -0.59
VRK3-224ENST00000601849 M0R2C6 588 aa11.34□□□□□ -0.59
VRK3-224ENST00000601849 DYNC1LI2O43237 492 aaPredicted RBP11.34□□□□□ -0.59
VRK3-224ENST00000601849 FGBP02675 491 aa11.34□□□□□ -0.59
VRK3-224ENST00000601849 RAB30Q15771 203 aa11.34□□□□□ -0.59
VRK3-224ENST00000601849 BRDTQ58F21 947 aaPredicted RBP11.34□□□□□ -0.59
VRK3-224ENST00000601849 TSPYL2Q9H2G4 693 aaPredicted RBP11.34□□□□□ -0.59
VRK3-224ENST00000601849 PNMA2Q9UL42 364 aa11.34□□□□□ -0.59
VRK3-224ENST00000601849 Q9Y3F1 56 aa11.34□□□□□ -0.59
VRK3-224ENST00000601849 MYH7P12883 1935 aa11.34□□□□□ -0.59
VRK3-224ENST00000601849 PARP14Q460N5 1801 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 CUL9Q8IWT3 2517 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 MYADML2A6NDP7 307 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 B4DLN1 442 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 RANBP6O60518 1105 aaKnown RBP11.33□□□□□ -0.6
VRK3-224ENST00000601849 SUPT20HL2P0C7V6 817 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 CSF2RAP15509 400 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 MRPL12P52815 198 aaKnown RBP11.33□□□□□ -0.6
VRK3-224ENST00000601849 NKX3-2P78367 333 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 CNTN2Q02246 1040 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 ITGA7Q13683 1181 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 GRIN2CQ14957 1233 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 FSCN1Q16658 493 aaKnown RBP11.33□□□□□ -0.6
VRK3-224ENST00000601849 TJAP1Q5JTD0 557 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 TMEM240Q5SV17 173 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 TSHZ3Q63HK5 1081 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 ZNF365Q70YC5 407 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 TLK2Q86UE8 772 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 FAM126BQ8IXS8 530 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 FAM133AQ8N9E0 248 aa11.33□□□□□ -0.6
VRK3-224ENST00000601849 IL27Q8NEV9 243 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms