RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 SPATA31A5Q5VU36 1347 aa20.54■□□□□ 0.88
UPF1-210ENST00000600689 MROH5Q6ZUA9 1318 aa20.54■□□□□ 0.88
UPF1-210ENST00000600689 SPATA31A7Q8IWB4 1347 aa20.54■□□□□ 0.88
UPF1-210ENST00000600689 MNAT1P51948 309 aa20.54■□□□□ 0.88
UPF1-210ENST00000600689 WDR59Q6PJI9 974 aa20.54■□□□□ 0.88
UPF1-210ENST00000600689 CTCFLQ8NI51 663 aaPredicted RBP20.54■□□□□ 0.88
UPF1-210ENST00000600689 FAM107BQ9H098 131 aa20.54■□□□□ 0.88
UPF1-210ENST00000600689 COL4A1P02462 1669 aa20.53■□□□□ 0.88
UPF1-210ENST00000600689 ERLIN2O94905 339 aa20.53■□□□□ 0.88
UPF1-210ENST00000600689 IRAK1P51617 712 aa20.53■□□□□ 0.88
UPF1-210ENST00000600689 KAT2BQ92831 832 aa20.53■□□□□ 0.88
UPF1-210ENST00000600689 LRRC1Q9BTT6 524 aa20.53■□□□□ 0.88
UPF1-210ENST00000600689 CDCA7Q9BWT1 371 aaPredicted RBP20.53■□□□□ 0.88
UPF1-210ENST00000600689 HAUS4Q9H6D7 363 aa20.53■□□□□ 0.88
UPF1-210ENST00000600689 FAM169AQ9Y6X4 670 aa20.53■□□□□ 0.88
UPF1-210ENST00000600689 EBAG9O00559 213 aa20.53■□□□□ 0.88
UPF1-210ENST00000600689 RPS6KA5O75582 802 aa20.53■□□□□ 0.88
UPF1-210ENST00000600689 NTSR2O95665 410 aa20.53■□□□□ 0.88
UPF1-210ENST00000600689 STAT6P42226 847 aa20.53■□□□□ 0.88
UPF1-210ENST00000600689 FAM98CQ17RN3 349 aaKnown RBP20.53■□□□□ 0.88
UPF1-210ENST00000600689 MB21D1Q8N884 522 aa20.53■□□□□ 0.88
UPF1-210ENST00000600689 MLXIPQ9HAP2 919 aa20.53■□□□□ 0.88
UPF1-210ENST00000600689 THRAP3Q9Y2W1 955 aaKnown RBP20.53■□□□□ 0.88
UPF1-210ENST00000600689 NKRFO15226 690 aaKnown RBP eCLIP20.52■□□□□ 0.88
UPF1-210ENST00000600689 CYP7A1P22680 504 aa20.52■□□□□ 0.88
UPF1-210ENST00000600689 RNASE9P60153 205 aaKnown RBP20.52■□□□□ 0.88
UPF1-210ENST00000600689 IL17AQ16552 155 aa20.52■□□□□ 0.88
UPF1-210ENST00000600689 IFIT1BQ5T764 474 aaKnown RBP20.52■□□□□ 0.88
UPF1-210ENST00000600689 BRMS1Q9HCU9 246 aa20.52■□□□□ 0.88
UPF1-210ENST00000600689 RWDD2AQ9UIY3 292 aa20.52■□□□□ 0.88
UPF1-210ENST00000600689 NRAPQ86VF7 1730 aa20.52■□□□□ 0.88
UPF1-210ENST00000600689 KRT86O43790 486 aa20.52■□□□□ 0.88
UPF1-210ENST00000600689 PDCLQ13371 301 aa20.52■□□□□ 0.88
UPF1-210ENST00000600689 IRF2BP1Q8IU81 584 aa20.52■□□□□ 0.88
UPF1-210ENST00000600689 LRWD1Q9UFC0 647 aa20.52■□□□□ 0.88
UPF1-210ENST00000600689 PHLPP1O60346 1717 aa20.52■□□□□ 0.88
UPF1-210ENST00000600689 SLC5A1P13866 664 aa20.52■□□□□ 0.87
UPF1-210ENST00000600689 CCNI2Q6ZMN8 369 aaPredicted RBP20.52■□□□□ 0.87
UPF1-210ENST00000600689 C3orf67Q6ZVT6 689 aa20.52■□□□□ 0.87
UPF1-210ENST00000600689 MYO1AQ9UBC5 1043 aa20.52■□□□□ 0.87
UPF1-210ENST00000600689 MAGEC2Q9UBF1 373 aaPredicted RBP20.52■□□□□ 0.87
UPF1-210ENST00000600689 ITIH6Q6UXX5 1313 aa20.52■□□□□ 0.87
UPF1-210ENST00000600689 NCK2O43639 380 aa20.51■□□□□ 0.87
UPF1-210ENST00000600689 NAP1L1P55209 391 aaKnown RBP20.51■□□□□ 0.87
UPF1-210ENST00000600689 SPAG1Q07617 926 aa20.51■□□□□ 0.87
UPF1-210ENST00000600689 ANKRD18AQ8IVF6 992 aa20.51■□□□□ 0.87
UPF1-210ENST00000600689 EFCAB13Q8IY85 973 aa20.51■□□□□ 0.87
UPF1-210ENST00000600689 CAPS2Q9BXY5 557 aa20.51■□□□□ 0.87
UPF1-210ENST00000600689 ATP2B2Q01814 1243 aa20.51■□□□□ 0.87
UPF1-210ENST00000600689 BICDL1Q6ZP65 573 aa20.51■□□□□ 0.87
UPF1-210ENST00000600689 PAXIP1Q6ZW49 1069 aaPredicted RBP20.51■□□□□ 0.87
UPF1-210ENST00000600689 ENAHQ8N8S7 591 aaPredicted RBP20.51■□□□□ 0.87
UPF1-210ENST00000600689 ARL8AQ96BM9 186 aa20.51■□□□□ 0.87
UPF1-210ENST00000600689 NHEJ1Q9H9Q4 299 aaPredicted RBP20.51■□□□□ 0.87
UPF1-210ENST00000600689 ZNHIT6Q9NWK9 470 aaKnown RBP20.51■□□□□ 0.87
UPF1-210ENST00000600689 PSMD14O00487 310 aa20.5■□□□□ 0.87
UPF1-210ENST00000600689 UQCRFS1P1P0C7P4 283 aa20.5■□□□□ 0.87
UPF1-210ENST00000600689 FAM47AQ5JRC9 791 aa20.5■□□□□ 0.87
UPF1-210ENST00000600689 ADGRA1Q86SQ6 560 aa20.5■□□□□ 0.87
UPF1-210ENST00000600689 HPS3Q969F9 1004 aa20.5■□□□□ 0.87
UPF1-210ENST00000600689 FERMT2Q96AC1 680 aa20.5■□□□□ 0.87
UPF1-210ENST00000600689 RUFY1Q96T51 708 aa20.5■□□□□ 0.87
UPF1-210ENST00000600689 PHF20Q9BVI0 1012 aa20.5■□□□□ 0.87
UPF1-210ENST00000600689 ZC3H4Q9UPT8 1303 aaKnown RBP20.5■□□□□ 0.87
UPF1-210ENST00000600689 TBC1D8BQ0IIM8 1120 aa20.5■□□□□ 0.87
UPF1-210ENST00000600689 CCDC152Q4G0S7 254 aa20.5■□□□□ 0.87
UPF1-210ENST00000600689 TYW1BQ6NUM6 668 aa20.5■□□□□ 0.87
UPF1-210ENST00000600689 CATIPQ7Z7H3 387 aa20.5■□□□□ 0.87
UPF1-210ENST00000600689 ESYT3A0FGR9 886 aa20.5■□□□□ 0.87
UPF1-210ENST00000600689 H0YHG0 523 aa20.5■□□□□ 0.87
UPF1-210ENST00000600689 MOCS3O95396 460 aa20.5■□□□□ 0.87
UPF1-210ENST00000600689 NFRKBQ6P4R8 1299 aa20.5■□□□□ 0.87
UPF1-210ENST00000600689 GPKOWQ92917 476 aaPredicted RBP eCLIP20.5■□□□□ 0.87
UPF1-210ENST00000600689 A0A087WUV0 522 aaPredicted RBP20.49■□□□□ 0.87
UPF1-210ENST00000600689 SEMA3EO15041 775 aa20.49■□□□□ 0.87
UPF1-210ENST00000600689 GUCY2CP25092 1073 aa20.49■□□□□ 0.87
UPF1-210ENST00000600689 DYNLL1P63167 89 aaKnown RBP20.49■□□□□ 0.87
UPF1-210ENST00000600689 TUBB4BP68371 445 aa20.49■□□□□ 0.87
UPF1-210ENST00000600689 CHRNDQ07001 517 aa20.49■□□□□ 0.87
UPF1-210ENST00000600689 ZNF658Q5TYW1 1059 aaPredicted RBP20.49■□□□□ 0.87
UPF1-210ENST00000600689 STAG1Q8WVM7 1258 aa20.49■□□□□ 0.87
UPF1-210ENST00000600689 RNF26Q9BY78 433 aaPredicted RBP20.49■□□□□ 0.87
UPF1-210ENST00000600689 LRP5O75197 1615 aa20.49■□□□□ 0.87
UPF1-210ENST00000600689 DDX60Q8IY21 1712 aaKnown RBP20.49■□□□□ 0.87
UPF1-210ENST00000600689 GTPBP6O43824 516 aaPredicted RBP20.49■□□□□ 0.87
UPF1-210ENST00000600689 IGHMBP2P38935 993 aaKnown RBP20.49■□□□□ 0.87
UPF1-210ENST00000600689 MTIF2P46199 727 aaKnown RBP20.49■□□□□ 0.87
UPF1-210ENST00000600689 AARSP49588 968 aaKnown RBP eCLIP20.49■□□□□ 0.87
UPF1-210ENST00000600689 CKAP4Q07065 602 aaKnown RBP20.49■□□□□ 0.87
UPF1-210ENST00000600689 PDXDC2PQ6P474 469 aa20.49■□□□□ 0.87
UPF1-210ENST00000600689 ESR2Q92731 530 aa20.49■□□□□ 0.87
UPF1-210ENST00000600689 CENPHQ9H3R5 247 aa20.49■□□□□ 0.87
UPF1-210ENST00000600689 CAPN6Q9Y6Q1 641 aa20.49■□□□□ 0.87
UPF1-210ENST00000600689 TAF1P21675 1872 aa20.49■□□□□ 0.87
UPF1-210ENST00000600689 TUBBP07437 444 aa20.48■□□□□ 0.87
UPF1-210ENST00000600689 KIF5AQ12840 1032 aa20.48■□□□□ 0.87
UPF1-210ENST00000600689 ENOX2Q16206 610 aaKnown RBP20.48■□□□□ 0.87
UPF1-210ENST00000600689 LINC00116Q8NCU8 138 aa20.48■□□□□ 0.87
UPF1-210ENST00000600689 SHTN1A0MZ66 631 aa20.48■□□□□ 0.87
UPF1-210ENST00000600689 KRT83P78385 493 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms