RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 TBX21Q9UL17 535 aa14.91□□□□□ -0.02
TRIM28-212ENST00000597995 PRUNE2Q8WUY3 3088 aa14.9□□□□□ -0.02
TRIM28-212ENST00000597995 PATL2C9JE40 543 aaKnown RBP14.9□□□□□ -0.02
TRIM28-212ENST00000597995 FOSL2P15408 326 aa14.9□□□□□ -0.02
TRIM28-212ENST00000597995 SLC4A3P48751 1232 aa14.9□□□□□ -0.02
TRIM28-212ENST00000597995 GJA9P57773 515 aa14.9□□□□□ -0.02
TRIM28-212ENST00000597995 NKX3-2P78367 333 aa14.9□□□□□ -0.02
TRIM28-212ENST00000597995 CCDC144BQ3MJ40 725 aa14.9□□□□□ -0.02
TRIM28-212ENST00000597995 MFSD5Q6N075 450 aa14.9□□□□□ -0.02
TRIM28-212ENST00000597995 NEDD1Q8NHV4 660 aa14.9□□□□□ -0.02
TRIM28-212ENST00000597995 FGD4Q96M96 766 aa14.9□□□□□ -0.02
TRIM28-212ENST00000597995 MYH4Q9Y623 1939 aa14.9□□□□□ -0.02
TRIM28-212ENST00000597995 MYADML2A6NDP7 307 aa14.89□□□□□ -0.03
TRIM28-212ENST00000597995 ARVCFO00192 962 aa14.89□□□□□ -0.03
TRIM28-212ENST00000597995 APPP05067 770 aa14.89□□□□□ -0.03
TRIM28-212ENST00000597995 ASGR1P07306 291 aa14.89□□□□□ -0.03
TRIM28-212ENST00000597995 C6orf222P0C671 652 aaPredicted RBP14.89□□□□□ -0.03
TRIM28-212ENST00000597995 BMP3P12645 472 aa14.89□□□□□ -0.03
TRIM28-212ENST00000597995 CCDC174Q6PII3 467 aa14.89□□□□□ -0.03
TRIM28-212ENST00000597995 ARMCX2Q7L311 632 aa14.89□□□□□ -0.03
TRIM28-212ENST00000597995 IFNL3Q8IZI9 196 aa14.89□□□□□ -0.03
TRIM28-212ENST00000597995 NACAP1Q9BZK3 213 aa14.89□□□□□ -0.03
TRIM28-212ENST00000597995 PLIN4Q96Q06 1357 aa14.88□□□□□ -0.03
TRIM28-212ENST00000597995 A0A0U1RQG5 324 aaPredicted RBP14.88□□□□□ -0.03
TRIM28-212ENST00000597995 ADCY6O43306 1168 aa14.88□□□□□ -0.03
TRIM28-212ENST00000597995 PRDM1O75626 825 aa14.88□□□□□ -0.03
TRIM28-212ENST00000597995 SLC3A2P08195 630 aaKnown RBP14.88□□□□□ -0.03
TRIM28-212ENST00000597995 TSPY3P0CV98 308 aa14.88□□□□□ -0.03
TRIM28-212ENST00000597995 TSPY8P0CW00 308 aa14.88□□□□□ -0.03
TRIM28-212ENST00000597995 DNAJB2P25686 324 aa14.88□□□□□ -0.03
TRIM28-212ENST00000597995 PDE4BQ07343 736 aa14.88□□□□□ -0.03
TRIM28-212ENST00000597995 PPIGQ13427 754 aaKnown RBP eCLIP14.88□□□□□ -0.033e-11■□□□□ 10.2
TRIM28-212ENST00000597995 GNASQ5JWF2 1037 aa14.88□□□□□ -0.03
TRIM28-212ENST00000597995 PPP4R3BQ5MIZ7 849 aa14.88□□□□□ -0.03
TRIM28-212ENST00000597995 SLFN13Q68D06 897 aa14.88□□□□□ -0.03
TRIM28-212ENST00000597995 FAM160B2Q86V87 743 aa14.88□□□□□ -0.03
TRIM28-212ENST00000597995 LRRC47Q8N1G4 583 aaKnown RBP14.88□□□□□ -0.03
TRIM28-212ENST00000597995 PI4K2BQ8TCG2 481 aa14.88□□□□□ -0.03
TRIM28-212ENST00000597995 CHURC1Q8WUH1 139 aa14.88□□□□□ -0.03
TRIM28-212ENST00000597995 VTI1AQ96AJ9 217 aa14.88□□□□□ -0.03
TRIM28-212ENST00000597995 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.88□□□□□ -0.035e-13■□□□□ 10.3
TRIM28-212ENST00000597995 KATNBL1Q9H079 304 aa14.88□□□□□ -0.03
TRIM28-212ENST00000597995 CDH23Q9H251 3354 aa14.88□□□□□ -0.03
TRIM28-212ENST00000597995 SALL3Q9BXA9 1300 aa14.88□□□□□ -0.03
TRIM28-212ENST00000597995 M0R2C6 588 aa14.87□□□□□ -0.03
TRIM28-212ENST00000597995 TLR3O15455 904 aaKnown RBP14.87□□□□□ -0.03
TRIM28-212ENST00000597995 PLA2G6O60733 806 aa14.87□□□□□ -0.03
TRIM28-212ENST00000597995 STAT2P52630 851 aa14.87□□□□□ -0.03
TRIM28-212ENST00000597995 GRIN2CQ14957 1233 aa14.87□□□□□ -0.03
TRIM28-212ENST00000597995 TKFCQ3LXA3 575 aa14.87□□□□□ -0.03
TRIM28-212ENST00000597995 CCDC144CPQ8IYA2 1237 aa14.87□□□□□ -0.03
TRIM28-212ENST00000597995 TMEM199Q8N511 208 aa14.87□□□□□ -0.03
TRIM28-212ENST00000597995 FAM133AQ8N9E0 248 aa14.87□□□□□ -0.03
TRIM28-212ENST00000597995 SYMPKQ92797 1274 aaKnown RBP14.87□□□□□ -0.03
TRIM28-212ENST00000597995 GMCL1Q96IK5 515 aa14.87□□□□□ -0.03
TRIM28-212ENST00000597995 ZNF576Q9H609 170 aa14.87□□□□□ -0.03
TRIM28-212ENST00000597995 ACAD9Q9H845 621 aa14.87□□□□□ -0.03
TRIM28-212ENST00000597995 VCANP13611 3396 aa14.87□□□□□ -0.03
TRIM28-212ENST00000597995 MCM3APO60318 1980 aa14.87□□□□□ -0.03
TRIM28-212ENST00000597995 ASB14A6NK59 587 aa14.86□□□□□ -0.03
TRIM28-212ENST00000597995 TMEM232C9JQI7 657 aa14.86□□□□□ -0.03
TRIM28-212ENST00000597995 CTAGE5O15320 804 aa14.86□□□□□ -0.03
TRIM28-212ENST00000597995 IRX5P78411 483 aaPredicted RBP14.86□□□□□ -0.03
TRIM28-212ENST00000597995 TFAP4Q01664 338 aa14.86□□□□□ -0.03
TRIM28-212ENST00000597995 TMEM240Q5SV17 173 aa14.86□□□□□ -0.03
TRIM28-212ENST00000597995 RASIP1Q5U651 963 aa14.86□□□□□ -0.03
TRIM28-212ENST00000597995 C16orf59Q7L2K0 433 aa14.86□□□□□ -0.03
TRIM28-212ENST00000597995 FAM126BQ8IXS8 530 aa14.86□□□□□ -0.03
TRIM28-212ENST00000597995 STAG1Q8WVM7 1258 aa14.86□□□□□ -0.03
TRIM28-212ENST00000597995 TIFAQ96CG3 184 aa14.86□□□□□ -0.03
TRIM28-212ENST00000597995 SEZ6LQ9BYH1 1024 aa14.86□□□□□ -0.03
TRIM28-212ENST00000597995 TTC41PQ6P2S7 1318 aa14.86□□□□□ -0.03
TRIM28-212ENST00000597995 ERC2O15083 957 aa14.85□□□□□ -0.03
TRIM28-212ENST00000597995 CABYRO75952 493 aa14.85□□□□□ -0.03
TRIM28-212ENST00000597995 CD4P01730 458 aa14.85□□□□□ -0.03
TRIM28-212ENST00000597995 SLC1A4P43007 532 aa14.85□□□□□ -0.03
TRIM28-212ENST00000597995 CNTN2Q02246 1040 aa14.85□□□□□ -0.03
TRIM28-212ENST00000597995 TNFAIP2Q03169 654 aa14.85□□□□□ -0.03
TRIM28-212ENST00000597995 PPARAQ07869 468 aa14.85□□□□□ -0.03
TRIM28-212ENST00000597995 HDAC1Q13547 482 aaPredicted RBP14.85□□□□□ -0.03
TRIM28-212ENST00000597995 CCDC129Q6ZRS4 1044 aa14.85□□□□□ -0.03
TRIM28-212ENST00000597995 SLC43A3Q8NBI5 491 aa14.85□□□□□ -0.03
TRIM28-212ENST00000597995 NAPBQ9H115 298 aa14.85□□□□□ -0.03
TRIM28-212ENST00000597995 A1CFQ9NQ94 594 aaKnown RBP14.85□□□□□ -0.03
TRIM28-212ENST00000597995 HOMER2Q9NSB8 354 aa14.85□□□□□ -0.03
TRIM28-212ENST00000597995 RNF146Q9NTX7 359 aa14.85□□□□□ -0.03
TRIM28-212ENST00000597995 GNEQ9Y223 722 aaKnown RBP14.85□□□□□ -0.03
TRIM28-212ENST00000597995 ZNF536O15090 1300 aa14.85□□□□□ -0.03
TRIM28-212ENST00000597995 SOWAHBA6NEL2 793 aa14.84□□□□□ -0.03
TRIM28-212ENST00000597995 CSF2RAP15509 400 aa14.84□□□□□ -0.03
TRIM28-212ENST00000597995 ZMYM1Q5SVZ6 1142 aa14.84□□□□□ -0.03
TRIM28-212ENST00000597995 PSRC1Q6PGN9 363 aaPredicted RBP14.84□□□□□ -0.03
TRIM28-212ENST00000597995 AGBL1Q96MI9 1066 aa14.84□□□□□ -0.03
TRIM28-212ENST00000597995 SEC62Q99442 399 aaKnown RBP14.84□□□□□ -0.03
TRIM28-212ENST00000597995 MCCP23508 829 aa14.83□□□□□ -0.04
TRIM28-212ENST00000597995 IKQ13123 557 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-212ENST00000597995 ANKRD45Q5TZF3 282 aa14.83□□□□□ -0.04
TRIM28-212ENST00000597995 IQSEC1Q6DN90 963 aa14.83□□□□□ -0.04
TRIM28-212ENST00000597995 RCSD1Q6JBY9 416 aa14.83□□□□□ -0.04
TRIM28-212ENST00000597995 ZNF365Q70YC5 407 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms