RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 B4E1Z4 1266 aa17.77■□□□□ 0.44
TRIM28-205ENST00000595028 CYBAP13498 195 aa17.77■□□□□ 0.44
TRIM28-205ENST00000595028 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.77■□□□□ 0.441e-7■■□□□ 12.1
TRIM28-205ENST00000595028 NECAB2Q7Z6G3 386 aa17.77■□□□□ 0.44
TRIM28-205ENST00000595028 MAML3Q96JK9 1138 aa17.77■□□□□ 0.44
TRIM28-205ENST00000595028 PRUNE2Q8WUY3 3088 aa17.77■□□□□ 0.43
TRIM28-205ENST00000595028 PGK2P07205 417 aa17.76■□□□□ 0.43
TRIM28-205ENST00000595028 PDHBP11177 359 aa17.76■□□□□ 0.43
TRIM28-205ENST00000595028 PTH1RQ03431 593 aa17.76■□□□□ 0.43
TRIM28-205ENST00000595028 CCDC178Q5BJE1 867 aa17.76■□□□□ 0.43
TRIM28-205ENST00000595028 SKAP1Q86WV1 359 aa17.76■□□□□ 0.43
TRIM28-205ENST00000595028 IQCA1Q86XH1 822 aa17.76■□□□□ 0.43
TRIM28-205ENST00000595028 DGKHQ86XP1 1220 aa17.76■□□□□ 0.43
TRIM28-205ENST00000595028 TDHQ8IZJ6 230 aa17.76■□□□□ 0.43
TRIM28-205ENST00000595028 TRPV1Q8NER1 839 aa17.76■□□□□ 0.43
TRIM28-205ENST00000595028 ZKSCAN3Q9BRR0 538 aa17.76■□□□□ 0.43
TRIM28-205ENST00000595028 KRT23Q9C075 422 aa17.76■□□□□ 0.43
TRIM28-205ENST00000595028 CNNM2Q9H8M5 875 aa17.76■□□□□ 0.43
TRIM28-205ENST00000595028 FBXO40Q9UH90 709 aa17.76■□□□□ 0.43
TRIM28-205ENST00000595028 PRR12Q9ULL5 1215 aa17.76■□□□□ 0.43
TRIM28-205ENST00000595028 ZNF536O15090 1300 aa17.75■□□□□ 0.43
TRIM28-205ENST00000595028 SNHG28P0DPA3 235 aa17.75■□□□□ 0.43
TRIM28-205ENST00000595028 MAGEA10P43363 369 aaPredicted RBP17.75■□□□□ 0.43
TRIM28-205ENST00000595028 SLC4A3P48751 1232 aa17.75■□□□□ 0.43
TRIM28-205ENST00000595028 ZNF792Q3KQV3 632 aa17.75■□□□□ 0.43
TRIM28-205ENST00000595028 BMP2KLQ5H9B9 411 aa17.75■□□□□ 0.43
TRIM28-205ENST00000595028 LHX8Q68G74 356 aa17.75■□□□□ 0.43
TRIM28-205ENST00000595028 BTNL9Q6UXG8 535 aa17.75■□□□□ 0.43
TRIM28-205ENST00000595028 CHST13Q8NET6 341 aa17.75■□□□□ 0.43
TRIM28-205ENST00000595028 DIS3Q9Y2L1 958 aaKnown RBP17.75■□□□□ 0.43
TRIM28-205ENST00000595028 U3KPZ7 1027 aaPredicted RBP17.75■□□□□ 0.43
TRIM28-205ENST00000595028 FRMPD2Q68DX3 1309 aaPredicted RBP17.74■□□□□ 0.43
TRIM28-205ENST00000595028 MCM3APO60318 1980 aa17.74■□□□□ 0.43
TRIM28-205ENST00000595028 MSCO60682 206 aa17.74■□□□□ 0.43
TRIM28-205ENST00000595028 CYP21A2P08686 494 aa17.74■□□□□ 0.43
TRIM28-205ENST00000595028 SYN1P17600 705 aa17.74■□□□□ 0.43
TRIM28-205ENST00000595028 TTBK2Q6IQ55 1244 aa17.74■□□□□ 0.43
TRIM28-205ENST00000595028 ZSCAN10Q96SZ4 725 aaPredicted RBP17.74■□□□□ 0.43
TRIM28-205ENST00000595028 HOMER2Q9NSB8 354 aa17.74■□□□□ 0.43
TRIM28-205ENST00000595028 DDX20Q9UHI6 824 aaKnown RBP17.74■□□□□ 0.43
TRIM28-205ENST00000595028 SMCHD1A6NHR9 2005 aa17.74■□□□□ 0.43
TRIM28-205ENST00000595028 TNKSO95271 1327 aa17.73■□□□□ 0.43
TRIM28-205ENST00000595028 LCTP09848 1927 aa17.73■□□□□ 0.43
TRIM28-205ENST00000595028 DNAJC25-GNG10A0A024R161 153 aa17.73■□□□□ 0.43
TRIM28-205ENST00000595028 SLC16A2P36021 539 aa17.73■□□□□ 0.43
TRIM28-205ENST00000595028 ZNF543Q08ER8 600 aa17.73■□□□□ 0.43
TRIM28-205ENST00000595028 TKFCQ3LXA3 575 aa17.73■□□□□ 0.43
TRIM28-205ENST00000595028 SYDE2Q5VT97 1194 aa17.73■□□□□ 0.43
TRIM28-205ENST00000595028 CCDC174Q6PII3 467 aa17.73■□□□□ 0.43
TRIM28-205ENST00000595028 ENAHQ8N8S7 591 aaPredicted RBP17.73■□□□□ 0.43
TRIM28-205ENST00000595028 ANKS1AQ92625 1134 aa17.73■□□□□ 0.43
TRIM28-205ENST00000595028 CCDC136Q96JN2 1154 aa17.73■□□□□ 0.43
TRIM28-205ENST00000595028 AGBL1Q96MI9 1066 aa17.73■□□□□ 0.43
TRIM28-205ENST00000595028 TINF2Q9BSI4 451 aa17.73■□□□□ 0.43
TRIM28-205ENST00000595028 RANBP17Q9H2T7 1088 aaKnown RBP17.73■□□□□ 0.43
TRIM28-205ENST00000595028 ACAD9Q9H845 621 aa17.73■□□□□ 0.43
TRIM28-205ENST00000595028 GPCPD1Q9NPB8 672 aa17.73■□□□□ 0.43
TRIM28-205ENST00000595028 RNF146Q9NTX7 359 aa17.73■□□□□ 0.43
TRIM28-205ENST00000595028 ZSWIM5Q9P217 1185 aa17.73■□□□□ 0.43
TRIM28-205ENST00000595028 LRRC37A2A6NM11 1700 aa17.72■□□□□ 0.43
TRIM28-205ENST00000595028 CNGA1P29973 690 aa17.72■□□□□ 0.43
TRIM28-205ENST00000595028 SNAP25P60880 206 aa17.72■□□□□ 0.43
TRIM28-205ENST00000595028 ANKRD35Q8N283 1001 aa17.72■□□□□ 0.43
TRIM28-205ENST00000595028 PNMA1Q8ND90 353 aa17.72■□□□□ 0.43
TRIM28-205ENST00000595028 DDX11Q96FC9 970 aa17.72■□□□□ 0.43
TRIM28-205ENST00000595028 UBAC1Q9BSL1 405 aa17.72■□□□□ 0.43
TRIM28-205ENST00000595028 KAT14Q9H8E8 782 aa17.72■□□□□ 0.43
TRIM28-205ENST00000595028 NRBP1Q9UHY1 535 aa17.72■□□□□ 0.43
TRIM28-205ENST00000595028 SEPT4O43236 478 aa17.71■□□□□ 0.43
TRIM28-205ENST00000595028 ICAM1P05362 532 aa17.71■□□□□ 0.43
TRIM28-205ENST00000595028 NEFLP07196 543 aa17.71■□□□□ 0.43
TRIM28-205ENST00000595028 GPATCH4Q5T3I0 446 aaKnown RBP17.71■□□□□ 0.43
TRIM28-205ENST00000595028 MSL3Q8N5Y2 521 aaKnown RBP17.71■□□□□ 0.43
TRIM28-205ENST00000595028 MAP4K1Q92918 833 aa17.71■□□□□ 0.43
TRIM28-205ENST00000595028 ESYT1Q9BSJ8 1104 aa17.71■□□□□ 0.43
TRIM28-205ENST00000595028 UBE2OQ9C0C9 1292 aaKnown RBP17.71■□□□□ 0.43
TRIM28-205ENST00000595028 PRDM6Q9NQX0 595 aa17.71■□□□□ 0.43
TRIM28-205ENST00000595028 CCPG1Q9ULG6 757 aa17.71■□□□□ 0.43
TRIM28-205ENST00000595028 RBM8AQ9Y5S9 174 aaKnown RBP17.71■□□□□ 0.43
TRIM28-205ENST00000595028 TAF6LQ9Y6J9 622 aa17.71■□□□□ 0.43
TRIM28-205ENST00000595028 SYNGAP1Q96PV0 1343 aa17.71■□□□□ 0.42
TRIM28-205ENST00000595028 ALAS1P13196 640 aa17.7■□□□□ 0.42
TRIM28-205ENST00000595028 TRDNQ13061 729 aa17.7■□□□□ 0.42
TRIM28-205ENST00000595028 PRAMEF19Q5SWL8 479 aa17.7■□□□□ 0.42
TRIM28-205ENST00000595028 CYB5R4Q7L1T6 521 aa17.7■□□□□ 0.42
TRIM28-205ENST00000595028 ZNF467Q7Z7K2 595 aaPredicted RBP17.7■□□□□ 0.42
TRIM28-205ENST00000595028 FGD4Q96M96 766 aa17.7■□□□□ 0.42
TRIM28-205ENST00000595028 GUCD1Q96NT3 240 aa17.7■□□□□ 0.42
TRIM28-205ENST00000595028 TRERF1Q96PN7 1200 aa17.7■□□□□ 0.42
TRIM28-205ENST00000595028 C11orf49Q9H6J7 331 aa17.7■□□□□ 0.42
TRIM28-205ENST00000595028 A1CFQ9NQ94 594 aaKnown RBP17.7■□□□□ 0.42
TRIM28-205ENST00000595028 MYH6P13533 1939 aa17.7■□□□□ 0.42
TRIM28-205ENST00000595028 GOLGA8HP0CJ92 632 aa17.69■□□□□ 0.42
TRIM28-205ENST00000595028 COL6A1P12109 1028 aa17.69■□□□□ 0.42
TRIM28-205ENST00000595028 TAL1P17542 331 aaPredicted RBP17.69■□□□□ 0.42
TRIM28-205ENST00000595028 SEC23AQ15436 765 aa17.69■□□□□ 0.42
TRIM28-205ENST00000595028 IFIT1BQ5T764 474 aaKnown RBP17.69■□□□□ 0.42
TRIM28-205ENST00000595028 MAMDC4Q6UXC1 1216 aa17.69■□□□□ 0.42
TRIM28-205ENST00000595028 KIAA1211Q6ZU35 1233 aa17.69■□□□□ 0.42
TRIM28-205ENST00000595028 STOX1Q6ZVD7 989 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms