RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 TOX2Q96NM4 488 aa28.39■■■□□ 2.14
LSM4-202ENST00000593564 STARD7Q9NQZ5 370 aa28.39■■■□□ 2.14
LSM4-202ENST00000593564 CST5P28325 142 aaPredicted RBP28.38■■■□□ 2.13
LSM4-202ENST00000593564 SLC1A4P43007 532 aa28.38■■■□□ 2.13
LSM4-202ENST00000593564 RRP1P56182 461 aaKnown RBP28.38■■■□□ 2.13
LSM4-202ENST00000593564 KCNA10Q16322 511 aa28.38■■■□□ 2.13
LSM4-202ENST00000593564 ZNF697Q5TEC3 545 aa28.38■■■□□ 2.13
LSM4-202ENST00000593564 CCDC129Q6ZRS4 1044 aa28.38■■■□□ 2.13
LSM4-202ENST00000593564 ARMCX2Q7L311 632 aa28.38■■■□□ 2.13
LSM4-202ENST00000593564 ACAD9Q9H845 621 aa28.38■■■□□ 2.13
LSM4-202ENST00000593564 HOMER2Q9NSB8 354 aa28.38■■■□□ 2.13
LSM4-202ENST00000593564 ISY1Q9ULR0 285 aaKnown RBP28.38■■■□□ 2.13
LSM4-202ENST00000593564 PLA2G6O60733 806 aa28.37■■■□□ 2.13
LSM4-202ENST00000593564 ZBTB47Q9UFB7 747 aaPredicted RBP28.37■■■□□ 2.13
LSM4-202ENST00000593564 ZNF536O15090 1300 aa28.37■■■□□ 2.13
LSM4-202ENST00000593564 CUL9Q8IWT3 2517 aa28.36■■■□□ 2.13
LSM4-202ENST00000593564 MYADML2A6NDP7 307 aa28.36■■■□□ 2.13
LSM4-202ENST00000593564 TSPY2A6NKD2 308 aa28.36■■■□□ 2.13
LSM4-202ENST00000593564 RAG1P15918 1043 aa28.36■■■□□ 2.13
LSM4-202ENST00000593564 MCCP23508 829 aa28.36■■■□□ 2.13
LSM4-202ENST00000593564 SMAD3P84022 425 aaKnown RBP28.36■■■□□ 2.13
LSM4-202ENST00000593564 CCDC144BQ3MJ40 725 aa28.36■■■□□ 2.13
LSM4-202ENST00000593564 FAM161BQ96MY7 647 aa28.36■■■□□ 2.13
LSM4-202ENST00000593564 UPF3AQ9H1J1 476 aaKnown RBP28.36■■■□□ 2.13
LSM4-202ENST00000593564 TMEM39AQ9NV64 488 aa28.36■■■□□ 2.13
LSM4-202ENST00000593564 ANAPC4Q9UJX5 808 aa28.36■■■□□ 2.13
LSM4-202ENST00000593564 STX8Q9UNK0 236 aa28.36■■■□□ 2.13
LSM4-202ENST00000593564 ADCY6O43306 1168 aa28.35■■■□□ 2.13
LSM4-202ENST00000593564 CTDSPL2Q05D32 466 aa28.35■■■□□ 2.13
LSM4-202ENST00000593564 FAAP100Q0VG06 881 aa28.35■■■□□ 2.13
LSM4-202ENST00000593564 IKQ13123 557 aaPredicted RBP28.35■■■□□ 2.13
LSM4-202ENST00000593564 TKFCQ3LXA3 575 aa28.35■■■□□ 2.13
LSM4-202ENST00000593564 ANKRD45Q5TZF3 282 aa28.35■■■□□ 2.13
LSM4-202ENST00000593564 CCDC144CPQ8IYA2 1237 aa28.35■■■□□ 2.13
LSM4-202ENST00000593564 FAM133AQ8N9E0 248 aa28.35■■■□□ 2.13
LSM4-202ENST00000593564 PCSK9Q8NBP7 692 aaKnown RBP28.35■■■□□ 2.13
LSM4-202ENST00000593564 EVI5LQ96CN4 794 aa28.35■■■□□ 2.13
LSM4-202ENST00000593564 KATNBL1Q9H079 304 aa28.35■■■□□ 2.13
LSM4-202ENST00000593564 SPC25Q9HBM1 224 aa28.35■■■□□ 2.13
LSM4-202ENST00000593564 IL17RBQ9NRM6 502 aa28.35■■■□□ 2.13
LSM4-202ENST00000593564 RNF146Q9NTX7 359 aa28.35■■■□□ 2.13
LSM4-202ENST00000593564 ELP1O95163 1332 aa28.35■■■□□ 2.13
LSM4-202ENST00000593564 DCDC2CA8MYV0 355 aa28.34■■■□□ 2.13
LSM4-202ENST00000593564 C6orf222P0C671 652 aaPredicted RBP28.34■■■□□ 2.13
LSM4-202ENST00000593564 GJA9P57773 515 aa28.34■■■□□ 2.13
LSM4-202ENST00000593564 AGBL1Q96MI9 1066 aa28.34■■■□□ 2.13
LSM4-202ENST00000593564 GLT1D1Q96MS3 346 aa28.34■■■□□ 2.13
LSM4-202ENST00000593564 A1CFQ9NQ94 594 aaKnown RBP28.34■■■□□ 2.13
LSM4-202ENST00000593564 INCENPQ9NQS7 918 aa28.34■■■□□ 2.13
LSM4-202ENST00000593564 NOVP48745 357 aa28.33■■■□□ 2.13
LSM4-202ENST00000593564 CNTN2Q02246 1040 aa28.33■■■□□ 2.13
LSM4-202ENST00000593564 VPS53Q5VIR6 699 aa28.33■■■□□ 2.13
LSM4-202ENST00000593564 RCSD1Q6JBY9 416 aa28.33■■■□□ 2.13
LSM4-202ENST00000593564 MCM3APO60318 1980 aa28.32■■■□□ 2.12
LSM4-202ENST00000593564 NMT2O60551 498 aa28.32■■■□□ 2.12
LSM4-202ENST00000593564 ASGR1P07306 291 aa28.32■■■□□ 2.12
LSM4-202ENST00000593564 EPHB4P54760 987 aa28.32■■■□□ 2.12
LSM4-202ENST00000593564 IRX5P78411 483 aaPredicted RBP28.32■■■□□ 2.12
LSM4-202ENST00000593564 ALX1Q15699 326 aa28.32■■■□□ 2.12
LSM4-202ENST00000593564 KCTD1Q719H9 257 aa28.32■■■□□ 2.12
LSM4-202ENST00000593564 CHMP4CQ96CF2 233 aa28.32■■■□□ 2.12
LSM4-202ENST00000593564 HELLSQ9NRZ9 838 aa28.32■■■□□ 2.12
LSM4-202ENST00000593564 UNC80Q8N2C7 3258 aa28.31■■■□□ 2.12
LSM4-202ENST00000593564 ORC4O43929 436 aa28.31■■■□□ 2.12
LSM4-202ENST00000593564 RANBP6O60518 1105 aaKnown RBP28.31■■■□□ 2.12
LSM4-202ENST00000593564 PDE1AP54750 535 aa28.31■■■□□ 2.12
LSM4-202ENST00000593564 FPGSQ05932 587 aa28.31■■■□□ 2.12
LSM4-202ENST00000593564 HDAC1Q13547 482 aaPredicted RBP28.31■■■□□ 2.12
LSM4-202ENST00000593564 RNPC3Q96LT9 517 aaKnown RBP28.31■■■□□ 2.12
LSM4-202ENST00000593564 TRERF1Q96PN7 1200 aa28.31■■■□□ 2.12
LSM4-202ENST00000593564 MROH7Q68CQ1 1323 aa28.31■■■□□ 2.12
LSM4-202ENST00000593564 SOWAHBA6NEL2 793 aa28.3■■■□□ 2.12
LSM4-202ENST00000593564 ASB14A6NK59 587 aa28.3■■■□□ 2.12
LSM4-202ENST00000593564 FGRP09769 529 aa28.3■■■□□ 2.12
LSM4-202ENST00000593564 ALAS1P13196 640 aa28.3■■■□□ 2.12
LSM4-202ENST00000593564 CDK7P50613 346 aa28.3■■■□□ 2.12
LSM4-202ENST00000593564 NKX3-2P78367 333 aa28.3■■■□□ 2.12
LSM4-202ENST00000593564 TICAM2Q86XR7 235 aa28.3■■■□□ 2.12
LSM4-202ENST00000593564 CRBNQ96SW2 442 aa28.3■■■□□ 2.12
LSM4-202ENST00000593564 SEMA6BQ9H3T3 888 aa28.3■■■□□ 2.12
LSM4-202ENST00000593564 TBX21Q9UL17 535 aa28.3■■■□□ 2.12
LSM4-202ENST00000593564 PRR12Q9ULL5 1215 aa28.3■■■□□ 2.12
LSM4-202ENST00000593564 GNASQ5JWF2 1037 aa28.29■■■□□ 2.12
LSM4-202ENST00000593564 CCDC174Q6PII3 467 aa28.29■■■□□ 2.12
LSM4-202ENST00000593564 RASGRP2Q7LDG7 609 aa28.29■■■□□ 2.12
LSM4-202ENST00000593564 A0A0U1RQG5 324 aaPredicted RBP28.28■■■□□ 2.12
LSM4-202ENST00000593564 CTAGE5O15320 804 aa28.28■■■□□ 2.12
LSM4-202ENST00000593564 TIMP1P01033 207 aa28.28■■■□□ 2.12
LSM4-202ENST00000593564 DCAF4Q8WV16 495 aa28.28■■■□□ 2.12
LSM4-202ENST00000593564 CDX2Q99626 313 aaPredicted RBP28.28■■■□□ 2.12
LSM4-202ENST00000593564 SNAP25P60880 206 aa28.27■■■□□ 2.12
LSM4-202ENST00000593564 TNFAIP2Q03169 654 aa28.27■■■□□ 2.12
LSM4-202ENST00000593564 VTI1AQ96AJ9 217 aa28.27■■■□□ 2.12
LSM4-202ENST00000593564 TTYH1Q9H313 450 aaPredicted RBP28.27■■■□□ 2.12
LSM4-202ENST00000593564 ASTN1O14525 1302 aa28.26■■■□□ 2.11
LSM4-202ENST00000593564 C11orf97A0A1B0GVM6 126 aaPredicted RBP28.26■■■□□ 2.11
LSM4-202ENST00000593564 ARVCFO00192 962 aa28.26■■■□□ 2.11
LSM4-202ENST00000593564 MCMDC2Q4G0Z9 681 aa28.26■■■□□ 2.11
LSM4-202ENST00000593564 MUM1L1Q5H9M0 696 aa28.26■■■□□ 2.11
LSM4-202ENST00000593564 FAM227BQ96M60 508 aa28.26■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms