RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 CCAR2Q8N163 923 aaKnown RBP22.3■■□□□ 1.16
CLIP3-206ENST00000593074 LRRC47Q8N1G4 583 aaKnown RBP22.3■■□□□ 1.16
CLIP3-206ENST00000593074 DISC1Q9NRI5 854 aa22.3■■□□□ 1.16
CLIP3-206ENST00000593074 SYNRGQ9UMZ2 1314 aa22.3■■□□□ 1.16
CLIP3-206ENST00000593074 SCN9AQ15858 1988 aa22.29■■□□□ 1.16
CLIP3-206ENST00000593074 NYAP1Q6ZVC0 841 aa22.29■■□□□ 1.16
CLIP3-206ENST00000593074 SIPA1L1O43166 1804 aa22.29■■□□□ 1.16
CLIP3-206ENST00000593074 PPP1R3GB7ZBB8 358 aa22.29■■□□□ 1.16
CLIP3-206ENST00000593074 CACNB3P54284 484 aa22.29■■□□□ 1.16
CLIP3-206ENST00000593074 SOGA3Q5TF21 947 aa22.29■■□□□ 1.16
CLIP3-206ENST00000593074 SPATA1Q5VX52 437 aa22.29■■□□□ 1.16
CLIP3-206ENST00000593074 CCDC17Q96LX7 622 aa22.29■■□□□ 1.16
CLIP3-206ENST00000593074 UBA5Q9GZZ9 404 aa22.29■■□□□ 1.16
CLIP3-206ENST00000593074 SAMSN1Q9NSI8 373 aaKnown RBP22.29■■□□□ 1.16
CLIP3-206ENST00000593074 FRMPD2Q68DX3 1309 aaPredicted RBP22.29■■□□□ 1.16
CLIP3-206ENST00000593074 NRDCO43847 1150 aa22.28■■□□□ 1.16
CLIP3-206ENST00000593074 NPM3O75607 178 aaKnown RBP22.28■■□□□ 1.16
CLIP3-206ENST00000593074 TCP10Q12799 353 aa22.28■■□□□ 1.16
CLIP3-206ENST00000593074 HSP90AA4PQ58FG1 418 aa22.28■■□□□ 1.16
CLIP3-206ENST00000593074 CLEC10AQ8IUN9 316 aa22.28■■□□□ 1.16
CLIP3-206ENST00000593074 RTKN2Q8IZC4 609 aa22.28■■□□□ 1.16
CLIP3-206ENST00000593074 SLC16A10Q8TF71 515 aa22.28■■□□□ 1.16
CLIP3-206ENST00000593074 STAMQ92783 540 aa22.28■■□□□ 1.16
CLIP3-206ENST00000593074 CCSER1Q9C0I3 900 aa22.28■■□□□ 1.16
CLIP3-206ENST00000593074 VAT1LQ9HCJ6 419 aa22.28■■□□□ 1.16
CLIP3-206ENST00000593074 CDK11BP21127 795 aaKnown RBP22.27■■□□□ 1.16
CLIP3-206ENST00000593074 STAT6P42226 847 aa22.27■■□□□ 1.16
CLIP3-206ENST00000593074 EIF6P56537 245 aaKnown RBP22.27■■□□□ 1.16
CLIP3-206ENST00000593074 ORC2Q13416 577 aaPredicted RBP22.27■■□□□ 1.16
CLIP3-206ENST00000593074 KARSQ15046 597 aaKnown RBP22.27■■□□□ 1.16
CLIP3-206ENST00000593074 CCDC93Q567U6 631 aa22.27■■□□□ 1.16
CLIP3-206ENST00000593074 PI4KBQ9UBF8 816 aa22.27■■□□□ 1.16
CLIP3-206ENST00000593074 FAM198AQ9UFP1 575 aa22.27■■□□□ 1.16
CLIP3-206ENST00000593074 MPHOSPH10O00566 681 aaKnown RBP22.27■■□□□ 1.16
CLIP3-206ENST00000593074 CDC25AP30304 524 aa22.27■■□□□ 1.16
CLIP3-206ENST00000593074 ZNF543Q08ER8 600 aa22.27■■□□□ 1.16
CLIP3-206ENST00000593074 TBX2Q13207 712 aaPredicted RBP22.27■■□□□ 1.16
CLIP3-206ENST00000593074 NAALADL2Q58DX5 795 aa22.27■■□□□ 1.16
CLIP3-206ENST00000593074 PPP4R3BQ5MIZ7 849 aa22.27■■□□□ 1.16
CLIP3-206ENST00000593074 NEK8Q86SG6 692 aa22.27■■□□□ 1.16
CLIP3-206ENST00000593074 REXO1Q8N1G1 1221 aaKnown RBP22.27■■□□□ 1.16
CLIP3-206ENST00000593074 CCDC112Q8NEF3 446 aa22.27■■□□□ 1.16
CLIP3-206ENST00000593074 BLZF1Q9H2G9 400 aa22.27■■□□□ 1.16
CLIP3-206ENST00000593074 TMX1Q9H3N1 280 aa22.27■■□□□ 1.16
CLIP3-206ENST00000593074 YDJCA8MPS7 323 aa22.26■■□□□ 1.15
CLIP3-206ENST00000593074 CDKAL1Q5VV42 579 aa22.26■■□□□ 1.15
CLIP3-206ENST00000593074 E4F1Q66K89 784 aaPredicted RBP22.26■■□□□ 1.15
CLIP3-206ENST00000593074 ZSCAN29Q8IWY8 852 aaPredicted RBP22.26■■□□□ 1.15
CLIP3-206ENST00000593074 SMYD4Q8IYR2 804 aaPredicted RBP22.26■■□□□ 1.15
CLIP3-206ENST00000593074 AK8Q96MA6 479 aa22.26■■□□□ 1.15
CLIP3-206ENST00000593074 A0A1B0GTH6 734 aa22.26■■□□□ 1.15
CLIP3-206ENST00000593074 PSDA5PKW4 1024 aaPredicted RBP22.26■■□□□ 1.15
CLIP3-206ENST00000593074 RIOK3O14730 519 aaKnown RBP22.26■■□□□ 1.15
CLIP3-206ENST00000593074 OR52Z1P0C646 297 aa22.26■■□□□ 1.15
CLIP3-206ENST00000593074 APTXQ7Z2E3 356 aaKnown RBP22.26■■□□□ 1.15
CLIP3-206ENST00000593074 DNAJC18Q9H819 358 aa22.26■■□□□ 1.15
CLIP3-206ENST00000593074 RMND1Q9NWS8 449 aa22.26■■□□□ 1.15
CLIP3-206ENST00000593074 MYH4Q9Y623 1939 aa22.25■■□□□ 1.15
CLIP3-206ENST00000593074 DDTLA6NHG4 134 aaPredicted RBP22.25■■□□□ 1.15
CLIP3-206ENST00000593074 KLHL10Q6JEL2 608 aa22.25■■□□□ 1.15
CLIP3-206ENST00000593074 PPP1R18Q6NYC8 613 aa22.25■■□□□ 1.15
CLIP3-206ENST00000593074 PAXBP1Q9Y5B6 917 aa22.25■■□□□ 1.15
CLIP3-206ENST00000593074 PP2D1A8MPX8 630 aa22.24■■□□□ 1.15
CLIP3-206ENST00000593074 CCNT1O60563 726 aaKnown RBP22.24■■□□□ 1.15
CLIP3-206ENST00000593074 MYL1P05976 194 aa22.24■■□□□ 1.15
CLIP3-206ENST00000593074 DPEP1P16444 411 aa22.24■■□□□ 1.15
CLIP3-206ENST00000593074 UBA7P41226 1012 aa22.24■■□□□ 1.15
CLIP3-206ENST00000593074 PTPN14Q15678 1187 aa22.24■■□□□ 1.15
CLIP3-206ENST00000593074 LETM2Q2VYF4 491 aa22.24■■□□□ 1.15
CLIP3-206ENST00000593074 SPECC1LQ69YQ0 1117 aa22.24■■□□□ 1.15
CLIP3-206ENST00000593074 PSMD1Q99460 953 aa22.24■■□□□ 1.15
CLIP3-206ENST00000593074 TRIM34Q9BYJ4 488 aa22.24■■□□□ 1.15
CLIP3-206ENST00000593074 RPN1P04843 607 aaKnown RBP22.24■■□□□ 1.15
CLIP3-206ENST00000593074 NR1I3Q14994 352 aa22.24■■□□□ 1.15
CLIP3-206ENST00000593074 GPATCH4Q5T3I0 446 aaKnown RBP22.24■■□□□ 1.15
CLIP3-206ENST00000593074 ZNF658Q5TYW1 1059 aaPredicted RBP22.24■■□□□ 1.15
CLIP3-206ENST00000593074 RRAGBQ5VZM2 374 aa22.24■■□□□ 1.15
CLIP3-206ENST00000593074 CEP135Q66GS9 1140 aa22.24■■□□□ 1.15
CLIP3-206ENST00000593074 TBCKQ8TEA7 893 aa22.24■■□□□ 1.15
CLIP3-206ENST00000593074 TDRD3Q9H7E2 651 aaKnown RBP22.24■■□□□ 1.15
CLIP3-206ENST00000593074 TRMT1Q9NXH9 659 aaKnown RBP22.24■■□□□ 1.15
CLIP3-206ENST00000593074 KCNA3P22001 575 aa22.23■■□□□ 1.15
CLIP3-206ENST00000593074 ADCY7P51828 1080 aa22.23■■□□□ 1.15
CLIP3-206ENST00000593074 ATP2B2Q01814 1243 aa22.23■■□□□ 1.15
CLIP3-206ENST00000593074 SH3BP5LQ7L8J4 393 aa22.23■■□□□ 1.15
CLIP3-206ENST00000593074 JMJD4Q9H9V9 463 aa22.23■■□□□ 1.15
CLIP3-206ENST00000593074 GPCPD1Q9NPB8 672 aa22.23■■□□□ 1.15
CLIP3-206ENST00000593074 CTNND2Q9UQB3 1225 aa22.23■■□□□ 1.15
CLIP3-206ENST00000593074 SLURP2P0DP57 97 aa22.22■■□□□ 1.15
CLIP3-206ENST00000593074 STX17P56962 302 aa22.22■■□□□ 1.15
CLIP3-206ENST00000593074 CERKLQ49MI3 558 aaPredicted RBP22.22■■□□□ 1.15
CLIP3-206ENST00000593074 CUEDC2Q9H467 287 aa22.22■■□□□ 1.15
CLIP3-206ENST00000593074 MAGEF1Q9HAY2 307 aa22.22■■□□□ 1.15
CLIP3-206ENST00000593074 KBTBD4Q9NVX7 518 aa22.22■■□□□ 1.15
CLIP3-206ENST00000593074 BIN2Q9UBW5 565 aaPredicted RBP22.22■■□□□ 1.15
CLIP3-206ENST00000593074 RWDD2AQ9UIY3 292 aa22.22■■□□□ 1.15
CLIP3-206ENST00000593074 PNMA6FA0A0J9YX94 578 aa22.22■■□□□ 1.15
CLIP3-206ENST00000593074 ENTPD3O75355 529 aa22.22■■□□□ 1.15
CLIP3-206ENST00000593074 SEMA3FQ13275 785 aa22.22■■□□□ 1.15
CLIP3-206ENST00000593074 ADGRF4Q8IZF3 695 aa22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms