RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 CYP21A2P08686 494 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 CYP2D6P10635 497 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 PSMA5P28066 241 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 EPHX2P34913 555 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 RBM25P49756 843 aaKnown RBP6.27□□□□□ -1.41
LIG3-210ENST00000588109 SEC13P55735 322 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 ANAPC15P60006 121 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 PPARAQ07869 468 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 TNFAIP1Q13829 316 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 EAPPQ56P03 285 aaPredicted RBP6.27□□□□□ -1.41
LIG3-210ENST00000588109 ANGEL2Q5VTE6 544 aaKnown RBP6.27□□□□□ -1.41
LIG3-210ENST00000588109 CTR9Q6PD62 1173 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 FOXR1Q6PIV2 292 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 TREML4Q6UXN2 200 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 RALYLQ86SE5 291 aaKnown RBP6.27□□□□□ -1.41
LIG3-210ENST00000588109 TTC6Q86TZ1 520 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 APOBEC3FQ8IUX4 373 aaKnown RBP6.27□□□□□ -1.41
LIG3-210ENST00000588109 CRACR2BQ8N4Y2 399 aaPredicted RBP6.27□□□□□ -1.41
LIG3-210ENST00000588109 TRPM4Q8TD43 1214 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 ZNF526Q8TF50 670 aaPredicted RBP6.27□□□□□ -1.41
LIG3-210ENST00000588109 ZBED3Q96IU2 234 aaPredicted RBP6.27□□□□□ -1.41
LIG3-210ENST00000588109 JAKMIP1Q96N16 626 aaKnown RBP6.27□□□□□ -1.41
LIG3-210ENST00000588109 IDI2Q9BXS1 227 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 OSBPL5Q9H0X9 879 aaPredicted RBP6.27□□□□□ -1.41
LIG3-210ENST00000588109 RNF41Q9H4P4 317 aaPredicted RBP6.27□□□□□ -1.41
LIG3-210ENST00000588109 TOMM22Q9NS69 142 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 PALD1Q9ULE6 856 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 DYRK1BQ9Y463 629 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 HRH3Q9Y5N1 445 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 SNX14Q9Y5W7 946 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 FOCADQ5VW36 1801 aa6.27□□□□□ -1.41
LIG3-210ENST00000588109 BAZ2AQ9UIF9 1905 aaKnown RBP6.27□□□□□ -1.41
LIG3-210ENST00000588109 LAMB1P07942 1786 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 CDK5RAP2Q96SN8 1893 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 CDC14CA4D256 554 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 FAM196BA6NMK8 535 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 E7EWF7 191 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 CASTP20810 708 aaKnown RBP6.26□□□□□ -1.41
LIG3-210ENST00000588109 ANP32AP39687 249 aaKnown RBP6.26□□□□□ -1.41
LIG3-210ENST00000588109 FGD1P98174 961 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 PDE4BQ07343 736 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 RABEP1Q15276 862 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 SBK1Q52WX2 424 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 RRP12Q5JTH9 1297 aaKnown RBP6.26□□□□□ -1.41
LIG3-210ENST00000588109 C12orf60Q5U649 245 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 FKBP1CQ5VVH2 108 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 BLOC1S2Q6QNY1 142 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 MFSD6Q6ZSS7 791 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 USP50Q70EL3 339 aaPredicted RBP6.26□□□□□ -1.41
LIG3-210ENST00000588109 FAM83AQ86UY5 434 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 PNMA8AQ86V59 439 aaPredicted RBP6.26□□□□□ -1.41
LIG3-210ENST00000588109 TNS4Q8IZW8 715 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 SIX5Q8N196 739 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 PGBD3Q8N328 593 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 NCOA7Q8NI08 942 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 DCPSQ96C86 337 aaKnown RBP6.26□□□□□ -1.41
LIG3-210ENST00000588109 NEK1Q96PY6 1258 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 KRT23Q9C075 422 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 DHX36Q9H2U1 1008 aaKnown RBP6.26□□□□□ -1.41
LIG3-210ENST00000588109 MKNK2Q9HBH9 465 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 ZNF287Q9HBT7 754 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 DDX4Q9NQI0 724 aaKnown RBP6.26□□□□□ -1.41
LIG3-210ENST00000588109 GGA3Q9NZ52 723 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 LAMA4Q16363 1823 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 MYH1P12882 1939 aa6.26□□□□□ -1.41
LIG3-210ENST00000588109 ASTN2O75129 1339 aaPredicted RBP6.25□□□□□ -1.41
LIG3-210ENST00000588109 DDX60LQ5H9U9 1706 aaKnown RBP6.25□□□□□ -1.41
LIG3-210ENST00000588109 SCN4AP35499 1836 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 A0A1B0GTH6 734 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 SFI1A8K8P3 1242 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 USP17L15C9J2P7 530 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 USP17L10C9JJH3 530 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 USP17L13C9JLJ4 530 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 USP17L11C9JVI0 530 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 USP17L18D6R9N7 530 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 USP17L22D6RA61 530 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 USP17L17D6RBQ6 530 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 USP17L19D6RCP7 530 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 USP17L20D6RJB6 530 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 H3BM21 787 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 F11P03951 625 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 HMGB1P09429 215 aaKnown RBP6.25□□□□□ -1.41
LIG3-210ENST00000588109 PCP11498 1178 aaKnown RBP6.25□□□□□ -1.41
LIG3-210ENST00000588109 PLCD1P51178 756 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 HIRAP54198 1017 aaPredicted RBP6.25□□□□□ -1.41
LIG3-210ENST00000588109 USP17L24Q0WX57 530 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 DPYDQ12882 1025 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 RASA3Q14644 834 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 C4orf17Q53FE4 359 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 AKNAD1Q5T1N1 836 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 SV2AQ7L0J3 742 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 TBC1D10CQ8IV04 446 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 ANKMY2Q8IV38 441 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 ZFPM1Q8IX07 1006 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 CCDC82Q8N4S0 544 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 FAM200AQ8TCP9 573 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 STAG1Q8WVM7 1258 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 FAM151AQ8WW52 585 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 ESR2Q92731 530 aa6.25□□□□□ -1.41
LIG3-210ENST00000588109 KCNB2Q92953 911 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms