RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 MTIF3Q9H2K0 278 aaKnown RBP13.28□□□□□ -0.28
VPS4B-202ENST00000588059 ABHD16BQ9H3Z7 469 aa13.28□□□□□ -0.28
VPS4B-202ENST00000588059 SLC28A3Q9HAS3 691 aa13.28□□□□□ -0.28
VPS4B-202ENST00000588059 SPC25Q9HBM1 224 aa13.28□□□□□ -0.28
VPS4B-202ENST00000588059 ATP2A1O14983 1001 aa13.27□□□□□ -0.29
VPS4B-202ENST00000588059 NDUFB10O96000 172 aa13.27□□□□□ -0.29
VPS4B-202ENST00000588059 CHGBP05060 677 aa13.27□□□□□ -0.29
VPS4B-202ENST00000588059 NKX3-2P78367 333 aa13.27□□□□□ -0.29
VPS4B-202ENST00000588059 ARMCX2Q7L311 632 aa13.27□□□□□ -0.29
VPS4B-202ENST00000588059 CPXCR1Q8N123 301 aa13.27□□□□□ -0.29
VPS4B-202ENST00000588059 PAG1Q9NWQ8 432 aa13.27□□□□□ -0.29
VPS4B-202ENST00000588059 UMODL1Q5DID0 1318 aa13.27□□□□□ -0.29
VPS4B-202ENST00000588059 ASTN1O14525 1302 aa13.26□□□□□ -0.29
VPS4B-202ENST00000588059 FGBP02675 491 aa13.26□□□□□ -0.29
VPS4B-202ENST00000588059 BMP1P13497 986 aa13.26□□□□□ -0.29
VPS4B-202ENST00000588059 SLC4A3P48751 1232 aa13.26□□□□□ -0.29
VPS4B-202ENST00000588059 BEX3Q00994 111 aa13.26□□□□□ -0.29
VPS4B-202ENST00000588059 HSP90AB4PQ58FF6 505 aa13.26□□□□□ -0.29
VPS4B-202ENST00000588059 CTR9Q6PD62 1173 aa13.26□□□□□ -0.29
VPS4B-202ENST00000588059 OTOP2Q7RTS6 562 aa13.26□□□□□ -0.29
VPS4B-202ENST00000588059 CLASRPQ8N2M8 674 aaKnown RBP13.26□□□□□ -0.29
VPS4B-202ENST00000588059 PRPF38AQ8NAV1 312 aaKnown RBP13.26□□□□□ -0.29
VPS4B-202ENST00000588059 SLC43A3Q8NBI5 491 aa13.26□□□□□ -0.29
VPS4B-202ENST00000588059 HIPK3Q9H422 1215 aa13.26□□□□□ -0.29
VPS4B-202ENST00000588059 PRRC2BQ5JSZ5 2229 aaKnown RBP13.25□□□□□ -0.29
VPS4B-202ENST00000588059 XIRP2A4UGR9 3374 aa13.25□□□□□ -0.29
VPS4B-202ENST00000588059 F5H6K3 240 aa13.25□□□□□ -0.29
VPS4B-202ENST00000588059 IFIT2P09913 472 aaKnown RBP13.25□□□□□ -0.29
VPS4B-202ENST00000588059 RASA1P20936 1047 aa13.25□□□□□ -0.29
VPS4B-202ENST00000588059 RABGGTBP53611 331 aa13.25□□□□□ -0.29
VPS4B-202ENST00000588059 TFF2Q03403 129 aa13.25□□□□□ -0.29
VPS4B-202ENST00000588059 KLRC3Q07444 240 aa13.25□□□□□ -0.29
VPS4B-202ENST00000588059 PPP2R2DQ66LE6 453 aa13.25□□□□□ -0.29
VPS4B-202ENST00000588059 CXCL17Q6UXB2 119 aa13.25□□□□□ -0.29
VPS4B-202ENST00000588059 CCDC144CPQ8IYA2 1237 aa13.25□□□□□ -0.29
VPS4B-202ENST00000588059 ANKRD35Q8N283 1001 aa13.25□□□□□ -0.29
VPS4B-202ENST00000588059 MICALL1Q8N3F8 863 aa13.25□□□□□ -0.29
VPS4B-202ENST00000588059 KIF1BPQ96EK5 621 aa13.25□□□□□ -0.29
VPS4B-202ENST00000588059 DDRGK1Q96HY6 314 aa13.25□□□□□ -0.29
VPS4B-202ENST00000588059 NOC4LQ9BVI4 516 aaKnown RBP13.25□□□□□ -0.29
VPS4B-202ENST00000588059 C1QTNF1Q9BXJ1 281 aa13.25□□□□□ -0.29
VPS4B-202ENST00000588059 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.25□□□□□ -0.29
VPS4B-202ENST00000588059 WNT8AQ9H1J5 351 aa13.25□□□□□ -0.29
VPS4B-202ENST00000588059 SLC38A10Q9HBR0 1119 aa13.25□□□□□ -0.29
VPS4B-202ENST00000588059 RAVER2Q9HCJ3 691 aaKnown RBP13.25□□□□□ -0.29
VPS4B-202ENST00000588059 NYAP2Q9P242 653 aa13.25□□□□□ -0.29
VPS4B-202ENST00000588059 SLC4A4Q9Y6R1 1079 aa13.25□□□□□ -0.29
VPS4B-202ENST00000588059 GRIN2DO15399 1336 aa13.24□□□□□ -0.29
VPS4B-202ENST00000588059 LCTP09848 1927 aa13.24□□□□□ -0.29
VPS4B-202ENST00000588059 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.24□□□□□ -0.29
VPS4B-202ENST00000588059 ZBED4O75132 1171 aa13.24□□□□□ -0.29
VPS4B-202ENST00000588059 MYOGP15173 224 aa13.24□□□□□ -0.29
VPS4B-202ENST00000588059 HOXD11P31277 338 aaPredicted RBP13.24□□□□□ -0.29
VPS4B-202ENST00000588059 CCL23P55773 120 aa13.24□□□□□ -0.29
VPS4B-202ENST00000588059 UBE3CQ15386 1083 aa13.24□□□□□ -0.29
VPS4B-202ENST00000588059 KIFC2Q96AC6 838 aa13.24□□□□□ -0.29
VPS4B-202ENST00000588059 VWCEQ96DN2 955 aa13.24□□□□□ -0.29
VPS4B-202ENST00000588059 TSPYL2Q9H2G4 693 aaPredicted RBP13.24□□□□□ -0.29
VPS4B-202ENST00000588059 BOLA2Q9H3K6 86 aa13.24□□□□□ -0.29
VPS4B-202ENST00000588059 ARPP21Q9UBL0 812 aaPredicted RBP13.24□□□□□ -0.29
VPS4B-202ENST00000588059 FBXO40Q9UH90 709 aa13.24□□□□□ -0.29
VPS4B-202ENST00000588059 SCN5AQ14524 2016 aa13.23□□□□□ -0.29
VPS4B-202ENST00000588059 CABYRO75952 493 aa13.23□□□□□ -0.29
VPS4B-202ENST00000588059 KCNQ1P51787 676 aa13.23□□□□□ -0.29
VPS4B-202ENST00000588059 OAZ1P54368 228 aa13.23□□□□□ -0.29
VPS4B-202ENST00000588059 CNTN2Q02246 1040 aa13.23□□□□□ -0.29
VPS4B-202ENST00000588059 TNFAIP2Q03169 654 aa13.23□□□□□ -0.29
VPS4B-202ENST00000588059 ITGA7Q13683 1181 aa13.23□□□□□ -0.29
VPS4B-202ENST00000588059 TLK2Q86UE8 772 aa13.23□□□□□ -0.29
VPS4B-202ENST00000588059 FAM133AQ8N9E0 248 aa13.23□□□□□ -0.29
VPS4B-202ENST00000588059 CHST13Q8NET6 341 aa13.23□□□□□ -0.29
VPS4B-202ENST00000588059 HAUS7Q99871 368 aa13.23□□□□□ -0.29
VPS4B-202ENST00000588059 PUS7LQ9H0K6 701 aaKnown RBP13.23□□□□□ -0.29
VPS4B-202ENST00000588059 GNEQ9Y223 722 aaKnown RBP13.23□□□□□ -0.29
VPS4B-202ENST00000588059 CTDP1Q9Y5B0 961 aaPredicted RBP13.23□□□□□ -0.29
VPS4B-202ENST00000588059 PCDHA11Q9Y5I1 949 aa13.23□□□□□ -0.29
VPS4B-202ENST00000588059 SLC4A7Q9Y6M7 1214 aa13.23□□□□□ -0.29
VPS4B-202ENST00000588059 TRANK1O15050 2925 aa13.23□□□□□ -0.29
VPS4B-202ENST00000588059 IGKV6D-41A0A0C4DH26 115 aa13.22□□□□□ -0.29
VPS4B-202ENST00000588059 ERC2O15083 957 aa13.22□□□□□ -0.29
VPS4B-202ENST00000588059 B4GALT4O60513 344 aa13.22□□□□□ -0.29
VPS4B-202ENST00000588059 ATP5JP18859 108 aa13.22□□□□□ -0.29
VPS4B-202ENST00000588059 PTGS1P23219 599 aa13.22□□□□□ -0.29
VPS4B-202ENST00000588059 FSCN1Q16658 493 aaKnown RBP13.22□□□□□ -0.29
VPS4B-202ENST00000588059 AAK1Q2M2I8 961 aa13.22□□□□□ -0.29
VPS4B-202ENST00000588059 NOL8Q76FK4 1167 aaKnown RBP13.22□□□□□ -0.29
VPS4B-202ENST00000588059 TRPV6Q9H1D0 765 aa13.22□□□□□ -0.29
VPS4B-202ENST00000588059 HOMER2Q9NSB8 354 aa13.22□□□□□ -0.29
VPS4B-202ENST00000588059 TANC1Q9C0D5 1861 aa13.21□□□□□ -0.29
VPS4B-202ENST00000588059 ATP2A2P16615 1042 aaKnown RBP13.21□□□□□ -0.29
VPS4B-202ENST00000588059 SBK1Q52WX2 424 aa13.21□□□□□ -0.29
VPS4B-202ENST00000588059 STK11IPQ8N1F8 1099 aa13.21□□□□□ -0.29
VPS4B-202ENST00000588059 PANK1Q8TE04 598 aa13.21□□□□□ -0.29
VPS4B-202ENST00000588059 SCLYQ96I15 445 aa13.21□□□□□ -0.29
VPS4B-202ENST00000588059 AGBL1Q96MI9 1066 aa13.21□□□□□ -0.29
VPS4B-202ENST00000588059 SEZ6LQ9BYH1 1024 aa13.21□□□□□ -0.29
VPS4B-202ENST00000588059 BCL11AQ9H165 835 aa13.21□□□□□ -0.29
VPS4B-202ENST00000588059 A1CFQ9NQ94 594 aaKnown RBP13.21□□□□□ -0.29
VPS4B-202ENST00000588059 CLIP2Q9UDT6 1046 aa13.21□□□□□ -0.29
VPS4B-202ENST00000588059 FEM1BQ9UK73 627 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms