RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 FPGSQ05932 587 aa14.12□□□□□ -0.15
LIG3-209ENST00000586435 PPARAQ07869 468 aa14.12□□□□□ -0.15
LIG3-209ENST00000586435 FAAP100Q0VG06 881 aa14.12□□□□□ -0.15
LIG3-209ENST00000586435 KCNA10Q16322 511 aa14.12□□□□□ -0.15
LIG3-209ENST00000586435 ZMYM1Q5SVZ6 1142 aa14.12□□□□□ -0.15
LIG3-209ENST00000586435 SLFN13Q68D06 897 aa14.12□□□□□ -0.15
LIG3-209ENST00000586435 FAM160B2Q86V87 743 aa14.12□□□□□ -0.15
LIG3-209ENST00000586435 ANKRD35Q8N283 1001 aa14.12□□□□□ -0.15
LIG3-209ENST00000586435 PCSK9Q8NBP7 692 aaKnown RBP14.12□□□□□ -0.15
LIG3-209ENST00000586435 GMCL1Q96IK5 515 aa14.12□□□□□ -0.15
LIG3-209ENST00000586435 RNPC3Q96LT9 517 aaKnown RBP14.12□□□□□ -0.15
LIG3-209ENST00000586435 GLT1D1Q96MS3 346 aa14.12□□□□□ -0.15
LIG3-209ENST00000586435 CDX2Q99626 313 aaPredicted RBP14.12□□□□□ -0.15
LIG3-209ENST00000586435 NAPBQ9H115 298 aa14.12□□□□□ -0.15
LIG3-209ENST00000586435 SEMA6BQ9H3T3 888 aa14.12□□□□□ -0.15
LIG3-209ENST00000586435 TMEM39AQ9NV64 488 aa14.12□□□□□ -0.15
LIG3-209ENST00000586435 MYADML2A6NDP7 307 aa14.11□□□□□ -0.15
LIG3-209ENST00000586435 ADCY6O43306 1168 aa14.11□□□□□ -0.15
LIG3-209ENST00000586435 PLA2G6O60733 806 aa14.11□□□□□ -0.15
LIG3-209ENST00000586435 EPHB4P54760 987 aa14.11□□□□□ -0.15
LIG3-209ENST00000586435 CCDC144BQ3MJ40 725 aa14.11□□□□□ -0.15
LIG3-209ENST00000586435 ARMCX2Q7L311 632 aa14.11□□□□□ -0.15
LIG3-209ENST00000586435 FAM133AQ8N9E0 248 aa14.11□□□□□ -0.15
LIG3-209ENST00000586435 SEC62Q99442 399 aaKnown RBP14.11□□□□□ -0.15
LIG3-209ENST00000586435 FSD1Q9BTV5 496 aa14.11□□□□□ -0.15
LIG3-209ENST00000586435 KATNBL1Q9H079 304 aa14.11□□□□□ -0.15
LIG3-209ENST00000586435 CDH23Q9H251 3354 aa14.11□□□□□ -0.15
LIG3-209ENST00000586435 TTYH1Q9H313 450 aaPredicted RBP14.11□□□□□ -0.15
LIG3-209ENST00000586435 ACAD9Q9H845 621 aa14.11□□□□□ -0.15
LIG3-209ENST00000586435 SPC25Q9HBM1 224 aa14.11□□□□□ -0.15
LIG3-209ENST00000586435 TBX21Q9UL17 535 aa14.11□□□□□ -0.15
LIG3-209ENST00000586435 TMEM232C9JQI7 657 aa14.1□□□□□ -0.15
LIG3-209ENST00000586435 C6orf222P0C671 652 aaPredicted RBP14.1□□□□□ -0.15
LIG3-209ENST00000586435 CDK7P50613 346 aa14.1□□□□□ -0.15
LIG3-209ENST00000586435 TFAP4Q01664 338 aa14.1□□□□□ -0.15
LIG3-209ENST00000586435 TKFCQ3LXA3 575 aa14.1□□□□□ -0.15
LIG3-209ENST00000586435 CHURC1Q8WUH1 139 aa14.1□□□□□ -0.15
LIG3-209ENST00000586435 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.1□□□□□ -0.15
LIG3-209ENST00000586435 ZNF536O15090 1300 aa14.1□□□□□ -0.15
LIG3-209ENST00000586435 SALL3Q9BXA9 1300 aa14.1□□□□□ -0.15
LIG3-209ENST00000586435 A0A0U1RQG5 324 aaPredicted RBP14.09□□□□□ -0.15
LIG3-209ENST00000586435 FOXP2O15409 715 aa14.09□□□□□ -0.15
LIG3-209ENST00000586435 TIMP1P01033 207 aa14.09□□□□□ -0.15
LIG3-209ENST00000586435 ASGR1P07306 291 aa14.09□□□□□ -0.15
LIG3-209ENST00000586435 MX1P20591 662 aa14.09□□□□□ -0.15
LIG3-209ENST00000586435 SLC1A4P43007 532 aa14.09□□□□□ -0.15
LIG3-209ENST00000586435 SLC4A3P48751 1232 aa14.09□□□□□ -0.15
LIG3-209ENST00000586435 CCDC144CPQ8IYA2 1237 aa14.09□□□□□ -0.15
LIG3-209ENST00000586435 STAG1Q8WVM7 1258 aa14.09□□□□□ -0.15
LIG3-209ENST00000586435 COL25A1Q9BXS0 654 aaPredicted RBP14.09□□□□□ -0.15
LIG3-209ENST00000586435 A1CFQ9NQ94 594 aaKnown RBP14.09□□□□□ -0.15
LIG3-209ENST00000586435 RNF146Q9NTX7 359 aa14.09□□□□□ -0.15
LIG3-209ENST00000586435 PCDHB15Q9Y5E8 787 aa14.09□□□□□ -0.15
LIG3-209ENST00000586435 ASB14A6NK59 587 aa14.08□□□□□ -0.16
LIG3-209ENST00000586435 ARVCFO00192 962 aa14.08□□□□□ -0.16
LIG3-209ENST00000586435 CTAGE5O15320 804 aa14.08□□□□□ -0.16
LIG3-209ENST00000586435 NOVP48745 357 aa14.08□□□□□ -0.16
LIG3-209ENST00000586435 MFSD5Q6N075 450 aa14.08□□□□□ -0.16
LIG3-209ENST00000586435 MAFAQ8NHW3 353 aaPredicted RBP14.08□□□□□ -0.16
LIG3-209ENST00000586435 OTUD7AQ8TE49 926 aaPredicted RBP14.08□□□□□ -0.16
LIG3-209ENST00000586435 HOMER2Q9NSB8 354 aa14.08□□□□□ -0.16
LIG3-209ENST00000586435 MYO9BQ13459 2157 aa14.07□□□□□ -0.16
LIG3-209ENST00000586435 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.07□□□□□ -0.16
LIG3-209ENST00000586435 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.07□□□□□ -0.16
LIG3-209ENST00000586435 TSPY2A6NKD2 308 aa14.07□□□□□ -0.16
LIG3-209ENST00000586435 IRX5P78411 483 aaPredicted RBP14.07□□□□□ -0.16
LIG3-209ENST00000586435 CNTN2Q02246 1040 aa14.07□□□□□ -0.16
LIG3-209ENST00000586435 PPIGQ13427 754 aaKnown RBP eCLIP14.07□□□□□ -0.16
LIG3-209ENST00000586435 GNASQ5JWF2 1037 aa14.07□□□□□ -0.16
LIG3-209ENST00000586435 RCSD1Q6JBY9 416 aa14.07□□□□□ -0.16
LIG3-209ENST00000586435 CCDC174Q6PII3 467 aa14.07□□□□□ -0.16
LIG3-209ENST00000586435 FAM126BQ8IXS8 530 aa14.07□□□□□ -0.16
LIG3-209ENST00000586435 MYLIPQ8WY64 445 aa14.07□□□□□ -0.16
LIG3-209ENST00000586435 AGBL1Q96MI9 1066 aa14.07□□□□□ -0.16
LIG3-209ENST00000586435 ANAPC4Q9UJX5 808 aa14.07□□□□□ -0.16
LIG3-209ENST00000586435 STX8Q9UNK0 236 aa14.07□□□□□ -0.16
LIG3-209ENST00000586435 GNEQ9Y223 722 aaKnown RBP14.07□□□□□ -0.16
LIG3-209ENST00000586435 SOWAHBA6NEL2 793 aa14.06□□□□□ -0.16
LIG3-209ENST00000586435 TLR3O15455 904 aaKnown RBP14.06□□□□□ -0.16
LIG3-209ENST00000586435 ORC4O43929 436 aa14.06□□□□□ -0.16
LIG3-209ENST00000586435 CABYRO75952 493 aa14.06□□□□□ -0.16
LIG3-209ENST00000586435 FGRP09769 529 aa14.06□□□□□ -0.16
LIG3-209ENST00000586435 FOSL2P15408 326 aa14.06□□□□□ -0.16
LIG3-209ENST00000586435 MCCP23508 829 aa14.06□□□□□ -0.16
LIG3-209ENST00000586435 DNAJB2P25686 324 aa14.06□□□□□ -0.16
LIG3-209ENST00000586435 TNFAIP2Q03169 654 aa14.06□□□□□ -0.16
LIG3-209ENST00000586435 IKQ13123 557 aaPredicted RBP14.06□□□□□ -0.16
LIG3-209ENST00000586435 RASIP1Q5U651 963 aa14.06□□□□□ -0.16
LIG3-209ENST00000586435 TRERF1Q96PN7 1200 aa14.06□□□□□ -0.16
LIG3-209ENST00000586435 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.06□□□□□ -0.16
LIG3-209ENST00000586435 SEZ6LQ9BYH1 1024 aa14.06□□□□□ -0.16
LIG3-209ENST00000586435 IL17RBQ9NRM6 502 aa14.06□□□□□ -0.16
LIG3-209ENST00000586435 ISY1Q9ULR0 285 aaKnown RBP14.06□□□□□ -0.16
LIG3-209ENST00000586435 ASTN1O14525 1302 aa14.06□□□□□ -0.16
LIG3-209ENST00000586435 EYSQ5T1H1 3165 aa14.06□□□□□ -0.16
LIG3-209ENST00000586435 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.05□□□□□ -0.16
LIG3-209ENST00000586435 CD4P01730 458 aa14.05□□□□□ -0.16
LIG3-209ENST00000586435 ALAS1P13196 640 aa14.05□□□□□ -0.16
LIG3-209ENST00000586435 ALX1Q15699 326 aa14.05□□□□□ -0.16
LIG3-209ENST00000586435 PSRC1Q6PGN9 363 aaPredicted RBP14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms