RNA–Protein interactions for RNA: ENST00000585241.5

SS18-226, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 774 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-226ENST00000585241 NPY5RQ15761 445 aa18.61■□□□□ 0.57
SS18-226ENST00000585241 IFFO2Q5TF58 517 aa18.61■□□□□ 0.57
SS18-226ENST00000585241 GPAT2Q6NUI2 795 aa18.61■□□□□ 0.57
SS18-226ENST00000585241 TYW1BQ6NUM6 668 aa18.61■□□□□ 0.57
SS18-226ENST00000585241 GADL1Q6ZQY3 521 aa18.61■□□□□ 0.57
SS18-226ENST00000585241 GPKOWQ92917 476 aaPredicted RBP eCLIP18.61■□□□□ 0.57
SS18-226ENST00000585241 SLC38A10Q9HBR0 1119 aa18.61■□□□□ 0.57
SS18-226ENST00000585241 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.61■□□□□ 0.57
SS18-226ENST00000585241 SLC45A1Q9Y2W3 748 aa18.61■□□□□ 0.57
SS18-226ENST00000585241 TESPA1A2RU30 521 aaPredicted RBP18.6■□□□□ 0.57
SS18-226ENST00000585241 F13A1P00488 732 aa18.6■□□□□ 0.57
SS18-226ENST00000585241 TRAF1Q13077 416 aa18.6■□□□□ 0.57
SS18-226ENST00000585241 OTUD7BQ6GQQ9 843 aa18.6■□□□□ 0.57
SS18-226ENST00000585241 LBX2Q6XYB7 198 aa18.6■□□□□ 0.57
SS18-226ENST00000585241 HEATR3Q7Z4Q2 680 aa18.6■□□□□ 0.57
SS18-226ENST00000585241 DAGLBQ8NCG7 672 aa18.6■□□□□ 0.57
SS18-226ENST00000585241 REPS2Q8NFH8 660 aa18.6■□□□□ 0.57
SS18-226ENST00000585241 CCDC12Q8WUD4 166 aaPredicted RBP18.6■□□□□ 0.57
SS18-226ENST00000585241 AMNQ9BXJ7 453 aa18.6■□□□□ 0.57
SS18-226ENST00000585241 PNMA2Q9UL42 364 aa18.6■□□□□ 0.57
SS18-226ENST00000585241 ZNF536O15090 1300 aa18.59■□□□□ 0.57
SS18-226ENST00000585241 SPDYE16A6NNV3 312 aaPredicted RBP18.59■□□□□ 0.57
SS18-226ENST00000585241 VWA5AO00534 786 aa18.59■□□□□ 0.57
SS18-226ENST00000585241 ZNF157P51786 506 aaPredicted RBP18.59■□□□□ 0.57
SS18-226ENST00000585241 FOSBP53539 338 aa18.59■□□□□ 0.57
SS18-226ENST00000585241 GUCY1B3Q02153 619 aa18.59■□□□□ 0.57
SS18-226ENST00000585241 KIF23Q02241 960 aaPredicted RBP18.59■□□□□ 0.57
SS18-226ENST00000585241 RESTQ13127 1097 aa18.59■□□□□ 0.57
SS18-226ENST00000585241 PABPC4Q13310 644 aaKnown RBP eCLIP18.59■□□□□ 0.57
SS18-226ENST00000585241 GALNT17Q6IS24 598 aa18.59■□□□□ 0.57
SS18-226ENST00000585241 FBXO11Q86XK2 927 aa18.59■□□□□ 0.57
SS18-226ENST00000585241 BRI3BPQ8WY22 251 aa18.59■□□□□ 0.57
SS18-226ENST00000585241 ATG4CQ96DT6 458 aa18.59■□□□□ 0.57
SS18-226ENST00000585241 ZMYND12Q9H0C1 365 aa18.59■□□□□ 0.57
SS18-226ENST00000585241 HOXC10Q9NYD6 342 aa18.59■□□□□ 0.57
SS18-226ENST00000585241 FAM155AB1AL88 458 aaPredicted RBP18.58■□□□□ 0.56
SS18-226ENST00000585241 ATP2A1O14983 1001 aa18.58■□□□□ 0.56
SS18-226ENST00000585241 CALML3P27482 149 aa18.58■□□□□ 0.56
SS18-226ENST00000585241 OAZ1P54368 228 aa18.58■□□□□ 0.56
SS18-226ENST00000585241 ANKRD23Q86SG2 305 aa18.58■□□□□ 0.56
SS18-226ENST00000585241 TEX2Q8IWB9 1127 aa18.58■□□□□ 0.56
SS18-226ENST00000585241 ZSCAN16Q9H4T2 348 aaPredicted RBP18.58■□□□□ 0.56
SS18-226ENST00000585241 KCNJ14Q9UNX9 436 aa18.58■□□□□ 0.56
SS18-226ENST00000585241 CCL15-CCL14A0A0B4J2E2 113 aa18.57■□□□□ 0.56
SS18-226ENST00000585241 ICAM1P05362 532 aa18.57■□□□□ 0.56
SS18-226ENST00000585241 U2AF2P26368 475 aaKnown RBP eCLIP18.57■□□□□ 0.561e-7■■■□□ 18
SS18-226ENST00000585241 NAPAP54920 295 aa18.57■□□□□ 0.56
SS18-226ENST00000585241 SNAP25P60880 206 aa18.57■□□□□ 0.56
SS18-226ENST00000585241 CCL15Q16663 113 aa18.57■□□□□ 0.56
SS18-226ENST00000585241 DIS3L2Q8IYB7 885 aaKnown RBP18.57■□□□□ 0.56
SS18-226ENST00000585241 CCDC102AQ96A19 550 aa18.57■□□□□ 0.56
SS18-226ENST00000585241 COA7Q96BR5 231 aa18.57■□□□□ 0.56
SS18-226ENST00000585241 FOXP1Q9H334 677 aaPredicted RBP18.57■□□□□ 0.56
SS18-226ENST00000585241 PCDHA4Q9UN74 947 aa18.57■□□□□ 0.56
SS18-226ENST00000585241 PCDHA1Q9Y5I3 950 aa18.57■□□□□ 0.56
SS18-226ENST00000585241 MANSC4A6NHS7 340 aaPredicted RBP18.56■□□□□ 0.56
SS18-226ENST00000585241 KIF28PB7ZC32 967 aa18.56■□□□□ 0.56
SS18-226ENST00000585241 M0R2N6 131 aa18.56■□□□□ 0.56
SS18-226ENST00000585241 ZBED4O75132 1171 aa18.56■□□□□ 0.56
SS18-226ENST00000585241 NLRP5P59047 1200 aa18.56■□□□□ 0.56
SS18-226ENST00000585241 SAFBQ15424 915 aaKnown RBP eCLIP18.56■□□□□ 0.56
SS18-226ENST00000585241 CLEC17AQ6ZS10 378 aa18.56■□□□□ 0.56
SS18-226ENST00000585241 MB21D1Q8N884 522 aa18.56■□□□□ 0.56
SS18-226ENST00000585241 TNFRSF25Q93038 417 aa18.56■□□□□ 0.56
SS18-226ENST00000585241 ASCC2Q9H1I8 757 aaPredicted RBP18.56■□□□□ 0.56
SS18-226ENST00000585241 CREBZFQ9NS37 354 aa18.56■□□□□ 0.56
SS18-226ENST00000585241 ABT1Q9ULW3 272 aaKnown RBP18.56■□□□□ 0.56
SS18-226ENST00000585241 ABCB11O95342 1321 aa18.55■□□□□ 0.56
SS18-226ENST00000585241 BTBD19C9JJ37 291 aa18.55■□□□□ 0.56
SS18-226ENST00000585241 OSBPP22059 807 aa18.55■□□□□ 0.56
SS18-226ENST00000585241 GNA11P29992 359 aa18.55■□□□□ 0.56
SS18-226ENST00000585241 KRT2P35908 639 aa18.55■□□□□ 0.56
SS18-226ENST00000585241 APLP1P51693 650 aa18.55■□□□□ 0.56
SS18-226ENST00000585241 IRX3P78415 501 aaPredicted RBP18.55■□□□□ 0.56
SS18-226ENST00000585241 CCDC174Q6PII3 467 aa18.55■□□□□ 0.56
SS18-226ENST00000585241 POTEEQ6S8J3 1075 aa18.55■□□□□ 0.56
SS18-226ENST00000585241 BRAPQ7Z569 592 aa18.55■□□□□ 0.56
SS18-226ENST00000585241 BLIDQ8IZY5 108 aa18.55■□□□□ 0.56
SS18-226ENST00000585241 TNPO1Q92973 898 aaKnown RBP18.55■□□□□ 0.56
SS18-226ENST00000585241 GLT8D2Q9H1C3 349 aa18.55■□□□□ 0.56
SS18-226ENST00000585241 BRMS1Q9HCU9 246 aa18.55■□□□□ 0.56
SS18-226ENST00000585241 C6orf50Q9HD87 102 aa18.55■□□□□ 0.56
SS18-226ENST00000585241 ZCCHC17Q9NP64 241 aaKnown RBP18.55■□□□□ 0.56
SS18-226ENST00000585241 RIC8AQ9NPQ8 531 aa18.55■□□□□ 0.56
SS18-226ENST00000585241 PNMA3Q9UL41 463 aa18.55■□□□□ 0.56
SS18-226ENST00000585241 ZNF214Q9UL59 606 aaPredicted RBP18.55■□□□□ 0.56
SS18-226ENST00000585241 COL11A1P12107 1806 aaPredicted RBP18.54■□□□□ 0.56
SS18-226ENST00000585241 SMCO2A6NFE2 343 aa18.54■□□□□ 0.56
SS18-226ENST00000585241 RASSF10A6NK89 507 aa18.54■□□□□ 0.56
SS18-226ENST00000585241 BTBD18B2RXH4 712 aa18.54■□□□□ 0.56
SS18-226ENST00000585241 HERVK_113P62684 666 aa18.54■□□□□ 0.56
SS18-226ENST00000585241 GHRHRQ02643 423 aa18.54■□□□□ 0.56
SS18-226ENST00000585241 MKRN3Q13064 507 aaKnown RBP18.54■□□□□ 0.56
SS18-226ENST00000585241 FERMT3Q86UX7 667 aa18.54■□□□□ 0.56
SS18-226ENST00000585241 GTF3C2Q8WUA4 911 aaPredicted RBP18.54■□□□□ 0.56
SS18-226ENST00000585241 P2RX7Q99572 595 aaKnown RBP18.54■□□□□ 0.56
SS18-226ENST00000585241 ATP6V1DQ9Y5K8 247 aa18.54■□□□□ 0.56
SS18-226ENST00000585241 SMCHD1A6NHR9 2005 aa18.53■□□□□ 0.56
SS18-226ENST00000585241 OPLAHO14841 1288 aa18.53■□□□□ 0.56
SS18-226ENST00000585241 ADCY7P51828 1080 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms