RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 AAK1Q2M2I8 961 aa15.31■□□□□ 0.04
SS18-219ENST00000581570 HSP90AB4PQ58FF6 505 aa15.31■□□□□ 0.04
SS18-219ENST00000581570 ARMCX2Q7L311 632 aa15.31■□□□□ 0.04
SS18-219ENST00000581570 ANKRD35Q8N283 1001 aa15.31■□□□□ 0.04
SS18-219ENST00000581570 PRPF38AQ8NAV1 312 aaKnown RBP15.31■□□□□ 0.04
SS18-219ENST00000581570 RHPN1Q8TCX5 695 aa15.31■□□□□ 0.04
SS18-219ENST00000581570 HIPK3Q9H422 1215 aa15.31■□□□□ 0.04
SS18-219ENST00000581570 F5H6K3 240 aa15.3■□□□□ 0.04
SS18-219ENST00000581570 ATP2A1O14983 1001 aa15.3■□□□□ 0.04
SS18-219ENST00000581570 CTAGE5O15320 804 aa15.3■□□□□ 0.04
SS18-219ENST00000581570 ADD2P35612 726 aa15.3■□□□□ 0.04
SS18-219ENST00000581570 CCL23P55773 120 aa15.3■□□□□ 0.04
SS18-219ENST00000581570 NKX3-2P78367 333 aa15.3■□□□□ 0.04
SS18-219ENST00000581570 BEX3Q00994 111 aa15.3■□□□□ 0.04
SS18-219ENST00000581570 TFF2Q03403 129 aa15.3■□□□□ 0.04
SS18-219ENST00000581570 KLRC3Q07444 240 aa15.3■□□□□ 0.04
SS18-219ENST00000581570 SKIV2LQ15477 1246 aaKnown RBP15.3■□□□□ 0.04
SS18-219ENST00000581570 UMODL1Q5DID0 1318 aa15.3■□□□□ 0.04
SS18-219ENST00000581570 PPP2R2DQ66LE6 453 aa15.3■□□□□ 0.04
SS18-219ENST00000581570 NOL8Q76FK4 1167 aaKnown RBP15.3■□□□□ 0.04
SS18-219ENST00000581570 CLASRPQ8N2M8 674 aaKnown RBP15.3■□□□□ 0.04
SS18-219ENST00000581570 SLC43A3Q8NBI5 491 aa15.3■□□□□ 0.04
SS18-219ENST00000581570 FGD4Q96M96 766 aa15.3■□□□□ 0.04
SS18-219ENST00000581570 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.3■□□□□ 0.04
SS18-219ENST00000581570 RAVER2Q9HCJ3 691 aaKnown RBP15.3■□□□□ 0.04
SS18-219ENST00000581570 SLC4A7Q9Y6M7 1214 aa15.3■□□□□ 0.04
SS18-219ENST00000581570 COL11A1P12107 1806 aaPredicted RBP15.29■□□□□ 0.04
SS18-219ENST00000581570 CABYRO75952 493 aa15.29■□□□□ 0.04
SS18-219ENST00000581570 IFIT2P09913 472 aaKnown RBP15.29■□□□□ 0.04
SS18-219ENST00000581570 MYOGP15173 224 aa15.29■□□□□ 0.04
SS18-219ENST00000581570 ITGA7Q13683 1181 aa15.29■□□□□ 0.04
SS18-219ENST00000581570 CTR9Q6PD62 1173 aa15.29■□□□□ 0.04
SS18-219ENST00000581570 CXCL17Q6UXB2 119 aa15.29■□□□□ 0.04
SS18-219ENST00000581570 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.29■□□□□ 0.04
SS18-219ENST00000581570 CCDC144CPQ8IYA2 1237 aa15.29■□□□□ 0.04
SS18-219ENST00000581570 RPUSD2Q8IZ73 545 aaKnown RBP15.29■□□□□ 0.04
SS18-219ENST00000581570 PAG1Q9NWQ8 432 aa15.29■□□□□ 0.04
SS18-219ENST00000581570 FBXO40Q9UH90 709 aa15.29■□□□□ 0.04
SS18-219ENST00000581570 PCDHA11Q9Y5I1 949 aa15.29■□□□□ 0.04
SS18-219ENST00000581570 SLC4A4Q9Y6R1 1079 aa15.29■□□□□ 0.04
SS18-219ENST00000581570 PARP14Q460N5 1801 aa15.29■□□□□ 0.04
SS18-219ENST00000581570 NDUFB10O96000 172 aa15.28■□□□□ 0.04
SS18-219ENST00000581570 RLBP1P12271 317 aa15.28■□□□□ 0.04
SS18-219ENST00000581570 KCNQ1P51787 676 aa15.28■□□□□ 0.04
SS18-219ENST00000581570 TNFAIP2Q03169 654 aa15.28■□□□□ 0.04
SS18-219ENST00000581570 CHST13Q8NET6 341 aa15.28■□□□□ 0.04
SS18-219ENST00000581570 KIFC2Q96AC6 838 aa15.28■□□□□ 0.04
SS18-219ENST00000581570 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.28■□□□□ 0.04
SS18-219ENST00000581570 KATNBL1Q9H079 304 aa15.28■□□□□ 0.04
SS18-219ENST00000581570 BCL11AQ9H165 835 aa15.28■□□□□ 0.04
SS18-219ENST00000581570 BOLA2Q9H3K6 86 aa15.28■□□□□ 0.04
SS18-219ENST00000581570 NYAP2Q9P242 653 aa15.28■□□□□ 0.04
SS18-219ENST00000581570 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.27■□□□□ 0.04
SS18-219ENST00000581570 ZBBXA8MT70 800 aa15.27■□□□□ 0.04
SS18-219ENST00000581570 ERC2O15083 957 aa15.27■□□□□ 0.04
SS18-219ENST00000581570 KIF1BPQ96EK5 621 aa15.27■□□□□ 0.04
SS18-219ENST00000581570 LRFN3Q9BTN0 628 aa15.27■□□□□ 0.04
SS18-219ENST00000581570 NOC4LQ9BVI4 516 aaKnown RBP15.27■□□□□ 0.04
SS18-219ENST00000581570 SEZ6LQ9BYH1 1024 aa15.27■□□□□ 0.04
SS18-219ENST00000581570 TRPV6Q9H1D0 765 aa15.27■□□□□ 0.04
SS18-219ENST00000581570 MKNK2Q9HBH9 465 aa15.27■□□□□ 0.04
SS18-219ENST00000581570 SLC38A10Q9HBR0 1119 aa15.27■□□□□ 0.04
SS18-219ENST00000581570 CLIP2Q9UDT6 1046 aa15.27■□□□□ 0.04
SS18-219ENST00000581570 ARIH1Q9Y4X5 557 aaPredicted RBP15.27■□□□□ 0.04
SS18-219ENST00000581570 ASTN1O14525 1302 aa15.26■□□□□ 0.03
SS18-219ENST00000581570 GRIN2DO15399 1336 aa15.26■□□□□ 0.03
SS18-219ENST00000581570 ZBED9Q6R2W3 1325 aa15.26■□□□□ 0.03
SS18-219ENST00000581570 RFXAPO00287 272 aa15.26■□□□□ 0.03
SS18-219ENST00000581570 DYNC1LI2O43237 492 aaPredicted RBP15.26■□□□□ 0.03
SS18-219ENST00000581570 GTPBP6O43824 516 aaPredicted RBP15.26■□□□□ 0.03
SS18-219ENST00000581570 ZEB2O60315 1214 aa15.26■□□□□ 0.03
SS18-219ENST00000581570 B4GALT4O60513 344 aa15.26■□□□□ 0.03
SS18-219ENST00000581570 CHGBP05060 677 aa15.26■□□□□ 0.03
SS18-219ENST00000581570 ATP2A2P16615 1042 aaKnown RBP15.26■□□□□ 0.03
SS18-219ENST00000581570 CNTN2Q02246 1040 aa15.26■□□□□ 0.03
SS18-219ENST00000581570 UBE3CQ15386 1083 aa15.26■□□□□ 0.03
SS18-219ENST00000581570 FSCN1Q16658 493 aaKnown RBP15.26■□□□□ 0.03
SS18-219ENST00000581570 STK11IPQ8N1F8 1099 aa15.26■□□□□ 0.03
SS18-219ENST00000581570 AP5M1Q9H0R1 490 aa15.26■□□□□ 0.03
SS18-219ENST00000581570 WNT8AQ9H1J5 351 aa15.26■□□□□ 0.03
SS18-219ENST00000581570 EPHX3Q9H6B9 360 aa15.26■□□□□ 0.03
SS18-219ENST00000581570 FEM1BQ9UK73 627 aa15.26■□□□□ 0.03
SS18-219ENST00000581570 GNEQ9Y223 722 aaKnown RBP15.26■□□□□ 0.03
SS18-219ENST00000581570 HCN4Q9Y3Q4 1203 aa15.26■□□□□ 0.03
SS18-219ENST00000581570 MYO9BQ13459 2157 aa15.25■□□□□ 0.03
SS18-219ENST00000581570 CHD9Q3L8U1 2897 aa15.25■□□□□ 0.03
SS18-219ENST00000581570 POU3F3P20264 500 aaPredicted RBP15.25■□□□□ 0.03
SS18-219ENST00000581570 RASA1P20936 1047 aa15.25■□□□□ 0.03
SS18-219ENST00000581570 OAZ1P54368 228 aa15.25■□□□□ 0.03
SS18-219ENST00000581570 TLK2Q86UE8 772 aa15.25■□□□□ 0.03
SS18-219ENST00000581570 SCLYQ96I15 445 aa15.25■□□□□ 0.03
SS18-219ENST00000581570 HOMER2Q9NSB8 354 aa15.25■□□□□ 0.03
SS18-219ENST00000581570 ARPP21Q9UBL0 812 aaPredicted RBP15.25■□□□□ 0.03
SS18-219ENST00000581570 MTCH2Q9Y6C9 303 aa15.25■□□□□ 0.03
SS18-219ENST00000581570 ASB14A6NK59 587 aa15.24■□□□□ 0.03
SS18-219ENST00000581570 TMEM67Q5HYA8 995 aa15.24■□□□□ 0.03
SS18-219ENST00000581570 FAM133AQ8N9E0 248 aa15.24■□□□□ 0.03
SS18-219ENST00000581570 VWCEQ96DN2 955 aa15.24■□□□□ 0.03
SS18-219ENST00000581570 AGBL1Q96MI9 1066 aa15.24■□□□□ 0.03
SS18-219ENST00000581570 PUS7LQ9H0K6 701 aaKnown RBP15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms