RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 CNGA1P29973 690 aa17.42■□□□□ 0.38
SS18-212ENST00000579061 SLC4A3P48751 1232 aa17.42■□□□□ 0.38
SS18-212ENST00000579061 TRDNQ13061 729 aa17.42■□□□□ 0.38
SS18-212ENST00000579061 SYDE2Q5VT97 1194 aa17.42■□□□□ 0.38
SS18-212ENST00000579061 ENAHQ8N8S7 591 aaPredicted RBP17.42■□□□□ 0.38
SS18-212ENST00000579061 PNMA1Q8ND90 353 aa17.42■□□□□ 0.38
SS18-212ENST00000579061 CHMP4CQ96CF2 233 aa17.42■□□□□ 0.38
SS18-212ENST00000579061 CCDC136Q96JN2 1154 aa17.42■□□□□ 0.38
SS18-212ENST00000579061 RANBP17Q9H2T7 1088 aaKnown RBP17.42■□□□□ 0.38
SS18-212ENST00000579061 PNMA2Q9UL42 364 aa17.42■□□□□ 0.38
SS18-212ENST00000579061 CEP290O15078 2479 aa17.42■□□□□ 0.38
SS18-212ENST00000579061 ALPK3Q96L96 1907 aa17.41■□□□□ 0.38
SS18-212ENST00000579061 ICAM1P05362 532 aa17.41■□□□□ 0.38
SS18-212ENST00000579061 TTBK2Q6IQ55 1244 aa17.41■□□□□ 0.38
SS18-212ENST00000579061 MAMDC4Q6UXC1 1216 aa17.41■□□□□ 0.38
SS18-212ENST00000579061 ANKRD35Q8N283 1001 aa17.41■□□□□ 0.38
SS18-212ENST00000579061 DIS3LQ8TF46 1054 aaKnown RBP17.41■□□□□ 0.38
SS18-212ENST00000579061 DPF3Q92784 378 aa17.41■□□□□ 0.38
SS18-212ENST00000579061 AGBL1Q96MI9 1066 aa17.41■□□□□ 0.38
SS18-212ENST00000579061 UBAC1Q9BSL1 405 aa17.41■□□□□ 0.38
SS18-212ENST00000579061 KAT14Q9H8E8 782 aa17.41■□□□□ 0.38
SS18-212ENST00000579061 GPCPD1Q9NPB8 672 aa17.41■□□□□ 0.38
SS18-212ENST00000579061 RNF146Q9NTX7 359 aa17.41■□□□□ 0.38
SS18-212ENST00000579061 TNKSO95271 1327 aa17.41■□□□□ 0.38
SS18-212ENST00000579061 SYNGAP1Q96PV0 1343 aa17.41■□□□□ 0.38
SS18-212ENST00000579061 SLC16A2P36021 539 aa17.4■□□□□ 0.38
SS18-212ENST00000579061 KIAA1211Q6ZU35 1233 aa17.4■□□□□ 0.38
SS18-212ENST00000579061 TRERF1Q96PN7 1200 aa17.4■□□□□ 0.38
SS18-212ENST00000579061 C11orf49Q9H6J7 331 aa17.4■□□□□ 0.38
SS18-212ENST00000579061 MCM3APO60318 1980 aa17.4■□□□□ 0.38
SS18-212ENST00000579061 PFASO15067 1338 aa17.4■□□□□ 0.38
SS18-212ENST00000579061 FRMPD2Q68DX3 1309 aaPredicted RBP17.4■□□□□ 0.38
SS18-212ENST00000579061 NEFLP07196 543 aa17.39■□□□□ 0.37
SS18-212ENST00000579061 COL6A1P12109 1028 aa17.39■□□□□ 0.37
SS18-212ENST00000579061 ALAS1P13196 640 aa17.39■□□□□ 0.37
SS18-212ENST00000579061 SEC23AQ15436 765 aa17.39■□□□□ 0.37
SS18-212ENST00000579061 ASPRV1Q53RT3 343 aa17.39■□□□□ 0.37
SS18-212ENST00000579061 PRAMEF19Q5SWL8 479 aa17.39■□□□□ 0.37
SS18-212ENST00000579061 CCDC174Q6PII3 467 aa17.39■□□□□ 0.37
SS18-212ENST00000579061 ESYT1Q9BSJ8 1104 aa17.39■□□□□ 0.37
SS18-212ENST00000579061 A1CFQ9NQ94 594 aaKnown RBP17.39■□□□□ 0.37
SS18-212ENST00000579061 HOMER2Q9NSB8 354 aa17.39■□□□□ 0.37
SS18-212ENST00000579061 CCPG1Q9ULG6 757 aa17.39■□□□□ 0.37
SS18-212ENST00000579061 RBM8AQ9Y5S9 174 aaKnown RBP17.39■□□□□ 0.37
SS18-212ENST00000579061 NR2E3Q9Y5X4 410 aa17.39■□□□□ 0.37
SS18-212ENST00000579061 E7EWF7 191 aa17.38■□□□□ 0.37
SS18-212ENST00000579061 SNAP25P60880 206 aa17.38■□□□□ 0.37
SS18-212ENST00000579061 IFIT1BQ5T764 474 aaKnown RBP17.38■□□□□ 0.37
SS18-212ENST00000579061 CYB5R4Q7L1T6 521 aa17.38■□□□□ 0.37
SS18-212ENST00000579061 RALYLQ86SE5 291 aaKnown RBP17.38■□□□□ 0.37
SS18-212ENST00000579061 FAM133AQ8N9E0 248 aa17.38■□□□□ 0.37
SS18-212ENST00000579061 ARRDC4Q8NCT1 418 aa17.38■□□□□ 0.37
SS18-212ENST00000579061 NCOA7Q8NI08 942 aa17.38■□□□□ 0.37
SS18-212ENST00000579061 CNPY2Q9Y2B0 182 aa17.38■□□□□ 0.37
SS18-212ENST00000579061 WDR19Q8NEZ3 1342 aa17.38■□□□□ 0.37
SS18-212ENST00000579061 MYH6P13533 1939 aa17.37■□□□□ 0.37
SS18-212ENST00000579061 POTEB2H3BUK9 544 aa17.37■□□□□ 0.37
SS18-212ENST00000579061 DNM1LO00429 736 aa17.37■□□□□ 0.37
SS18-212ENST00000579061 SNAI1O95863 264 aaPredicted RBP17.37■□□□□ 0.37
SS18-212ENST00000579061 ZNF865P0CJ78 1059 aaPredicted RBP17.37■□□□□ 0.37
SS18-212ENST00000579061 FGD4Q96M96 766 aa17.37■□□□□ 0.37
SS18-212ENST00000579061 LSG1Q9H089 658 aaKnown RBP17.37■□□□□ 0.37
SS18-212ENST00000579061 EVI5O60447 810 aa17.36■□□□□ 0.37
SS18-212ENST00000579061 PARP1P09874 1014 aaKnown RBP17.36■□□□□ 0.37
SS18-212ENST00000579061 AKR1A1P14550 325 aa17.36■□□□□ 0.37
SS18-212ENST00000579061 MUM1L1Q5H9M0 696 aa17.36■□□□□ 0.37
SS18-212ENST00000579061 SKAP1Q86WV1 359 aa17.36■□□□□ 0.37
SS18-212ENST00000579061 MAF1Q9H063 256 aa17.36■□□□□ 0.37
SS18-212ENST00000579061 LCTP09848 1927 aa17.35■□□□□ 0.37
SS18-212ENST00000579061 ERICH2A1L162 156 aa17.35■□□□□ 0.37
SS18-212ENST00000579061 H0YGN5 161 aa17.35■□□□□ 0.37
SS18-212ENST00000579061 GOLGA8HP0CJ92 632 aa17.35■□□□□ 0.37
SS18-212ENST00000579061 TAL1P17542 331 aaPredicted RBP17.35■□□□□ 0.37
SS18-212ENST00000579061 SART3Q15020 963 aaKnown RBP17.35■□□□□ 0.37
SS18-212ENST00000579061 STOX1Q6ZVD7 989 aa17.35■□□□□ 0.37
SS18-212ENST00000579061 MTA3Q9BTC8 594 aa17.35■□□□□ 0.37
SS18-212ENST00000579061 ABHD16BQ9H3Z7 469 aa17.35■□□□□ 0.37
SS18-212ENST00000579061 CYP39A1Q9NYL5 469 aa17.35■□□□□ 0.37
SS18-212ENST00000579061 LOC102724159A0A0B4J2E5 919 aa17.34■□□□□ 0.37
SS18-212ENST00000579061 ASB14A6NK59 587 aa17.34■□□□□ 0.37
SS18-212ENST00000579061 IFIT3O14879 490 aaKnown RBP17.34■□□□□ 0.37
SS18-212ENST00000579061 RARBP10826 455 aa17.34■□□□□ 0.37
SS18-212ENST00000579061 CNTN2Q02246 1040 aa17.34■□□□□ 0.37
SS18-212ENST00000579061 PWP2Q15269 919 aaKnown RBP17.34■□□□□ 0.37
SS18-212ENST00000579061 CASC1Q6TDU7 716 aa17.34■□□□□ 0.37
SS18-212ENST00000579061 ARMCX2Q7L311 632 aa17.34■□□□□ 0.37
SS18-212ENST00000579061 MB21D2Q8IYB1 491 aaPredicted RBP17.34■□□□□ 0.37
SS18-212ENST00000579061 UBA5Q9GZZ9 404 aa17.34■□□□□ 0.37
SS18-212ENST00000579061 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.34■□□□□ 0.37
SS18-212ENST00000579061 FAM184BQ9ULE4 1060 aa17.34■□□□□ 0.37
SS18-212ENST00000579061 TAF6LQ9Y6J9 622 aa17.34■□□□□ 0.37
SS18-212ENST00000579061 SOWAHBA6NEL2 793 aa17.33■□□□□ 0.36
SS18-212ENST00000579061 KBTBD13C9JR72 458 aa17.33■□□□□ 0.36
SS18-212ENST00000579061 CDC45O75419 566 aa17.33■□□□□ 0.36
SS18-212ENST00000579061 ACVR2BQ13705 512 aa17.33■□□□□ 0.36
SS18-212ENST00000579061 WTAPQ15007 396 aa17.33■□□□□ 0.36
SS18-212ENST00000579061 NECTIN1Q15223 517 aa17.33■□□□□ 0.36
SS18-212ENST00000579061 ERICH6BQ5W0A0 696 aa17.33■□□□□ 0.36
SS18-212ENST00000579061 ANO1Q5XXA6 986 aa17.33■□□□□ 0.36
SS18-212ENST00000579061 NSMFQ6X4W1 530 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms