RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.38□□□□□ -0.597e-6■■■■□ 21
VPS53-220ENST00000576149 V9GYY5 206 aaPredicted RBP11.38□□□□□ -0.59
VPS53-220ENST00000576149 ITIH6Q6UXX5 1313 aa11.38□□□□□ -0.59
VPS53-220ENST00000576149 PP2D1A8MPX8 630 aa11.38□□□□□ -0.59
VPS53-220ENST00000576149 UBA7P41226 1012 aa11.38□□□□□ -0.59
VPS53-220ENST00000576149 NAPAP54920 295 aa11.38□□□□□ -0.59
VPS53-220ENST00000576149 KRT25Q7Z3Z0 450 aa11.38□□□□□ -0.59
VPS53-220ENST00000576149 TMC4Q7Z404 712 aa11.38□□□□□ -0.59
VPS53-220ENST00000576149 PPFIBP1Q86W92 1011 aa11.38□□□□□ -0.59
VPS53-220ENST00000576149 KCTD17Q8N5Z5 321 aa11.38□□□□□ -0.59
VPS53-220ENST00000576149 RRP36Q96EU6 259 aaKnown RBP11.38□□□□□ -0.59
VPS53-220ENST00000576149 FEZ1Q99689 392 aa11.38□□□□□ -0.59
VPS53-220ENST00000576149 PLCD4Q9BRC7 762 aa11.38□□□□□ -0.59
VPS53-220ENST00000576149 DAGLAQ9Y4D2 1042 aa11.38□□□□□ -0.59
VPS53-220ENST00000576149 SMCO2A6NFE2 343 aa11.37□□□□□ -0.59
VPS53-220ENST00000576149 MYL1P05976 194 aa11.37□□□□□ -0.59
VPS53-220ENST00000576149 GNA11P29992 359 aa11.37□□□□□ -0.59
VPS53-220ENST00000576149 SPAG1Q07617 926 aa11.37□□□□□ -0.59
VPS53-220ENST00000576149 KRT31Q15323 416 aa11.37□□□□□ -0.59
VPS53-220ENST00000576149 ELF2Q15723 593 aa11.37□□□□□ -0.59
VPS53-220ENST00000576149 SP8Q8IXZ3 490 aa11.37□□□□□ -0.59
VPS53-220ENST00000576149 ZNF397Q8NF99 534 aaPredicted RBP11.37□□□□□ -0.59
VPS53-220ENST00000576149 NELFBQ8WX92 580 aa11.37□□□□□ -0.59
VPS53-220ENST00000576149 NAA15Q9BXJ9 866 aaKnown RBP11.37□□□□□ -0.59
VPS53-220ENST00000576149 C6orf50Q9HD87 102 aa11.37□□□□□ -0.59
VPS53-220ENST00000576149 LTBP1Q14766 1721 aa11.37□□□□□ -0.59
VPS53-220ENST00000576149 PLIN4Q96Q06 1357 aa11.37□□□□□ -0.59
VPS53-220ENST00000576149 COBLO75128 1261 aa11.37□□□□□ -0.59
VPS53-220ENST00000576149 PRCPP42785 496 aa11.37□□□□□ -0.59
VPS53-220ENST00000576149 GTF2IP78347 998 aa11.37□□□□□ -0.59
VPS53-220ENST00000576149 SEMA3FQ13275 785 aa11.37□□□□□ -0.59
VPS53-220ENST00000576149 KCNB1Q14721 858 aa11.37□□□□□ -0.59
VPS53-220ENST00000576149 NONOQ15233 471 aaKnown RBP eCLIP11.37□□□□□ -0.59
VPS53-220ENST00000576149 AK8Q96MA6 479 aa11.37□□□□□ -0.59
VPS53-220ENST00000576149 KBTBD4Q9NVX7 518 aa11.37□□□□□ -0.59
VPS53-220ENST00000576149 SEC63Q9UGP8 760 aaKnown RBP11.37□□□□□ -0.59
VPS53-220ENST00000576149 GDAQ9Y2T3 454 aa11.37□□□□□ -0.59
VPS53-220ENST00000576149 PPEF1O14829 653 aaPredicted RBP11.36□□□□□ -0.59
VPS53-220ENST00000576149 MFAP3LO75121 409 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 GABPAQ06546 454 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 ADSSL1Q8N142 457 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 RASSF8Q8NHQ8 419 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 PIGSQ96S52 555 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 RIOX1Q9H6W3 641 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 SUGT1Q9Y2Z0 365 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 LRRC37AA6NMS7 1700 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 ESYT2A0FGR8 921 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 SOWAHDA6NJG2 315 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 USP17L5A8MUK1 530 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 N4BP3O15049 544 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 KLRC4O43908 158 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 CCNT1O60563 726 aaKnown RBP11.36□□□□□ -0.59
VPS53-220ENST00000576149 OR52Z1P0C646 297 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 CCT6AP40227 531 aaKnown RBP11.36□□□□□ -0.59
VPS53-220ENST00000576149 COPB1P53618 953 aaKnown RBP11.36□□□□□ -0.59
VPS53-220ENST00000576149 LETM2Q2VYF4 491 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 KMT5BQ4FZB7 885 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 TCP11X2Q5H9J9 407 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 CNGA4Q8IV77 575 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 LRRN4CLQ8ND94 238 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 CPLX3Q8WVH0 158 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 CCDC51Q96ER9 411 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 SRRTQ9BXP5 876 aaKnown RBP11.36□□□□□ -0.59
VPS53-220ENST00000576149 COA1Q9GZY4 146 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 CUEDC2Q9H467 287 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 MTMR4Q9NYA4 1195 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 ATP6V0A2Q9Y487 856 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 PARP3Q9Y6F1 533 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 MYH1P12882 1939 aa11.36□□□□□ -0.59
VPS53-220ENST00000576149 KCNJ18B7U540 433 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 H7C1D1 291 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 GYPCP04921 128 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 PDHBP11177 359 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 FECHP22830 423 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 CASP14P31944 242 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 CBX1P83916 185 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 KCNJ12Q14500 433 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 MTF1Q14872 753 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 ERCC6LQ2NKX8 1250 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 SOGA3Q5TF21 947 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 NEK8Q86SG6 692 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 ANKRD20A12PQ8NF67 263 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 LRRC15Q8TF66 581 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 DESI2Q9BSY9 194 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 MAGEF1Q9HAY2 307 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 VAT1LQ9HCJ6 419 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 MAPK8IP1Q9UQF2 711 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 SPDYE4A6NLX3 237 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 hCG_1984214I3L0E3 225 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 RIMBP2O15034 1052 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 URI1O94763 535 aaPredicted RBP11.35□□□□□ -0.59
VPS53-220ENST00000576149 RHOBTB3O94955 611 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 CCDC175P0C221 793 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 FXR1P51114 621 aaKnown RBP eCLIP11.35□□□□□ -0.59
VPS53-220ENST00000576149 GNG11P61952 73 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 ORC2Q13416 577 aaPredicted RBP11.35□□□□□ -0.59
VPS53-220ENST00000576149 RAD9BQ6WBX8 426 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 CABP7Q86V35 215 aa11.35□□□□□ -0.59
VPS53-220ENST00000576149 ZNF713Q8N859 430 aaPredicted RBP11.35□□□□□ -0.59
VPS53-220ENST00000576149 GIMAP8Q8ND71 665 aaPredicted RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms