RNA–Protein interactions for RNA: ENST00000575431.1

CCDC40-214, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-214ENST00000575431 TNS4Q8IZW8 715 aa11.13□□□□□ -0.63
CCDC40-214ENST00000575431 FANCBQ8NB91 859 aa11.13□□□□□ -0.63
CCDC40-214ENST00000575431 CHMP4CQ96CF2 233 aa11.13□□□□□ -0.63
CCDC40-214ENST00000575431 ALDH8A1Q9H2A2 487 aaPredicted RBP11.13□□□□□ -0.63
CCDC40-214ENST00000575431 SENP2Q9HC62 589 aa11.13□□□□□ -0.63
CCDC40-214ENST00000575431 RBM28Q9NW13 759 aaKnown RBP11.13□□□□□ -0.63
CCDC40-214ENST00000575431 MAD2L2Q9UI95 211 aa11.13□□□□□ -0.63
CCDC40-214ENST00000575431 GJD2Q9UKL4 321 aa11.13□□□□□ -0.63
CCDC40-214ENST00000575431 CEP350Q5VT06 3117 aa11.13□□□□□ -0.63
CCDC40-214ENST00000575431 ZBTB43O43298 467 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 PEX10O60683 326 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 SEC24BO95487 1268 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 HOXC6P09630 235 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 EVCP57679 992 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 PRKCZQ05513 592 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 MAP2K5Q13163 448 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 GRB14Q14449 540 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 ANKRD1Q15327 319 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 MORN1Q5T089 497 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 APOA5Q6Q788 366 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.12□□□□□ -0.63
CCDC40-214ENST00000575431 RASGRP2Q7LDG7 609 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 ADGRF4Q8IZF3 695 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 STAG2Q8N3U4 1231 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 SLAIN1Q8ND83 568 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 TCEANC2Q96MN5 208 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 LRRC2Q9BYS8 371 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 UBA5Q9GZZ9 404 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 RIOX1Q9H6W3 641 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 RAVER2Q9HCJ3 691 aaKnown RBP11.12□□□□□ -0.63
CCDC40-214ENST00000575431 GPHNQ9NQX3 736 aaPredicted RBP11.12□□□□□ -0.63
CCDC40-214ENST00000575431 CCPG1Q9ULG6 757 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 ZNF236Q9UL36 1845 aa11.12□□□□□ -0.63
CCDC40-214ENST00000575431 ZNF536O15090 1300 aa11.11□□□□□ -0.63
CCDC40-214ENST00000575431 KLF18A0A0U1RQI7 1052 aa11.11□□□□□ -0.63
CCDC40-214ENST00000575431 ECM2O94769 699 aaPredicted RBP11.11□□□□□ -0.63
CCDC40-214ENST00000575431 RBM25P49756 843 aaKnown RBP11.11□□□□□ -0.63
CCDC40-214ENST00000575431 CAP1Q01518 475 aa11.11□□□□□ -0.63
CCDC40-214ENST00000575431 CDC37Q16543 378 aaPredicted RBP11.11□□□□□ -0.63
CCDC40-214ENST00000575431 CCDC174Q6PII3 467 aa11.11□□□□□ -0.63
CCDC40-214ENST00000575431 DPP9Q86TI2 863 aa11.11□□□□□ -0.63
CCDC40-214ENST00000575431 MICU3Q86XE3 530 aa11.11□□□□□ -0.63
CCDC40-214ENST00000575431 USP6NLQ92738 828 aa11.11□□□□□ -0.63
CCDC40-214ENST00000575431 BRF1Q92994 677 aa11.11□□□□□ -0.63
CCDC40-214ENST00000575431 DDX11Q96FC9 970 aa11.11□□□□□ -0.63
CCDC40-214ENST00000575431 MMP19Q99542 508 aa11.11□□□□□ -0.63
CCDC40-214ENST00000575431 APBA2Q99767 749 aa11.11□□□□□ -0.63
CCDC40-214ENST00000575431 SPZ1Q9BXG8 430 aa11.11□□□□□ -0.63
CCDC40-214ENST00000575431 AMNQ9BXJ7 453 aa11.11□□□□□ -0.63
CCDC40-214ENST00000575431 C22orf23Q9BZE7 217 aa11.11□□□□□ -0.63
CCDC40-214ENST00000575431 ACAD9Q9H845 621 aa11.11□□□□□ -0.63
CCDC40-214ENST00000575431 JMJD4Q9H9V9 463 aa11.11□□□□□ -0.63
CCDC40-214ENST00000575431 PDRG1Q9NUG6 133 aa11.11□□□□□ -0.63
CCDC40-214ENST00000575431 GABRQQ9UN88 632 aa11.11□□□□□ -0.63
CCDC40-214ENST00000575431 DIS3Q9Y2L1 958 aaKnown RBP11.11□□□□□ -0.63
CCDC40-214ENST00000575431 PTCH2Q9Y6C5 1203 aa11.11□□□□□ -0.63
CCDC40-214ENST00000575431 ZSWIM8A7E2V4 1837 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 PLXNB2O15031 1838 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 ZBTB5O15062 677 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 ADCY3O60266 1144 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 ALAS1P13196 640 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 CPA1P15085 419 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 GRK4P32298 578 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 SLC4A3P48751 1232 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 UBXN2AP68543 259 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 COL9A3Q14050 684 aaPredicted RBP11.1□□□□□ -0.63
CCDC40-214ENST00000575431 RTN1Q16799 776 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 SLC9C1Q4G0N8 1177 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 ANKRD35Q8N283 1001 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 MTMR8Q96EF0 704 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 AGBL1Q96MI9 1066 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 TRERF1Q96PN7 1200 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 MYL10Q9BUA6 226 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 UPF3BQ9BZI7 483 aaKnown RBP11.1□□□□□ -0.63
CCDC40-214ENST00000575431 VAT1LQ9HCJ6 419 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 RNF146Q9NTX7 359 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 BRPF3Q9ULD4 1205 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 HPS5Q9UPZ3 1129 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 RIPK3Q9Y572 518 aa11.1□□□□□ -0.63
CCDC40-214ENST00000575431 PFASO15067 1338 aa11.09□□□□□ -0.63
CCDC40-214ENST00000575431 ABCB11O95342 1321 aa11.09□□□□□ -0.63
CCDC40-214ENST00000575431 NID2Q14112 1375 aa11.09□□□□□ -0.63
CCDC40-214ENST00000575431 PNMA6FA0A0J9YX94 578 aa11.09□□□□□ -0.63
CCDC40-214ENST00000575431 GOLGA8AA7E2F4 631 aa11.09□□□□□ -0.63
CCDC40-214ENST00000575431 GOLGA8BA8MQT2 603 aa11.09□□□□□ -0.63
CCDC40-214ENST00000575431 CAPN2P17655 700 aa11.09□□□□□ -0.63
CCDC40-214ENST00000575431 CYP2B6P20813 491 aa11.09□□□□□ -0.63
CCDC40-214ENST00000575431 ADORA2AP29274 412 aa11.09□□□□□ -0.63
CCDC40-214ENST00000575431 QRICH1Q2TAL8 776 aa11.09□□□□□ -0.63
CCDC40-214ENST00000575431 FBXO11Q86XK2 927 aa11.09□□□□□ -0.63
CCDC40-214ENST00000575431 MCF2L2Q86YR7 1114 aa11.09□□□□□ -0.63
CCDC40-214ENST00000575431 MSL3Q8N5Y2 521 aaKnown RBP11.09□□□□□ -0.63
CCDC40-214ENST00000575431 SAMD3Q8N6K7 520 aa11.09□□□□□ -0.63
CCDC40-214ENST00000575431 RGS22Q8NE09 1264 aa11.09□□□□□ -0.63
CCDC40-214ENST00000575431 ARMC5Q96C12 935 aa11.09□□□□□ -0.63
CCDC40-214ENST00000575431 RRP36Q96EU6 259 aaKnown RBP11.09□□□□□ -0.63
CCDC40-214ENST00000575431 ZNF274Q96GC6 653 aaPredicted RBP11.09□□□□□ -0.63
CCDC40-214ENST00000575431 MAP3K20Q9NYL2 800 aaKnown RBP11.09□□□□□ -0.63
CCDC40-214ENST00000575431 RBM27Q9P2N5 1060 aaKnown RBP11.09□□□□□ -0.63
CCDC40-214ENST00000575431 SEC63Q9UGP8 760 aaKnown RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms