RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 KIF23Q02241 960 aaPredicted RBP27.68■■■□□ 2.02
ATPAF1-213ENST00000574428 USP17L24Q0WX57 530 aa27.68■■■□□ 2.02
ATPAF1-213ENST00000574428 MOGSQ13724 837 aa27.68■■■□□ 2.02
ATPAF1-213ENST00000574428 hCG_1984214I3L0E3 225 aa27.67■■■□□ 2.02
ATPAF1-213ENST00000574428 TAL1P17542 331 aaPredicted RBP27.67■■■□□ 2.02
ATPAF1-213ENST00000574428 SAFBQ15424 915 aaKnown RBP eCLIP27.67■■■□□ 2.02
ATPAF1-213ENST00000574428 SPRYD7Q5W111 196 aa27.67■■■□□ 2.02
ATPAF1-213ENST00000574428 DIS3L2Q8IYB7 885 aaKnown RBP27.67■■■□□ 2.02
ATPAF1-213ENST00000574428 ZNF713Q8N859 430 aaPredicted RBP27.67■■■□□ 2.02
ATPAF1-213ENST00000574428 CCDC148Q8NFR7 591 aa27.67■■■□□ 2.02
ATPAF1-213ENST00000574428 CHAMP1Q96JM3 812 aa27.67■■■□□ 2.02
ATPAF1-213ENST00000574428 NPY5RQ15761 445 aa27.66■■■□□ 2.02
ATPAF1-213ENST00000574428 USH1GQ495M9 461 aa27.66■■■□□ 2.02
ATPAF1-213ENST00000574428 FBXO11Q86XK2 927 aa27.66■■■□□ 2.02
ATPAF1-213ENST00000574428 OXER1Q8TDS5 423 aa27.66■■■□□ 2.02
ATPAF1-213ENST00000574428 ATG4CQ96DT6 458 aa27.66■■■□□ 2.02
ATPAF1-213ENST00000574428 AMNQ9BXJ7 453 aa27.66■■■□□ 2.02
ATPAF1-213ENST00000574428 PCDHA1Q9Y5I3 950 aa27.66■■■□□ 2.02
ATPAF1-213ENST00000574428 RLFQ13129 1914 aa27.66■■■□□ 2.02
ATPAF1-213ENST00000574428 BTBD18B2RXH4 712 aa27.65■■■□□ 2.02
ATPAF1-213ENST00000574428 ADAMTS3O15072 1205 aa27.65■■■□□ 2.02
ATPAF1-213ENST00000574428 COG2Q14746 738 aa27.65■■■□□ 2.02
ATPAF1-213ENST00000574428 FASTKD5Q7L8L6 764 aaKnown RBP27.65■■■□□ 2.02
ATPAF1-213ENST00000574428 AGTPBP1Q9UPW5 1226 aa27.65■■■□□ 2.02
ATPAF1-213ENST00000574428 ZNF157P51786 506 aaPredicted RBP27.65■■■□□ 2.02
ATPAF1-213ENST00000574428 GNL2Q13823 731 aaKnown RBP27.65■■■□□ 2.02
ATPAF1-213ENST00000574428 FAM173BQ6P4H8 233 aa27.65■■■□□ 2.02
ATPAF1-213ENST00000574428 CCDC12Q8WUD4 166 aaPredicted RBP27.65■■■□□ 2.02
ATPAF1-213ENST00000574428 ZBTB48P10074 688 aaPredicted RBP27.64■■■□□ 2.02
ATPAF1-213ENST00000574428 DSG3P32926 999 aa27.64■■■□□ 2.02
ATPAF1-213ENST00000574428 KRT2P35908 639 aa27.64■■■□□ 2.02
ATPAF1-213ENST00000574428 FSTL1Q12841 308 aa27.64■■■□□ 2.02
ATPAF1-213ENST00000574428 NR5A1Q13285 461 aa27.64■■■□□ 2.02
ATPAF1-213ENST00000574428 RASAL3Q86YV0 1011 aa27.64■■■□□ 2.02
ATPAF1-213ENST00000574428 MS4A4AQ96JQ5 239 aa27.64■■■□□ 2.02
ATPAF1-213ENST00000574428 ZSCAN16Q9H4T2 348 aaPredicted RBP27.64■■■□□ 2.02
ATPAF1-213ENST00000574428 SLC38A10Q9HBR0 1119 aa27.64■■■□□ 2.02
ATPAF1-213ENST00000574428 TLL2Q9Y6L7 1015 aa27.64■■■□□ 2.02
ATPAF1-213ENST00000574428 SMCO2A6NFE2 343 aa27.63■■■□□ 2.01
ATPAF1-213ENST00000574428 CALML3P27482 149 aa27.63■■■□□ 2.01
ATPAF1-213ENST00000574428 GTF2A2P52657 109 aa27.63■■■□□ 2.01
ATPAF1-213ENST00000574428 PPP1R18Q6NYC8 613 aa27.63■■■□□ 2.01
ATPAF1-213ENST00000574428 ZMYND12Q9H0C1 365 aa27.63■■■□□ 2.01
ATPAF1-213ENST00000574428 ABT1Q9ULW3 272 aaKnown RBP27.63■■■□□ 2.01
ATPAF1-213ENST00000574428 TMEM88BA6NKF7 163 aa27.63■■■□□ 2.01
ATPAF1-213ENST00000574428 VWA5AO00534 786 aa27.63■■■□□ 2.01
ATPAF1-213ENST00000574428 HOXA7P31268 230 aaPredicted RBP27.63■■■□□ 2.01
ATPAF1-213ENST00000574428 GPAT2Q6NUI2 795 aa27.63■■■□□ 2.01
ATPAF1-213ENST00000574428 RGMBQ6NW40 437 aa27.63■■■□□ 2.01
ATPAF1-213ENST00000574428 BRMS1Q9HCU9 246 aa27.63■■■□□ 2.01
ATPAF1-213ENST00000574428 PCDHA4Q9UN74 947 aa27.63■■■□□ 2.01
ATPAF1-213ENST00000574428 ZNF536O15090 1300 aa27.62■■■□□ 2.01
ATPAF1-213ENST00000574428 SPDYE16A6NNV3 312 aaPredicted RBP27.62■■■□□ 2.01
ATPAF1-213ENST00000574428 CETPP11597 493 aa27.62■■■□□ 2.01
ATPAF1-213ENST00000574428 U2AF2P26368 475 aaKnown RBP eCLIP27.62■■■□□ 2.01
ATPAF1-213ENST00000574428 FAM177A1Q8N128 213 aaPredicted RBP27.62■■■□□ 2.01
ATPAF1-213ENST00000574428 CCL15-CCL14A0A0B4J2E2 113 aa27.61■■■□□ 2.01
ATPAF1-213ENST00000574428 ZBED4O75132 1171 aa27.61■■■□□ 2.01
ATPAF1-213ENST00000574428 CCL15Q16663 113 aa27.61■■■□□ 2.01
ATPAF1-213ENST00000574428 BLIDQ8IZY5 108 aa27.61■■■□□ 2.01
ATPAF1-213ENST00000574428 CPXCR1Q8N123 301 aa27.61■■■□□ 2.01
ATPAF1-213ENST00000574428 AGBL1Q96MI9 1066 aa27.61■■■□□ 2.01
ATPAF1-213ENST00000574428 FOXP1Q9H334 677 aaPredicted RBP27.61■■■□□ 2.01
ATPAF1-213ENST00000574428 CTDP1Q9Y5B0 961 aaPredicted RBP27.61■■■□□ 2.01
ATPAF1-213ENST00000574428 ATP6V1DQ9Y5K8 247 aa27.61■■■□□ 2.01
ATPAF1-213ENST00000574428 ESYT2A0FGR8 921 aa27.6■■■□□ 2.01
ATPAF1-213ENST00000574428 IRX3P78415 501 aaPredicted RBP27.6■■■□□ 2.01
ATPAF1-213ENST00000574428 BRI3BPQ8WY22 251 aa27.6■■■□□ 2.01
ATPAF1-213ENST00000574428 ASCC2Q9H1I8 757 aaPredicted RBP27.6■■■□□ 2.01
ATPAF1-213ENST00000574428 RAVER2Q9HCJ3 691 aaKnown RBP27.6■■■□□ 2.01
ATPAF1-213ENST00000574428 C6orf50Q9HD87 102 aa27.6■■■□□ 2.01
ATPAF1-213ENST00000574428 HOXC10Q9NYD6 342 aa27.6■■■□□ 2.01
ATPAF1-213ENST00000574428 ADAMTS5Q9UNA0 930 aa27.6■■■□□ 2.01
ATPAF1-213ENST00000574428 MYPNQ86TC9 1320 aa27.6■■■□□ 2.01
ATPAF1-213ENST00000574428 ICAM1P05362 532 aa27.6■■■□□ 2.01
ATPAF1-213ENST00000574428 ADCY7P51828 1080 aa27.6■■■□□ 2.01
ATPAF1-213ENST00000574428 BRAPQ7Z569 592 aa27.6■■■□□ 2.01
ATPAF1-213ENST00000574428 NOSTRINQ8IVI9 506 aa27.6■■■□□ 2.01
ATPAF1-213ENST00000574428 DAGLBQ8NCG7 672 aa27.6■■■□□ 2.01
ATPAF1-213ENST00000574428 CCPG1Q9ULG6 757 aa27.6■■■□□ 2.01
ATPAF1-213ENST00000574428 BAG4O95429 457 aaKnown RBP27.59■■■□□ 2.01
ATPAF1-213ENST00000574428 GALNT17Q6IS24 598 aa27.59■■■□□ 2.01
ATPAF1-213ENST00000574428 RASGRP4Q8TDF6 673 aa27.59■■■□□ 2.01
ATPAF1-213ENST00000574428 P2RX7Q99572 595 aaKnown RBP27.59■■■□□ 2.01
ATPAF1-213ENST00000574428 COL11A1P12107 1806 aaPredicted RBP27.59■■■□□ 2.01
ATPAF1-213ENST00000574428 FDX1P10109 184 aa27.58■■■□□ 2.01
ATPAF1-213ENST00000574428 GNA11P29992 359 aa27.58■■■□□ 2.01
ATPAF1-213ENST00000574428 DNM1Q05193 864 aaKnown RBP27.58■■■□□ 2.01
ATPAF1-213ENST00000574428 PABPC4Q13310 644 aaKnown RBP eCLIP27.58■■■□□ 2.01
ATPAF1-213ENST00000574428 NOM1Q5C9Z4 860 aaKnown RBP27.58■■■□□ 2.01
ATPAF1-213ENST00000574428 REPS2Q8NFH8 660 aa27.58■■■□□ 2.01
ATPAF1-213ENST00000574428 TNFRSF25Q93038 417 aa27.58■■■□□ 2.01
ATPAF1-213ENST00000574428 PSTPIP2Q9H939 334 aa27.58■■■□□ 2
ATPAF1-213ENST00000574428 RIC8AQ9NPQ8 531 aa27.58■■■□□ 2
ATPAF1-213ENST00000574428 FAM205CA6NFA0 338 aa27.57■■■□□ 2
ATPAF1-213ENST00000574428 TRAF1Q13077 416 aa27.57■■■□□ 2
ATPAF1-213ENST00000574428 EARS2Q5JPH6 523 aaKnown RBP27.57■■■□□ 2
ATPAF1-213ENST00000574428 CUL5Q93034 780 aa27.57■■■□□ 2
ATPAF1-213ENST00000574428 SMCHD1A6NHR9 2005 aa27.57■■■□□ 2
ATPAF1-213ENST00000574428 MYH15Q9Y2K3 1946 aa27.57■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms