RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 RPAP3Q9H6T3 665 aaPredicted RBP15.71■□□□□ 0.11
CCDC40-209ENST00000573474 ZNF408Q9H9D4 720 aa15.71■□□□□ 0.11
CCDC40-209ENST00000573474 LMBRD1Q9NUN5 540 aa15.71■□□□□ 0.11
CCDC40-209ENST00000573474 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.71■□□□□ 0.11
CCDC40-209ENST00000573474 PAPPA2Q9BXP8 1791 aa15.71■□□□□ 0.11
CCDC40-209ENST00000573474 FIBPO43427 364 aa15.7■□□□□ 0.1
CCDC40-209ENST00000573474 ADCY7P51828 1080 aa15.7■□□□□ 0.1
CCDC40-209ENST00000573474 SNAP25P60880 206 aa15.7■□□□□ 0.1
CCDC40-209ENST00000573474 FMR1Q06787 632 aaKnown RBP eCLIP15.7■□□□□ 0.1
CCDC40-209ENST00000573474 PPIL2Q13356 520 aa15.7■□□□□ 0.1
CCDC40-209ENST00000573474 DGKZQ13574 1117 aa15.7■□□□□ 0.1
CCDC40-209ENST00000573474 RILPL1Q5EBL4 403 aa15.7■□□□□ 0.1
CCDC40-209ENST00000573474 SLC10A4Q96EP9 437 aa15.7■□□□□ 0.1
CCDC40-209ENST00000573474 SPATA32Q96LK8 384 aa15.7■□□□□ 0.1
CCDC40-209ENST00000573474 GLT8D2Q9H1C3 349 aa15.7■□□□□ 0.1
CCDC40-209ENST00000573474 GDPD2Q9HCC8 539 aa15.7■□□□□ 0.1
CCDC40-209ENST00000573474 FBXO28Q9NVF7 368 aa15.7■□□□□ 0.1
CCDC40-209ENST00000573474 RTEL1Q9NZ71 1219 aa15.7■□□□□ 0.1
CCDC40-209ENST00000573474 PCDHA1Q9Y5I3 950 aa15.7■□□□□ 0.1
CCDC40-209ENST00000573474 PHIPQ8WWQ0 1821 aa15.7■□□□□ 0.1
CCDC40-209ENST00000573474 M0R2N6 131 aa15.69■□□□□ 0.1
CCDC40-209ENST00000573474 FLOT1O75955 427 aa15.69■□□□□ 0.1
CCDC40-209ENST00000573474 FDX1P10109 184 aa15.69■□□□□ 0.1
CCDC40-209ENST00000573474 NBR1Q14596 966 aa15.69■□□□□ 0.1
CCDC40-209ENST00000573474 C2orf69Q8N8R5 385 aa15.69■□□□□ 0.1
CCDC40-209ENST00000573474 LEO1Q8WVC0 666 aaPredicted RBP15.69■□□□□ 0.1
CCDC40-209ENST00000573474 CNKSR2Q8WXI2 1034 aa15.69■□□□□ 0.1
CCDC40-209ENST00000573474 OTUD5Q96G74 571 aa15.69■□□□□ 0.1
CCDC40-209ENST00000573474 USP28Q96RU2 1077 aa15.69■□□□□ 0.1
CCDC40-209ENST00000573474 GBA2Q9HCG7 927 aaPredicted RBP15.69■□□□□ 0.1
CCDC40-209ENST00000573474 RIC8AQ9NPQ8 531 aa15.69■□□□□ 0.1
CCDC40-209ENST00000573474 POLR3EQ9NVU0 708 aa15.69■□□□□ 0.1
CCDC40-209ENST00000573474 RCOR1Q9UKL0 485 aa15.69■□□□□ 0.1
CCDC40-209ENST00000573474 PCDHA6Q9UN73 950 aa15.69■□□□□ 0.1
CCDC40-209ENST00000573474 KCNH4Q9UQ05 1017 aa15.69■□□□□ 0.1
CCDC40-209ENST00000573474 PCDHA8Q9Y5H6 950 aa15.69■□□□□ 0.1
CCDC40-209ENST00000573474 ELP1O95163 1332 aa15.68■□□□□ 0.1
CCDC40-209ENST00000573474 OTOFQ9HC10 1997 aa15.68■□□□□ 0.1
CCDC40-209ENST00000573474 USP17L15C9J2P7 530 aa15.68■□□□□ 0.1
CCDC40-209ENST00000573474 USP17L13C9JLJ4 530 aa15.68■□□□□ 0.1
CCDC40-209ENST00000573474 USP17L11C9JVI0 530 aa15.68■□□□□ 0.1
CCDC40-209ENST00000573474 USP17L18D6R9N7 530 aa15.68■□□□□ 0.1
CCDC40-209ENST00000573474 USP17L22D6RA61 530 aa15.68■□□□□ 0.1
CCDC40-209ENST00000573474 USP17L17D6RBQ6 530 aa15.68■□□□□ 0.1
CCDC40-209ENST00000573474 USP17L19D6RCP7 530 aa15.68■□□□□ 0.1
CCDC40-209ENST00000573474 USP17L20D6RJB6 530 aa15.68■□□□□ 0.1
CCDC40-209ENST00000573474 CELF2O95319 508 aaKnown RBP15.68■□□□□ 0.1
CCDC40-209ENST00000573474 ITGBL1O95965 494 aaPredicted RBP15.68■□□□□ 0.1
CCDC40-209ENST00000573474 NASPP49321 788 aaPredicted RBP15.68■□□□□ 0.1
CCDC40-209ENST00000573474 MRPL12P52815 198 aaKnown RBP15.68■□□□□ 0.1
CCDC40-209ENST00000573474 USP17L24Q0WX57 530 aa15.68■□□□□ 0.1
CCDC40-209ENST00000573474 SKOR2Q2VWA4 1001 aaPredicted RBP15.68■□□□□ 0.1
CCDC40-209ENST00000573474 ANO1Q5XXA6 986 aa15.68■□□□□ 0.1
CCDC40-209ENST00000573474 SAMD1Q6SPF0 538 aaPredicted RBP15.68■□□□□ 0.1
CCDC40-209ENST00000573474 CATSPERGQ6ZRH7 1159 aa15.68■□□□□ 0.1
CCDC40-209ENST00000573474 CUL5Q93034 780 aa15.68■□□□□ 0.1
CCDC40-209ENST00000573474 OPTNQ96CV9 577 aa15.68■□□□□ 0.1
CCDC40-209ENST00000573474 PSTPIP2Q9H939 334 aa15.68■□□□□ 0.1
CCDC40-209ENST00000573474 PPP1R9AQ9ULJ8 1098 aa15.68■□□□□ 0.1
CCDC40-209ENST00000573474 NOL7Q9UMY1 257 aaKnown RBP15.68■□□□□ 0.1
CCDC40-209ENST00000573474 A0A0G2JLL6 359 aaPredicted RBP15.67■□□□□ 0.1
CCDC40-209ENST00000573474 CCDC194A0A1B0GVG4 234 aa15.67■□□□□ 0.1
CCDC40-209ENST00000573474 IRF6O14896 467 aa15.67■□□□□ 0.1
CCDC40-209ENST00000573474 ADAMTS3O15072 1205 aa15.67■□□□□ 0.1
CCDC40-209ENST00000573474 ZBED4O75132 1171 aa15.67■□□□□ 0.1
CCDC40-209ENST00000573474 YEATS4O95619 227 aa15.67■□□□□ 0.1
CCDC40-209ENST00000573474 CEBPZQ03701 1054 aaKnown RBP15.67■□□□□ 0.1
CCDC40-209ENST00000573474 EARS2Q5JPH6 523 aaKnown RBP15.67■□□□□ 0.1
CCDC40-209ENST00000573474 CCDC174Q6PII3 467 aa15.67■□□□□ 0.1
CCDC40-209ENST00000573474 PIK3AP1Q6ZUJ8 805 aa15.67■□□□□ 0.1
CCDC40-209ENST00000573474 KRT25Q7Z3Z0 450 aa15.67■□□□□ 0.1
CCDC40-209ENST00000573474 PRRT2Q7Z6L0 340 aaPredicted RBP15.67■□□□□ 0.1
CCDC40-209ENST00000573474 TEX2Q8IWB9 1127 aa15.67■□□□□ 0.1
CCDC40-209ENST00000573474 REXO1Q8N1G1 1221 aaKnown RBP15.67■□□□□ 0.1
CCDC40-209ENST00000573474 PROCA1Q8NCQ7 364 aaPredicted RBP15.67■□□□□ 0.1
CCDC40-209ENST00000573474 PNMA2Q9UL42 364 aa15.67■□□□□ 0.1
CCDC40-209ENST00000573474 CTDP1Q9Y5B0 961 aaPredicted RBP15.67■□□□□ 0.1
CCDC40-209ENST00000573474 CLIC4Q9Y696 253 aa15.67■□□□□ 0.1
CCDC40-209ENST00000573474 DSG3P32926 999 aa15.66■□□□□ 0.1
CCDC40-209ENST00000573474 TRAPPC10P48553 1259 aa15.66■□□□□ 0.1
CCDC40-209ENST00000573474 TOB1P50616 345 aaPredicted RBP15.66■□□□□ 0.1
CCDC40-209ENST00000573474 COG2Q14746 738 aa15.66■□□□□ 0.1
CCDC40-209ENST00000573474 STK38Q15208 465 aa15.66■□□□□ 0.1
CCDC40-209ENST00000573474 USH1GQ495M9 461 aa15.66■□□□□ 0.1
CCDC40-209ENST00000573474 LINC00301Q8NCQ3 95 aa15.66■□□□□ 0.1
CCDC40-209ENST00000573474 RASGRP4Q8TDF6 673 aa15.66■□□□□ 0.1
CCDC40-209ENST00000573474 FTOQ9C0B1 505 aaKnown RBP eCLIP15.66■□□□□ 0.1
CCDC40-209ENST00000573474 SLC38A10Q9HBR0 1119 aa15.66■□□□□ 0.1
CCDC40-209ENST00000573474 GPBP1L1Q9HC44 474 aaPredicted RBP15.66■□□□□ 0.1
CCDC40-209ENST00000573474 HOXC10Q9NYD6 342 aa15.66■□□□□ 0.1
CCDC40-209ENST00000573474 MRPL11Q9Y3B7 192 aaKnown RBP15.66■□□□□ 0.1
CCDC40-209ENST00000573474 FAM205CA6NFA0 338 aa15.65■□□□□ 0.1
CCDC40-209ENST00000573474 TRAK2O60296 914 aa15.65■□□□□ 0.1
CCDC40-209ENST00000573474 ICAM1P05362 532 aa15.65■□□□□ 0.1
CCDC40-209ENST00000573474 UBE2HP62256 183 aa15.65■□□□□ 0.1
CCDC40-209ENST00000573474 SLC39A14Q15043 492 aa15.65■□□□□ 0.1
CCDC40-209ENST00000573474 SF3A1Q15459 793 aaKnown RBP15.65■□□□□ 0.1
CCDC40-209ENST00000573474 NOM1Q5C9Z4 860 aaKnown RBP15.65■□□□□ 0.1
CCDC40-209ENST00000573474 MCTP2Q6DN12 878 aa15.65■□□□□ 0.1
CCDC40-209ENST00000573474 GADL1Q6ZQY3 521 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms