RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 CFAP100Q494V2 611 aa11.58□□□□□ -0.56
CIITA-208ENST00000572665 PRAMEF18Q5VWM3 479 aa11.58□□□□□ -0.56
CIITA-208ENST00000572665 VPS37DQ86XT2 251 aa11.58□□□□□ -0.56
CIITA-208ENST00000572665 ZBED3Q96IU2 234 aaPredicted RBP11.58□□□□□ -0.56
CIITA-208ENST00000572665 TRERF1Q96PN7 1200 aa11.58□□□□□ -0.56
CIITA-208ENST00000572665 SCAF8Q9UPN6 1271 aaKnown RBP11.58□□□□□ -0.56
CIITA-208ENST00000572665 PNMA6FA0A0J9YX94 578 aa11.57□□□□□ -0.56
CIITA-208ENST00000572665 F8W031 263 aaPredicted RBP11.57□□□□□ -0.56
CIITA-208ENST00000572665 EIF1AYO14602 144 aaKnown RBP11.57□□□□□ -0.56
CIITA-208ENST00000572665 SASH3O75995 380 aa11.57□□□□□ -0.56
CIITA-208ENST00000572665 LDHBP07195 334 aaKnown RBP11.57□□□□□ -0.56
CIITA-208ENST00000572665 ZBTB48P10074 688 aaPredicted RBP11.57□□□□□ -0.56
CIITA-208ENST00000572665 HIBADHP31937 336 aaKnown RBP11.57□□□□□ -0.56
CIITA-208ENST00000572665 IREB2P48200 963 aaKnown RBP11.57□□□□□ -0.56
CIITA-208ENST00000572665 TNNI2P48788 182 aa11.57□□□□□ -0.56
CIITA-208ENST00000572665 SPEM2Q0P670 501 aa11.57□□□□□ -0.56
CIITA-208ENST00000572665 MAP3K11Q16584 847 aa11.57□□□□□ -0.56
CIITA-208ENST00000572665 CAVIN4Q5BKX8 364 aa11.57□□□□□ -0.56
CIITA-208ENST00000572665 OTUD7BQ6GQQ9 843 aa11.57□□□□□ -0.56
CIITA-208ENST00000572665 MOB2Q70IA6 237 aa11.57□□□□□ -0.56
CIITA-208ENST00000572665 VEZTQ9HBM0 779 aa11.57□□□□□ -0.56
CIITA-208ENST00000572665 ABI2Q9NYB9 513 aaPredicted RBP11.57□□□□□ -0.56
CIITA-208ENST00000572665 NXF1Q9UBU9 619 aaKnown RBP11.57□□□□□ -0.56
CIITA-208ENST00000572665 ARAP2Q8WZ64 1704 aa11.57□□□□□ -0.56
CIITA-208ENST00000572665 FAM205AQ6ZU69 1335 aa11.57□□□□□ -0.56
CIITA-208ENST00000572665 IRS2Q9Y4H2 1338 aa11.57□□□□□ -0.56
CIITA-208ENST00000572665 E9PSI1 815 aa11.56□□□□□ -0.56
CIITA-208ENST00000572665 FRAT2O75474 233 aaPredicted RBP11.56□□□□□ -0.56
CIITA-208ENST00000572665 PTPN12Q05209 780 aaKnown RBP11.56□□□□□ -0.56
CIITA-208ENST00000572665 PRKG1Q13976 671 aa11.56□□□□□ -0.56
CIITA-208ENST00000572665 MFSD14BQ5SR56 506 aa11.56□□□□□ -0.56
CIITA-208ENST00000572665 LDLRAD1Q5T700 205 aa11.56□□□□□ -0.56
CIITA-208ENST00000572665 KRT25Q7Z3Z0 450 aa11.56□□□□□ -0.56
CIITA-208ENST00000572665 TBC1D22AQ8WUA7 517 aa11.56□□□□□ -0.56
CIITA-208ENST00000572665 SLC30A3Q99726 388 aa11.56□□□□□ -0.56
CIITA-208ENST00000572665 DNAJC25Q9H1X3 360 aa11.56□□□□□ -0.56
CIITA-208ENST00000572665 UTYO14607 1347 aa11.56□□□□□ -0.56
CIITA-208ENST00000572665 CPNE3O75131 537 aaKnown RBP11.55□□□□□ -0.56
CIITA-208ENST00000572665 TBC1D8O95759 1140 aa11.55□□□□□ -0.56
CIITA-208ENST00000572665 TARSP26639 723 aaKnown RBP11.55□□□□□ -0.56
CIITA-208ENST00000572665 ATP2B2Q01814 1243 aa11.55□□□□□ -0.56
CIITA-208ENST00000572665 EPHA10Q5JZY3 1008 aa11.55□□□□□ -0.56
CIITA-208ENST00000572665 NPAS3Q8IXF0 933 aa11.55□□□□□ -0.56
CIITA-208ENST00000572665 ANKRD13AQ8IZ07 590 aa11.55□□□□□ -0.56
CIITA-208ENST00000572665 CERS5Q8N5B7 392 aa11.55□□□□□ -0.56
CIITA-208ENST00000572665 TDRD7Q8NHU6 1098 aaKnown RBP11.55□□□□□ -0.56
CIITA-208ENST00000572665 TTF2Q9UNY4 1162 aaKnown RBP11.55□□□□□ -0.56
CIITA-208ENST00000572665 HDAC5Q9UQL6 1122 aa11.55□□□□□ -0.56
CIITA-208ENST00000572665 LAMB1P07942 1786 aa11.54□□□□□ -0.56
CIITA-208ENST00000572665 CLRN2A0PK11 232 aa11.54□□□□□ -0.56
CIITA-208ENST00000572665 SNAP23O00161 211 aa11.54□□□□□ -0.56
CIITA-208ENST00000572665 FKTNO75072 461 aa11.54□□□□□ -0.56
CIITA-208ENST00000572665 PHACTR2O75167 634 aa11.54□□□□□ -0.56
CIITA-208ENST00000572665 PRPF40AO75400 957 aaKnown RBP11.54□□□□□ -0.56
CIITA-208ENST00000572665 RABL6Q3YEC7 729 aaPredicted RBP11.54□□□□□ -0.56
CIITA-208ENST00000572665 METTL24Q5JXM2 366 aa11.54□□□□□ -0.56
CIITA-208ENST00000572665 ZNF296Q8WUU4 475 aaPredicted RBP11.54□□□□□ -0.56
CIITA-208ENST00000572665 HOOK2Q96ED9 719 aa11.54□□□□□ -0.56
CIITA-208ENST00000572665 SUCLG2Q96I99 432 aa11.54□□□□□ -0.56
CIITA-208ENST00000572665 PRMT6Q96LA8 375 aaPredicted RBP11.54□□□□□ -0.56
CIITA-208ENST00000572665 CHRDQ9H2X0 955 aa11.54□□□□□ -0.56
CIITA-208ENST00000572665 EFCC1Q9HA90 598 aa11.54□□□□□ -0.56
CIITA-208ENST00000572665 ZFYVE28Q9HCC9 887 aa11.54□□□□□ -0.56
CIITA-208ENST00000572665 CNTN3Q9P232 1028 aa11.54□□□□□ -0.56
CIITA-208ENST00000572665 ZFATQ9P243 1243 aa11.54□□□□□ -0.56
CIITA-208ENST00000572665 MAST3O60307 1309 aa11.54□□□□□ -0.56
CIITA-208ENST00000572665 H3BM21 787 aa11.53□□□□□ -0.56
CIITA-208ENST00000572665 PDE8BO95263 885 aa11.53□□□□□ -0.56
CIITA-208ENST00000572665 IFIT1P09914 478 aaKnown RBP11.53□□□□□ -0.56
CIITA-208ENST00000572665 NBPF7P0C2Y1 421 aaPredicted RBP11.53□□□□□ -0.56
CIITA-208ENST00000572665 RARAP10276 462 aa11.53□□□□□ -0.56
CIITA-208ENST00000572665 NFKB1P19838 968 aa11.53□□□□□ -0.56
CIITA-208ENST00000572665 FGD1P98174 961 aa11.53□□□□□ -0.56
CIITA-208ENST00000572665 HDLBPQ00341 1268 aaKnown RBP11.53□□□□□ -0.56
CIITA-208ENST00000572665 CTBSQ01459 385 aa11.53□□□□□ -0.56
CIITA-208ENST00000572665 C1orf127Q8N9H9 656 aa11.53□□□□□ -0.56
CIITA-208ENST00000572665 FAM84BQ96KN1 310 aaPredicted RBP11.53□□□□□ -0.56
CIITA-208ENST00000572665 PNMA5Q96PV4 448 aa11.53□□□□□ -0.56
CIITA-208ENST00000572665 BICC1Q9H694 974 aaKnown RBP11.53□□□□□ -0.56
CIITA-208ENST00000572665 TMOD2Q9NZR1 351 aa11.53□□□□□ -0.56
CIITA-208ENST00000572665 RIPOR2Q9Y4F9 1068 aa11.53□□□□□ -0.56
CIITA-208ENST00000572665 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.53□□□□□ -0.56
CIITA-208ENST00000572665 ZNF521Q96K83 1311 aa11.53□□□□□ -0.56
CIITA-208ENST00000572665 MYH13Q9UKX3 1938 aa11.52□□□□□ -0.56
CIITA-208ENST00000572665 WDHD1O75717 1129 aaPredicted RBP11.52□□□□□ -0.57
CIITA-208ENST00000572665 GYG1P46976 350 aa11.52□□□□□ -0.57
CIITA-208ENST00000572665 RASA3Q14644 834 aa11.52□□□□□ -0.57
CIITA-208ENST00000572665 ALDH1L2Q3SY69 923 aa11.52□□□□□ -0.57
CIITA-208ENST00000572665 TTC39BQ5VTQ0 682 aaPredicted RBP11.52□□□□□ -0.57
CIITA-208ENST00000572665 ZNF787Q6DD87 383 aa11.52□□□□□ -0.57
CIITA-208ENST00000572665 ALG1LQ6GMV1 187 aa11.52□□□□□ -0.57
CIITA-208ENST00000572665 FBXO46Q6PJ61 603 aaPredicted RBP11.52□□□□□ -0.57
CIITA-208ENST00000572665 RAB44Q7Z6P3 723 aaPredicted RBP11.52□□□□□ -0.57
CIITA-208ENST00000572665 BHMTQ93088 406 aa11.52□□□□□ -0.57
CIITA-208ENST00000572665 WNK4Q96J92 1243 aa11.52□□□□□ -0.57
CIITA-208ENST00000572665 JAG2Q9Y219 1238 aa11.52□□□□□ -0.57
CIITA-208ENST00000572665 SUGT1Q9Y2Z0 365 aa11.52□□□□□ -0.57
CIITA-208ENST00000572665 KIF16BQ96L93 1317 aa11.52□□□□□ -0.57
CIITA-208ENST00000572665 MMP20O60882 483 aa11.51□□□□□ -0.57
CIITA-208ENST00000572665 CT47B1P0C2W7 299 aaPredicted RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms