RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 PLIN4Q96Q06 1357 aa9.58□□□□□ -0.88
VPS53-214ENST00000572607 LAMA2P24043 3122 aaKnown RBP9.57□□□□□ -0.88
VPS53-214ENST00000572607 PLXNB2O15031 1838 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 SLC15A5A6NIM6 579 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 ZNF213O14771 459 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 ORC4O43929 436 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 SLC25A27O95847 323 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 NDUFB10O96000 172 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 PCP11498 1178 aaKnown RBP9.57□□□□□ -0.88
VPS53-214ENST00000572607 XRCC5P13010 732 aaKnown RBP9.57□□□□□ -0.88
VPS53-214ENST00000572607 GJA8P48165 433 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 NT5C2P49902 561 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 MAP2K5Q13163 448 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 KIAA1755Q5JYT7 1200 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 SLFN13Q68D06 897 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 LAPTM4BQ86VI4 370 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 NCAPG2Q86XI2 1143 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 GMCL1P1Q8NEA9 526 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 SHCBP1Q8NEM2 672 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 RUFY2Q8WXA3 655 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 MKL1Q969V6 931 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 EPAS1Q99814 870 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 SLF1Q9BQI6 1058 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 MOV10L1Q9BXT6 1211 aaKnown RBP9.57□□□□□ -0.88
VPS53-214ENST00000572607 UNC93B1Q9H1C4 597 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 HMX1Q9NP08 348 aaPredicted RBP9.57□□□□□ -0.88
VPS53-214ENST00000572607 CTNNA3Q9UI47 895 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 PPP1R9AQ9ULJ8 1098 aa9.57□□□□□ -0.88
VPS53-214ENST00000572607 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.57□□□□□ -0.88
VPS53-214ENST00000572607 MYH8P13535 1937 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 FOXP2O15409 715 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 STRNO43815 780 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 ZBED4O75132 1171 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 TFRCP02786 760 aaKnown RBP9.56□□□□□ -0.88
VPS53-214ENST00000572607 BMP3P12645 472 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 ERCC3P19447 782 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 SLC1A4P43007 532 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 HAND2P61296 217 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 IKQ13123 557 aaPredicted RBP9.56□□□□□ -0.88
VPS53-214ENST00000572607 IMMTQ16891 758 aaKnown RBP9.56□□□□□ -0.88
VPS53-214ENST00000572607 MORN1Q5T089 497 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 MFSD14CQ5VZR4 134 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 MFSD6Q6ZSS7 791 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 DPP9Q86TI2 863 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 ANKK1Q8NFD2 765 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 U2AF1L4Q8WU68 220 aaKnown RBP9.56□□□□□ -0.88
VPS53-214ENST00000572607 ESR2Q92731 530 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 LRCH3Q96II8 777 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 DEFB118Q96PH6 123 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 NUP88Q99567 741 aaPredicted RBP9.56□□□□□ -0.88
VPS53-214ENST00000572607 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.56□□□□□ -0.88
VPS53-214ENST00000572607 FBXO28Q9NVF7 368 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 FEM1BQ9UK73 627 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 EYSQ5T1H1 3165 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 RPTORQ8N122 1335 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 RAD50Q92878 1312 aa9.56□□□□□ -0.88
VPS53-214ENST00000572607 VWA5AO00534 786 aa9.55□□□□□ -0.88
VPS53-214ENST00000572607 DLL1O00548 723 aa9.55□□□□□ -0.88
VPS53-214ENST00000572607 SGPL1O95470 568 aa9.55□□□□□ -0.88
VPS53-214ENST00000572607 NEFLP07196 543 aa9.55□□□□□ -0.88
VPS53-214ENST00000572607 FCER1AP12319 257 aa9.55□□□□□ -0.88
VPS53-214ENST00000572607 GSPT1P15170 499 aaKnown RBP9.55□□□□□ -0.88
VPS53-214ENST00000572607 STAT3P40763 770 aa9.55□□□□□ -0.88
VPS53-214ENST00000572607 GRB14Q14449 540 aa9.55□□□□□ -0.88
VPS53-214ENST00000572607 KCTD2Q14681 263 aa9.55□□□□□ -0.88
VPS53-214ENST00000572607 TMEM132BQ14DG7 1078 aa9.55□□□□□ -0.88
VPS53-214ENST00000572607 AKNAD1Q5T1N1 836 aa9.55□□□□□ -0.88
VPS53-214ENST00000572607 CENPQQ7L2Z9 268 aaPredicted RBP9.55□□□□□ -0.88
VPS53-214ENST00000572607 FAM160B2Q86V87 743 aa9.55□□□□□ -0.88
VPS53-214ENST00000572607 PRPF38AQ8NAV1 312 aaKnown RBP9.55□□□□□ -0.88
VPS53-214ENST00000572607 STAG1Q8WVM7 1258 aa9.55□□□□□ -0.88
VPS53-214ENST00000572607 TRIB2Q92519 343 aa9.55□□□□□ -0.88
VPS53-214ENST00000572607 KIFC2Q96AC6 838 aa9.55□□□□□ -0.88
VPS53-214ENST00000572607 DSCC1Q9BVC3 393 aa9.55□□□□□ -0.88
VPS53-214ENST00000572607 TEX13BQ9BXU2 312 aa9.55□□□□□ -0.88
VPS53-214ENST00000572607 FGRP09769 529 aa9.54□□□□□ -0.88
VPS53-214ENST00000572607 FDX1P10109 184 aa9.54□□□□□ -0.88
VPS53-214ENST00000572607 TOP1P11387 765 aaKnown RBP9.54□□□□□ -0.88
VPS53-214ENST00000572607 ADORA2AP29274 412 aa9.54□□□□□ -0.88
VPS53-214ENST00000572607 SLC4A3P48751 1232 aa9.54□□□□□ -0.88
VPS53-214ENST00000572607 STAT2P52630 851 aa9.54□□□□□ -0.88
VPS53-214ENST00000572607 CCDC96Q2M329 555 aa9.54□□□□□ -0.88
VPS53-214ENST00000572607 CCDC178Q5BJE1 867 aa9.54□□□□□ -0.88
VPS53-214ENST00000572607 C6orf132Q5T0Z8 1188 aa9.54□□□□□ -0.88
VPS53-214ENST00000572607 SNRNP48Q6IEG0 339 aaKnown RBP9.54□□□□□ -0.88
VPS53-214ENST00000572607 RIOX2Q8IUF8 465 aa9.54□□□□□ -0.88
VPS53-214ENST00000572607 ABRAQ8N0Z2 381 aa9.54□□□□□ -0.88
VPS53-214ENST00000572607 CHURC1Q8WUH1 139 aa9.54□□□□□ -0.88
VPS53-214ENST00000572607 USP6NLQ92738 828 aa9.54□□□□□ -0.88
VPS53-214ENST00000572607 GMCL1Q96IK5 515 aa9.54□□□□□ -0.88
VPS53-214ENST00000572607 MMP19Q99542 508 aa9.54□□□□□ -0.88
VPS53-214ENST00000572607 HTATIP2Q9BUP3 242 aa9.54□□□□□ -0.88
VPS53-214ENST00000572607 INCENPQ9NQS7 918 aa9.54□□□□□ -0.88
VPS53-214ENST00000572607 PAK6Q9NQU5 681 aaPredicted RBP9.54□□□□□ -0.88
VPS53-214ENST00000572607 ADAMTS5Q9UNA0 930 aa9.54□□□□□ -0.88
VPS53-214ENST00000572607 MTMR7Q9Y216 660 aa9.54□□□□□ -0.88
VPS53-214ENST00000572607 SPTBN5Q9NRC6 3674 aaKnown RBP9.54□□□□□ -0.88
VPS53-214ENST00000572607 TMEM232C9JQI7 657 aa9.53□□□□□ -0.88
VPS53-214ENST00000572607 FARP2O94887 1054 aaPredicted RBP9.53□□□□□ -0.88
VPS53-214ENST00000572607 HOXC6P09630 235 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms