RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 PAWRQ96IZ0 340 aaKnown RBP23.64■■□□□ 1.37
NUP88-204ENST00000572290 ESYT1Q9BSJ8 1104 aa23.64■■□□□ 1.37
NUP88-204ENST00000572290 UBAC1Q9BSL1 405 aa23.64■■□□□ 1.37
NUP88-204ENST00000572290 HOMER2Q9NSB8 354 aa23.64■■□□□ 1.37
NUP88-204ENST00000572290 DDX20Q9UHI6 824 aaKnown RBP23.64■■□□□ 1.37
NUP88-204ENST00000572290 MSCO60682 206 aa23.63■■□□□ 1.37
NUP88-204ENST00000572290 NECAB2Q7Z6G3 386 aa23.63■■□□□ 1.37
NUP88-204ENST00000572290 TINF2Q9BSI4 451 aa23.63■■□□□ 1.37
NUP88-204ENST00000572290 RANBP17Q9H2T7 1088 aaKnown RBP23.63■■□□□ 1.37
NUP88-204ENST00000572290 ACAD9Q9H845 621 aa23.63■■□□□ 1.37
NUP88-204ENST00000572290 RNF146Q9NTX7 359 aa23.63■■□□□ 1.37
NUP88-204ENST00000572290 DNAJC25-GNG10A0A024R161 153 aa23.62■■□□□ 1.37
NUP88-204ENST00000572290 ALAS1P13196 640 aa23.62■■□□□ 1.37
NUP88-204ENST00000572290 GPATCH4Q5T3I0 446 aaKnown RBP23.62■■□□□ 1.37
NUP88-204ENST00000572290 DIS3LQ8TF46 1054 aaKnown RBP23.62■■□□□ 1.37
NUP88-204ENST00000572290 RBM8AQ9Y5S9 174 aaKnown RBP23.62■■□□□ 1.37
NUP88-204ENST00000572290 MNX1P50219 401 aaPredicted RBP23.61■■□□□ 1.37
NUP88-204ENST00000572290 PRAMEF19Q5SWL8 479 aa23.61■■□□□ 1.37
NUP88-204ENST00000572290 CYB5R4Q7L1T6 521 aa23.61■■□□□ 1.37
NUP88-204ENST00000572290 DPF3Q92784 378 aa23.61■■□□□ 1.37
NUP88-204ENST00000572290 TRERF1Q96PN7 1200 aa23.61■■□□□ 1.37
NUP88-204ENST00000572290 CCPG1Q9ULG6 757 aa23.61■■□□□ 1.37
NUP88-204ENST00000572290 MKI67P46013 3256 aaKnown RBP23.61■■□□□ 1.37
NUP88-204ENST00000572290 E7EWF7 191 aa23.6■■□□□ 1.37
NUP88-204ENST00000572290 ICAM1P05362 532 aa23.6■■□□□ 1.37
NUP88-204ENST00000572290 IFIT1BQ5T764 474 aaKnown RBP23.6■■□□□ 1.37
NUP88-204ENST00000572290 RALYLQ86SE5 291 aaKnown RBP23.6■■□□□ 1.37
NUP88-204ENST00000572290 MSL3Q8N5Y2 521 aaKnown RBP23.6■■□□□ 1.37
NUP88-204ENST00000572290 NCOA7Q8NI08 942 aa23.6■■□□□ 1.37
NUP88-204ENST00000572290 LSG1Q9H089 658 aaKnown RBP23.6■■□□□ 1.37
NUP88-204ENST00000572290 NRBP1Q9UHY1 535 aa23.6■■□□□ 1.37
NUP88-204ENST00000572290 TAF6LQ9Y6J9 622 aa23.6■■□□□ 1.37
NUP88-204ENST00000572290 LAMA4Q16363 1823 aa23.6■■□□□ 1.37
NUP88-204ENST00000572290 SEPT4O43236 478 aa23.59■■□□□ 1.37
NUP88-204ENST00000572290 GOLGA8HP0CJ92 632 aa23.59■■□□□ 1.37
NUP88-204ENST00000572290 COL11A1P12107 1806 aaPredicted RBP23.59■■□□□ 1.37
NUP88-204ENST00000572290 SEC23AQ15436 765 aa23.58■■□□□ 1.37
NUP88-204ENST00000572290 STOX1Q6ZVD7 989 aa23.58■■□□□ 1.37
NUP88-204ENST00000572290 ZNF467Q7Z7K2 595 aaPredicted RBP23.58■■□□□ 1.37
NUP88-204ENST00000572290 C11orf49Q9H6J7 331 aa23.58■■□□□ 1.37
NUP88-204ENST00000572290 ANO2Q9NQ90 1003 aa23.58■■□□□ 1.37
NUP88-204ENST00000572290 A1CFQ9NQ94 594 aaKnown RBP23.58■■□□□ 1.37
NUP88-204ENST00000572290 POTEB2H3BUK9 544 aa23.57■■□□□ 1.36
NUP88-204ENST00000572290 ASPRV1Q53RT3 343 aa23.57■■□□□ 1.36
NUP88-204ENST00000572290 MUM1L1Q5H9M0 696 aa23.57■■□□□ 1.36
NUP88-204ENST00000572290 CASC1Q6TDU7 716 aa23.57■■□□□ 1.36
NUP88-204ENST00000572290 MAMDC4Q6UXC1 1216 aa23.57■■□□□ 1.36
NUP88-204ENST00000572290 UBA5Q9GZZ9 404 aa23.57■■□□□ 1.36
NUP88-204ENST00000572290 PNMA2Q9UL42 364 aa23.57■■□□□ 1.36
NUP88-204ENST00000572290 CNPY2Q9Y2B0 182 aa23.57■■□□□ 1.36
NUP88-204ENST00000572290 SYNGAP1Q96PV0 1343 aa23.57■■□□□ 1.36
NUP88-204ENST00000572290 ERICH2A1L162 156 aa23.56■■□□□ 1.36
NUP88-204ENST00000572290 IFIT3O14879 490 aaKnown RBP23.56■■□□□ 1.36
NUP88-204ENST00000572290 CDC45O75419 566 aa23.56■■□□□ 1.36
NUP88-204ENST00000572290 TAL1P17542 331 aaPredicted RBP23.56■■□□□ 1.36
NUP88-204ENST00000572290 ANO1Q5XXA6 986 aa23.56■■□□□ 1.36
NUP88-204ENST00000572290 PFASO15067 1338 aa23.56■■□□□ 1.36
NUP88-204ENST00000572290 SLC34A2O95436 690 aa23.55■■□□□ 1.36
NUP88-204ENST00000572290 CENPBP07199 599 aaPredicted RBP23.55■■□□□ 1.36
NUP88-204ENST00000572290 PARP1P09874 1014 aaKnown RBP23.55■■□□□ 1.36
NUP88-204ENST00000572290 SART3Q15020 963 aaKnown RBP23.55■■□□□ 1.36
NUP88-204ENST00000572290 FAM133AQ8N9E0 248 aa23.55■■□□□ 1.36
NUP88-204ENST00000572290 FGD4Q96M96 766 aa23.55■■□□□ 1.36
NUP88-204ENST00000572290 CPVLQ9H3G5 476 aa23.55■■□□□ 1.36
NUP88-204ENST00000572290 SNAI1O95863 264 aaPredicted RBP23.54■■□□□ 1.36
NUP88-204ENST00000572290 ZNF865P0CJ78 1059 aaPredicted RBP23.54■■□□□ 1.36
NUP88-204ENST00000572290 CNTN2Q02246 1040 aa23.54■■□□□ 1.36
NUP88-204ENST00000572290 NSMFQ6X4W1 530 aa23.54■■□□□ 1.36
NUP88-204ENST00000572290 CYP39A1Q9NYL5 469 aa23.54■■□□□ 1.36
NUP88-204ENST00000572290 WDR19Q8NEZ3 1342 aa23.54■■□□□ 1.36
NUP88-204ENST00000572290 SLC27A2O14975 620 aa23.53■■□□□ 1.36
NUP88-204ENST00000572290 COL6A1P12109 1028 aa23.53■■□□□ 1.36
NUP88-204ENST00000572290 WTAPQ15007 396 aa23.53■■□□□ 1.36
NUP88-204ENST00000572290 CHST3Q7LGC8 479 aa23.53■■□□□ 1.36
NUP88-204ENST00000572290 MB21D2Q8IYB1 491 aaPredicted RBP23.53■■□□□ 1.36
NUP88-204ENST00000572290 ARRDC4Q8NCT1 418 aa23.53■■□□□ 1.36
NUP88-204ENST00000572290 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.53■■□□□ 1.36
NUP88-204ENST00000572290 NR2E3Q9Y5X4 410 aa23.53■■□□□ 1.36
NUP88-204ENST00000572290 SOWAHBA6NEL2 793 aa23.52■■□□□ 1.36
NUP88-204ENST00000572290 H0YGN5 161 aa23.52■■□□□ 1.36
NUP88-204ENST00000572290 DNM1LO00429 736 aa23.52■■□□□ 1.36
NUP88-204ENST00000572290 EVI5O60447 810 aa23.52■■□□□ 1.36
NUP88-204ENST00000572290 AKR1A1P14550 325 aa23.52■■□□□ 1.36
NUP88-204ENST00000572290 NECTIN1Q15223 517 aa23.52■■□□□ 1.36
NUP88-204ENST00000572290 CREB3L3Q68CJ9 461 aa23.52■■□□□ 1.36
NUP88-204ENST00000572290 ARMCX2Q7L311 632 aa23.52■■□□□ 1.36
NUP88-204ENST00000572290 ADGRF4Q8IZF3 695 aa23.52■■□□□ 1.36
NUP88-204ENST00000572290 ZHX1Q9UKY1 873 aaPredicted RBP23.52■■□□□ 1.36
NUP88-204ENST00000572290 NFIBO00712 420 aa23.51■■□□□ 1.35
NUP88-204ENST00000572290 DHX16O60231 1041 aaKnown RBP23.51■■□□□ 1.35
NUP88-204ENST00000572290 RARBP10826 455 aa23.51■■□□□ 1.35
NUP88-204ENST00000572290 ANTXR2P58335 489 aa23.51■■□□□ 1.35
NUP88-204ENST00000572290 CDC37Q16543 378 aaPredicted RBP23.51■■□□□ 1.35
NUP88-204ENST00000572290 TMEM67Q5HYA8 995 aa23.51■■□□□ 1.35
NUP88-204ENST00000572290 ASB14A6NK59 587 aa23.5■■□□□ 1.35
NUP88-204ENST00000572290 ACVR2BQ13705 512 aa23.5■■□□□ 1.35
NUP88-204ENST00000572290 BAATQ14032 418 aaPredicted RBP23.5■■□□□ 1.35
NUP88-204ENST00000572290 GJC2Q5T442 439 aaPredicted RBP23.5■■□□□ 1.35
NUP88-204ENST00000572290 ERICH6BQ5W0A0 696 aa23.5■■□□□ 1.35
NUP88-204ENST00000572290 CCDC144CPQ8IYA2 1237 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms