RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 KIF4BQ2VIQ3 1234 aa7.76□□□□□ -1.17
VPS53-212ENST00000572259 HDXQ7Z353 690 aa7.76□□□□□ -1.17
VPS53-212ENST00000572259 NKD1Q969G9 470 aa7.76□□□□□ -1.17
VPS53-212ENST00000572259 EAF1Q96JC9 268 aaPredicted RBP7.76□□□□□ -1.17
VPS53-212ENST00000572259 PICK1Q9NRD5 415 aa7.76□□□□□ -1.17
VPS53-212ENST00000572259 TYW1Q9NV66 732 aaKnown RBP7.76□□□□□ -1.17
VPS53-212ENST00000572259 GEMIN8Q9NWZ8 242 aaKnown RBP7.76□□□□□ -1.17
VPS53-212ENST00000572259 UBP1Q9NZI7 540 aa7.76□□□□□ -1.17
VPS53-212ENST00000572259 ABCC6O95255 1503 aa7.76□□□□□ -1.17
VPS53-212ENST00000572259 NSD3Q9BZ95 1437 aa7.76□□□□□ -1.17
VPS53-212ENST00000572259 LMO7Q8WWI1 1683 aa7.76□□□□□ -1.17
VPS53-212ENST00000572259 KIF20BQ96Q89 1820 aa7.75□□□□□ -1.17
VPS53-212ENST00000572259 COL5A2P05997 1499 aaPredicted RBP7.75□□□□□ -1.17
VPS53-212ENST00000572259 CCDC7Q96M83 1385 aa7.75□□□□□ -1.17
VPS53-212ENST00000572259 COL18A1P39060 1754 aa7.75□□□□□ -1.17
VPS53-212ENST00000572259 EXOC5O00471 708 aa7.75□□□□□ -1.17
VPS53-212ENST00000572259 SART1O43290 800 aaKnown RBP7.75□□□□□ -1.17
VPS53-212ENST00000572259 SH3BP5O60239 455 aa7.75□□□□□ -1.17
VPS53-212ENST00000572259 FGRP09769 529 aa7.75□□□□□ -1.17
VPS53-212ENST00000572259 RPL6Q02878 288 aaKnown RBP7.75□□□□□ -1.17
VPS53-212ENST00000572259 MPP2Q14168 576 aa7.75□□□□□ -1.17
VPS53-212ENST00000572259 DDB1Q16531 1140 aa7.75□□□□□ -1.17
VPS53-212ENST00000572259 CWF19L2Q2TBE0 894 aaKnown RBP7.75□□□□□ -1.17
VPS53-212ENST00000572259 C4orf46Q504U0 113 aa7.75□□□□□ -1.17
VPS53-212ENST00000572259 NBPF6Q5VWK0 638 aa7.75□□□□□ -1.17
VPS53-212ENST00000572259 TSHZ1Q6ZSZ6 1077 aa7.75□□□□□ -1.17
VPS53-212ENST00000572259 MCF2L2Q86YR7 1114 aa7.75□□□□□ -1.17
VPS53-212ENST00000572259 AGGF1Q8N302 714 aaeCLIP7.75□□□□□ -1.17
VPS53-212ENST00000572259 NBPF4Q96M43 638 aa7.75□□□□□ -1.17
VPS53-212ENST00000572259 CACNA2D2Q9NY47 1150 aa7.75□□□□□ -1.17
VPS53-212ENST00000572259 G3BP2Q9UN86 482 aaKnown RBP7.75□□□□□ -1.17
VPS53-212ENST00000572259 SNCAIPQ9Y6H5 919 aa7.75□□□□□ -1.17
VPS53-212ENST00000572259 OVOS2A0A0J9YW53 1432 aa7.75□□□□□ -1.17
VPS53-212ENST00000572259 BLMP54132 1417 aaPredicted RBP7.75□□□□□ -1.17
VPS53-212ENST00000572259 OVOS2Q6IE36 1432 aa7.75□□□□□ -1.17
VPS53-212ENST00000572259 MAP2P11137 1827 aaKnown RBP7.75□□□□□ -1.17
VPS53-212ENST00000572259 NFAT5O94916 1531 aa7.74□□□□□ -1.17
VPS53-212ENST00000572259 FAM221AA4D161 298 aa7.74□□□□□ -1.17
VPS53-212ENST00000572259 DCDC2CA8MYV0 355 aa7.74□□□□□ -1.17
VPS53-212ENST00000572259 PPP1R12AO14974 1030 aaPredicted RBP7.74□□□□□ -1.17
VPS53-212ENST00000572259 CILPO75339 1184 aa7.74□□□□□ -1.17
VPS53-212ENST00000572259 ALX3O95076 343 aa7.74□□□□□ -1.17
VPS53-212ENST00000572259 GLB1P16278 677 aa7.74□□□□□ -1.17
VPS53-212ENST00000572259 MCM4P33991 863 aa7.74□□□□□ -1.17
VPS53-212ENST00000572259 ZEB1P37275 1124 aaPredicted RBP7.74□□□□□ -1.17
VPS53-212ENST00000572259 RHBDL3P58872 404 aa7.74□□□□□ -1.17
VPS53-212ENST00000572259 ID3Q02535 119 aa7.74□□□□□ -1.17
VPS53-212ENST00000572259 SEZ6Q53EL9 994 aa7.74□□□□□ -1.17
VPS53-212ENST00000572259 ANKRD34AQ69YU3 496 aa7.74□□□□□ -1.17
VPS53-212ENST00000572259 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.74□□□□□ -1.17
VPS53-212ENST00000572259 TMTC2Q8N394 836 aa7.74□□□□□ -1.17
VPS53-212ENST00000572259 NME8Q8N427 588 aa7.74□□□□□ -1.17
VPS53-212ENST00000572259 SMG8Q8ND04 991 aaKnown RBP7.74□□□□□ -1.17
VPS53-212ENST00000572259 FBXO27Q8NI29 283 aa7.74□□□□□ -1.17
VPS53-212ENST00000572259 CEP41Q9BYV8 373 aa7.74□□□□□ -1.17
VPS53-212ENST00000572259 AP4E1Q9UPM8 1137 aa7.74□□□□□ -1.17
VPS53-212ENST00000572259 EP400Q96L91 3159 aa7.74□□□□□ -1.17
VPS53-212ENST00000572259 MAP3K19Q56UN5 1328 aa7.74□□□□□ -1.17
VPS53-212ENST00000572259 SYNGAP1Q96PV0 1343 aa7.74□□□□□ -1.17
VPS53-212ENST00000572259 NSD2O96028 1365 aa7.73□□□□□ -1.17
VPS53-212ENST00000572259 KIF24Q5T7B8 1368 aa7.73□□□□□ -1.17
VPS53-212ENST00000572259 SMG6Q86US8 1419 aaKnown RBP7.73□□□□□ -1.17
VPS53-212ENST00000572259 K7ELQ4 463 aaPredicted RBP7.73□□□□□ -1.17
VPS53-212ENST00000572259 PRC1O43663 620 aa7.73□□□□□ -1.17
VPS53-212ENST00000572259 HOXC9P31274 260 aa7.73□□□□□ -1.17
VPS53-212ENST00000572259 GJA8P48165 433 aa7.73□□□□□ -1.17
VPS53-212ENST00000572259 IREB2P48200 963 aaKnown RBP7.73□□□□□ -1.17
VPS53-212ENST00000572259 SOX4Q06945 474 aaPredicted RBP7.73□□□□□ -1.17
VPS53-212ENST00000572259 INPP5AQ14642 412 aa7.73□□□□□ -1.17
VPS53-212ENST00000572259 RRS1Q15050 365 aaKnown RBP7.73□□□□□ -1.17
VPS53-212ENST00000572259 PLEKHG4Q58EX7 1191 aa7.73□□□□□ -1.17
VPS53-212ENST00000572259 WIPI1Q5MNZ9 446 aaPredicted RBP7.73□□□□□ -1.17
VPS53-212ENST00000572259 DYMQ7RTS9 669 aa7.73□□□□□ -1.17
VPS53-212ENST00000572259 MORC1Q86VD1 984 aa7.73□□□□□ -1.17
VPS53-212ENST00000572259 STAG1Q8WVM7 1258 aa7.73□□□□□ -1.17
VPS53-212ENST00000572259 MKL1Q969V6 931 aa7.73□□□□□ -1.17
VPS53-212ENST00000572259 EVI5LQ96CN4 794 aa7.73□□□□□ -1.17
VPS53-212ENST00000572259 LTV1Q96GA3 475 aaPredicted RBP7.73□□□□□ -1.17
VPS53-212ENST00000572259 PLPPR2Q96GM1 343 aa7.73□□□□□ -1.17
VPS53-212ENST00000572259 KRTAP4-8Q9BYQ9 185 aa7.73□□□□□ -1.17
VPS53-212ENST00000572259 SUGCTQ9HAC7 445 aa7.73□□□□□ -1.17
VPS53-212ENST00000572259 CSADQ9Y600 493 aa7.73□□□□□ -1.17
VPS53-212ENST00000572259 KIF7Q2M1P5 1343 aa7.73□□□□□ -1.17
VPS53-212ENST00000572259 MYOM1P52179 1685 aa7.73□□□□□ -1.17
VPS53-212ENST00000572259 RTL1A6NKG5 1358 aa7.72□□□□□ -1.17
VPS53-212ENST00000572259 DRD2P14416 443 aa7.72□□□□□ -1.17
VPS53-212ENST00000572259 IL2RBP14784 551 aa7.72□□□□□ -1.17
VPS53-212ENST00000572259 CRKP46108 304 aa7.72□□□□□ -1.17
VPS53-212ENST00000572259 BIRC2Q13490 618 aa7.72□□□□□ -1.17
VPS53-212ENST00000572259 ZC3H12AQ5D1E8 599 aaKnown RBP7.72□□□□□ -1.17
VPS53-212ENST00000572259 LRFN4Q6PJG9 635 aa7.72□□□□□ -1.17
VPS53-212ENST00000572259 C12orf40Q86WS4 652 aa7.72□□□□□ -1.17
VPS53-212ENST00000572259 CKAP2LQ8IYA6 745 aa7.72□□□□□ -1.17
VPS53-212ENST00000572259 RASGRP4Q8TDF6 673 aa7.72□□□□□ -1.17
VPS53-212ENST00000572259 WFDC12Q8WWY7 111 aa7.72□□□□□ -1.17
VPS53-212ENST00000572259 LRRC3Q9BY71 257 aa7.72□□□□□ -1.17
VPS53-212ENST00000572259 MAF1Q9H063 256 aa7.72□□□□□ -1.17
VPS53-212ENST00000572259 PPP1R9AQ9ULJ8 1098 aa7.72□□□□□ -1.17
VPS53-212ENST00000572259 FLT4P35916 1363 aa7.71□□□□□ -1.17
VPS53-212ENST00000572259 FAM208AQ9UK61 1670 aaKnown RBP7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms