RNA–Protein interactions for RNA: ENST00000572083.5

CCDC40-206, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 816 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-206ENST00000572083 GNASQ5JWF2 1037 aa23.78■■□□□ 1.4
CCDC40-206ENST00000572083 ARMCX2Q7L311 632 aa23.78■■□□□ 1.4
CCDC40-206ENST00000572083 ABHD16BQ9H3Z7 469 aa23.78■■□□□ 1.4
CCDC40-206ENST00000572083 MKNK2Q9HBH9 465 aa23.78■■□□□ 1.4
CCDC40-206ENST00000572083 NYAP2Q9P242 653 aa23.78■■□□□ 1.4
CCDC40-206ENST00000572083 MYH4Q9Y623 1939 aa23.78■■□□□ 1.4
CCDC40-206ENST00000572083 TLR3O15455 904 aaKnown RBP23.77■■□□□ 1.4
CCDC40-206ENST00000572083 RAB11FIP3O75154 756 aa23.77■■□□□ 1.4
CCDC40-206ENST00000572083 CYP2C18P33260 490 aa23.77■■□□□ 1.4
CCDC40-206ENST00000572083 ADGRE1Q14246 886 aa23.77■■□□□ 1.4
CCDC40-206ENST00000572083 RPAP2Q8IXW5 612 aaPredicted RBP23.77■■□□□ 1.4
CCDC40-206ENST00000572083 ATXN2LQ8WWM7 1075 aaKnown RBP23.77■■□□□ 1.4
CCDC40-206ENST00000572083 CLIP2Q9UDT6 1046 aa23.77■■□□□ 1.4
CCDC40-206ENST00000572083 RAPGEFL1Q9UHV5 662 aa23.77■■□□□ 1.4
CCDC40-206ENST00000572083 BEX3Q00994 111 aa23.76■■□□□ 1.39
CCDC40-206ENST00000572083 AKNAD1Q5T1N1 836 aa23.76■■□□□ 1.39
CCDC40-206ENST00000572083 ZSCAN25Q6NSZ9 544 aa23.76■■□□□ 1.39
CCDC40-206ENST00000572083 CCDC144CPQ8IYA2 1237 aa23.76■■□□□ 1.39
CCDC40-206ENST00000572083 SLC38A10Q9HBR0 1119 aa23.76■■□□□ 1.39
CCDC40-206ENST00000572083 HOMER2Q9NSB8 354 aa23.76■■□□□ 1.39
CCDC40-206ENST00000572083 CXXC1Q9P0U4 656 aaPredicted RBP23.76■■□□□ 1.39
CCDC40-206ENST00000572083 GBF1Q92538 1859 aa23.76■■□□□ 1.39
CCDC40-206ENST00000572083 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.75■■□□□ 1.39
CCDC40-206ENST00000572083 MINDY4BA8MYZ0 360 aa23.75■■□□□ 1.39
CCDC40-206ENST00000572083 CTAGE5O15320 804 aa23.75■■□□□ 1.39
CCDC40-206ENST00000572083 IGFBP4P22692 258 aa23.75■■□□□ 1.39
CCDC40-206ENST00000572083 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.75■■□□□ 1.39
CCDC40-206ENST00000572083 ADAMTS19Q8TE59 1207 aa23.75■■□□□ 1.39
CCDC40-206ENST00000572083 ASB2Q96Q27 587 aa23.75■■□□□ 1.39
CCDC40-206ENST00000572083 KATNBL1Q9H079 304 aa23.75■■□□□ 1.39
CCDC40-206ENST00000572083 NKX2-4Q9H2Z4 354 aa23.75■■□□□ 1.39
CCDC40-206ENST00000572083 IL23AQ9NPF7 189 aa23.75■■□□□ 1.39
CCDC40-206ENST00000572083 MSRAQ9UJ68 235 aa23.75■■□□□ 1.39
CCDC40-206ENST00000572083 CD4P01730 458 aa23.74■■□□□ 1.39
CCDC40-206ENST00000572083 CNTN2Q02246 1040 aa23.74■■□□□ 1.39
CCDC40-206ENST00000572083 RAB30Q15771 203 aa23.74■■□□□ 1.39
CCDC40-206ENST00000572083 SBK1Q52WX2 424 aa23.74■■□□□ 1.39
CCDC40-206ENST00000572083 STRBPQ96SI9 672 aaKnown RBP23.74■■□□□ 1.39
CCDC40-206ENST00000572083 FBXO40Q9UH90 709 aa23.74■■□□□ 1.39
CCDC40-206ENST00000572083 UMODL1Q5DID0 1318 aa23.74■■□□□ 1.39
CCDC40-206ENST00000572083 GSG1L2A8MUP6 293 aa23.73■■□□□ 1.39
CCDC40-206ENST00000572083 LRRC47Q8N1G4 583 aaKnown RBP23.73■■□□□ 1.39
CCDC40-206ENST00000572083 CHST13Q8NET6 341 aa23.73■■□□□ 1.39
CCDC40-206ENST00000572083 HERVK_113Q902F9 699 aa23.73■■□□□ 1.39
CCDC40-206ENST00000572083 YBX2Q9Y2T7 364 aaKnown RBP23.73■■□□□ 1.39
CCDC40-206ENST00000572083 MYO9BQ13459 2157 aa23.73■■□□□ 1.39
CCDC40-206ENST00000572083 IGKV6D-41A0A0C4DH26 115 aa23.72■■□□□ 1.39
CCDC40-206ENST00000572083 PRDM1O75626 825 aa23.72■■□□□ 1.39
CCDC40-206ENST00000572083 CXCL17Q6UXB2 119 aa23.72■■□□□ 1.39
CCDC40-206ENST00000572083 NOL8Q76FK4 1167 aaKnown RBP23.72■■□□□ 1.39
CCDC40-206ENST00000572083 CEP95Q96GE4 821 aa23.72■■□□□ 1.39
CCDC40-206ENST00000572083 UHRF1Q96T88 793 aaPredicted RBP23.72■■□□□ 1.39
CCDC40-206ENST00000572083 HIPK3Q9H422 1215 aa23.72■■□□□ 1.39
CCDC40-206ENST00000572083 ZBTB40Q9NUA8 1239 aa23.72■■□□□ 1.39
CCDC40-206ENST00000572083 FEM1BQ9UK73 627 aa23.72■■□□□ 1.39
CCDC40-206ENST00000572083 COG6Q9Y2V7 657 aa23.72■■□□□ 1.39
CCDC40-206ENST00000572083 ASTN1O14525 1302 aa23.72■■□□□ 1.39
CCDC40-206ENST00000572083 LRRC37A2A6NM11 1700 aa23.72■■□□□ 1.39
CCDC40-206ENST00000572083 PTGS1P23219 599 aa23.71■■□□□ 1.39
CCDC40-206ENST00000572083 MRPS5P82675 430 aaKnown RBP23.71■■□□□ 1.39
CCDC40-206ENST00000572083 TNFAIP2Q03169 654 aa23.71■■□□□ 1.39
CCDC40-206ENST00000572083 OTOP2Q7RTS6 562 aa23.71■■□□□ 1.39
CCDC40-206ENST00000572083 MTIF3Q9H2K0 278 aaKnown RBP23.71■■□□□ 1.39
CCDC40-206ENST00000572083 EPB41L4AQ9HCS5 686 aaPredicted RBP23.71■■□□□ 1.39
CCDC40-206ENST00000572083 ISY1Q9ULR0 285 aaKnown RBP23.71■■□□□ 1.39
CCDC40-206ENST00000572083 FGBP02675 491 aa23.7■■□□□ 1.38
CCDC40-206ENST00000572083 OAZ1P54368 228 aa23.7■■□□□ 1.38
CCDC40-206ENST00000572083 CCL23P55773 120 aa23.7■■□□□ 1.38
CCDC40-206ENST00000572083 TLK2Q86UE8 772 aa23.7■■□□□ 1.38
CCDC40-206ENST00000572083 SLC28A3Q9HAS3 691 aa23.7■■□□□ 1.38
CCDC40-206ENST00000572083 DDX19BQ9UMR2 479 aa23.7■■□□□ 1.38
CCDC40-206ENST00000572083 DDX49Q9Y6V7 483 aaKnown RBP23.7■■□□□ 1.38
CCDC40-206ENST00000572083 BDP1A6H8Y1 2624 aa23.69■■□□□ 1.38
CCDC40-206ENST00000572083 SMARCA5O60264 1052 aaPredicted RBP23.69■■□□□ 1.38
CCDC40-206ENST00000572083 NKX3-2P78367 333 aa23.69■■□□□ 1.38
CCDC40-206ENST00000572083 GIMAP6Q6P9H5 292 aa23.69■■□□□ 1.38
CCDC40-206ENST00000572083 FAM133AQ8N9E0 248 aa23.69■■□□□ 1.38
CCDC40-206ENST00000572083 SLC43A3Q8NBI5 491 aa23.69■■□□□ 1.38
CCDC40-206ENST00000572083 IL27Q8NEV9 243 aa23.69■■□□□ 1.38
CCDC40-206ENST00000572083 OSBP2Q969R2 916 aa23.69■■□□□ 1.38
CCDC40-206ENST00000572083 MKL1Q969V6 931 aa23.69■■□□□ 1.38
CCDC40-206ENST00000572083 ACAD9Q9H845 621 aa23.69■■□□□ 1.38
CCDC40-206ENST00000572083 MTMR4Q9NYA4 1195 aa23.69■■□□□ 1.38
CCDC40-206ENST00000572083 TTLL1O95922 423 aa23.68■■□□□ 1.38
CCDC40-206ENST00000572083 MS4A1P11836 297 aa23.68■■□□□ 1.38
CCDC40-206ENST00000572083 TDO2P48775 406 aa23.68■■□□□ 1.38
CCDC40-206ENST00000572083 RABGGTBP53611 331 aa23.68■■□□□ 1.38
CCDC40-206ENST00000572083 ITGA7Q13683 1181 aa23.68■■□□□ 1.38
CCDC40-206ENST00000572083 FSCN1Q16658 493 aaKnown RBP23.68■■□□□ 1.38
CCDC40-206ENST00000572083 ZNF444Q8N0Y2 327 aaPredicted RBP23.68■■□□□ 1.38
CCDC40-206ENST00000572083 MICALL1Q8N3F8 863 aa23.68■■□□□ 1.38
CCDC40-206ENST00000572083 CHMP4CQ96CF2 233 aa23.68■■□□□ 1.38
CCDC40-206ENST00000572083 LRRCC1Q9C099 1032 aa23.68■■□□□ 1.38
CCDC40-206ENST00000572083 A1CFQ9NQ94 594 aaKnown RBP23.68■■□□□ 1.38
CCDC40-206ENST00000572083 GNEQ9Y223 722 aaKnown RBP23.68■■□□□ 1.38
CCDC40-206ENST00000572083 GRIN2DO15399 1336 aa23.67■■□□□ 1.38
CCDC40-206ENST00000572083 SOWAHBA6NEL2 793 aa23.67■■□□□ 1.38
CCDC40-206ENST00000572083 TMEM232C9JQI7 657 aa23.67■■□□□ 1.38
CCDC40-206ENST00000572083 B4GALT4O60513 344 aa23.67■■□□□ 1.38
CCDC40-206ENST00000572083 BMP3P12645 472 aa23.67■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms