RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 BANK1Q8NDB2 785 aa8.64□□□□□ -1.03
CHD3-213ENST00000571249 DNAAF4Q8WXU2 420 aa8.64□□□□□ -1.03
CHD3-213ENST00000571249 MRPL38Q96DV4 380 aaKnown RBP8.64□□□□□ -1.03
CHD3-213ENST00000571249 TGS1Q96RS0 853 aaKnown RBP8.64□□□□□ -1.03
CHD3-213ENST00000571249 SPATC1LQ9H0A9 340 aa8.64□□□□□ -1.03
CHD3-213ENST00000571249 SLC5A4Q9NY91 659 aa8.64□□□□□ -1.03
CHD3-213ENST00000571249 PCDHGC5Q9Y5F6 944 aa8.64□□□□□ -1.03
CHD3-213ENST00000571249 TET1Q8NFU7 2136 aa8.63□□□□□ -1.03
CHD3-213ENST00000571249 PDE8BO95263 885 aa8.63□□□□□ -1.03
CHD3-213ENST00000571249 ASNSP08243 561 aa8.63□□□□□ -1.03
CHD3-213ENST00000571249 PRR29P0C7W0 189 aa8.63□□□□□ -1.03
CHD3-213ENST00000571249 CYP2C9P11712 490 aa8.63□□□□□ -1.03
CHD3-213ENST00000571249 CST5P28325 142 aaPredicted RBP8.63□□□□□ -1.03
CHD3-213ENST00000571249 BTDP43251 543 aa8.63□□□□□ -1.03
CHD3-213ENST00000571249 ATXN1P54253 815 aaKnown RBP8.63□□□□□ -1.03
CHD3-213ENST00000571249 RHBDL3P58872 404 aa8.63□□□□□ -1.03
CHD3-213ENST00000571249 PDE4DQ08499 809 aa8.63□□□□□ -1.03
CHD3-213ENST00000571249 CXCL17Q6UXB2 119 aa8.63□□□□□ -1.03
CHD3-213ENST00000571249 LBX2Q6XYB7 198 aa8.63□□□□□ -1.03
CHD3-213ENST00000571249 NCAPG2Q86XI2 1143 aa8.63□□□□□ -1.03
CHD3-213ENST00000571249 GPIHBP1Q8IV16 184 aa8.63□□□□□ -1.03
CHD3-213ENST00000571249 VGLL2Q8N8G2 317 aa8.63□□□□□ -1.03
CHD3-213ENST00000571249 PCSK9Q8NBP7 692 aaKnown RBP8.63□□□□□ -1.03
CHD3-213ENST00000571249 SHCBP1Q8NEM2 672 aa8.63□□□□□ -1.03
CHD3-213ENST00000571249 RIPOR3Q96MK2 946 aa8.63□□□□□ -1.03
CHD3-213ENST00000571249 ZBED2Q9BTP6 218 aa8.63□□□□□ -1.03
CHD3-213ENST00000571249 STK31Q9BXU1 1019 aa8.63□□□□□ -1.03
CHD3-213ENST00000571249 IGF2RP11717 2491 aa8.63□□□□□ -1.03
CHD3-213ENST00000571249 USP9XQ93008 2570 aaPredicted RBP8.63□□□□□ -1.03
CHD3-213ENST00000571249 ROBO3Q96MS0 1386 aa8.62□□□□□ -1.03
CHD3-213ENST00000571249 DCDC2BA2VCK2 349 aa8.62□□□□□ -1.03
CHD3-213ENST00000571249 SOBPA7XYQ1 873 aa8.62□□□□□ -1.03
CHD3-213ENST00000571249 LOC730098B7Z3J9 87 aa8.62□□□□□ -1.03
CHD3-213ENST00000571249 DUSP11O75319 330 aaKnown RBP8.62□□□□□ -1.03
CHD3-213ENST00000571249 PFKMP08237 780 aa8.62□□□□□ -1.03
CHD3-213ENST00000571249 IFIT1P09914 478 aaKnown RBP8.62□□□□□ -1.03
CHD3-213ENST00000571249 ACTN1P12814 892 aa8.62□□□□□ -1.03
CHD3-213ENST00000571249 VCAM1P19320 739 aa8.62□□□□□ -1.03
CHD3-213ENST00000571249 PSMC6P62333 389 aa8.62□□□□□ -1.03
CHD3-213ENST00000571249 DEFB103AP81534 67 aa8.62□□□□□ -1.03
CHD3-213ENST00000571249 TSPYL6Q8N831 410 aa8.62□□□□□ -1.03
CHD3-213ENST00000571249 FBXO22Q8NEZ5 403 aa8.62□□□□□ -1.03
CHD3-213ENST00000571249 FTOQ9C0B1 505 aaKnown RBP eCLIP8.62□□□□□ -1.03
CHD3-213ENST00000571249 DNAJC18Q9H819 358 aa8.62□□□□□ -1.03
CHD3-213ENST00000571249 IFT57Q9NWB7 429 aa8.62□□□□□ -1.03
CHD3-213ENST00000571249 FAM184BQ9ULE4 1060 aa8.62□□□□□ -1.03
CHD3-213ENST00000571249 PTPRSQ13332 1948 aa8.62□□□□□ -1.03
CHD3-213ENST00000571249 TRIM66O15016 1216 aa8.61□□□□□ -1.03
CHD3-213ENST00000571249 SNAI1O95863 264 aaPredicted RBP8.61□□□□□ -1.03
CHD3-213ENST00000571249 LMNAP02545 664 aaKnown RBP8.61□□□□□ -1.03
CHD3-213ENST00000571249 ADRB1P08588 477 aa8.61□□□□□ -1.03
CHD3-213ENST00000571249 PTGS1P23219 599 aa8.61□□□□□ -1.03
CHD3-213ENST00000571249 GTF2F1P35269 517 aaKnown RBP eCLIP8.61□□□□□ -1.03
CHD3-213ENST00000571249 ITGA7Q13683 1181 aa8.61□□□□□ -1.03
CHD3-213ENST00000571249 PLS1Q14651 629 aa8.61□□□□□ -1.03
CHD3-213ENST00000571249 CTC1Q2NKJ3 1217 aa8.61□□□□□ -1.03
CHD3-213ENST00000571249 ZNF792Q3KQV3 632 aa8.61□□□□□ -1.03
CHD3-213ENST00000571249 FAM117BQ6P1L5 589 aa8.61□□□□□ -1.03
CHD3-213ENST00000571249 C12orf42Q96LP6 360 aa8.61□□□□□ -1.03
CHD3-213ENST00000571249 RPAP3Q9H6T3 665 aaPredicted RBP8.61□□□□□ -1.03
CHD3-213ENST00000571249 TRMT13Q9NUP7 481 aaKnown RBP8.61□□□□□ -1.03
CHD3-213ENST00000571249 ZHX1Q9UKY1 873 aaPredicted RBP8.61□□□□□ -1.03
CHD3-213ENST00000571249 ZBTB21Q9ULJ3 1066 aa8.61□□□□□ -1.03
CHD3-213ENST00000571249 CNPY2Q9Y2B0 182 aa8.61□□□□□ -1.03
CHD3-213ENST00000571249 ZNF236Q9UL36 1845 aa8.61□□□□□ -1.03
CHD3-213ENST00000571249 TNKSO95271 1327 aa8.6□□□□□ -1.03
CHD3-213ENST00000571249 KIF16BQ96L93 1317 aa8.6□□□□□ -1.03
CHD3-213ENST00000571249 LINC01565O15544 149 aa8.6□□□□□ -1.03
CHD3-213ENST00000571249 TBX10O75333 385 aa8.6□□□□□ -1.03
CHD3-213ENST00000571249 FCER1AP12319 257 aa8.6□□□□□ -1.03
CHD3-213ENST00000571249 FGFR2P21802 821 aa8.6□□□□□ -1.03
CHD3-213ENST00000571249 PDE4AP27815 886 aa8.6□□□□□ -1.03
CHD3-213ENST00000571249 GJA9P57773 515 aa8.6□□□□□ -1.03
CHD3-213ENST00000571249 WDR5P61964 334 aaKnown RBP8.6□□□□□ -1.03
CHD3-213ENST00000571249 GNAI1P63096 354 aa8.6□□□□□ -1.03
CHD3-213ENST00000571249 FKBP5Q13451 457 aaPredicted RBP8.6□□□□□ -1.03
CHD3-213ENST00000571249 SMAD4Q13485 552 aaKnown RBP8.6□□□□□ -1.03
CHD3-213ENST00000571249 CBX2Q14781 532 aaPredicted RBP8.6□□□□□ -1.03
CHD3-213ENST00000571249 KIAA0319Q5VV43 1072 aa8.6□□□□□ -1.03
CHD3-213ENST00000571249 ABRAQ8N0Z2 381 aa8.6□□□□□ -1.03
CHD3-213ENST00000571249 CRIPAKQ8N1N5 446 aa8.6□□□□□ -1.03
CHD3-213ENST00000571249 ACER1Q8TDN7 264 aa8.6□□□□□ -1.03
CHD3-213ENST00000571249 HINFPQ9BQA5 517 aa8.6□□□□□ -1.03
CHD3-213ENST00000571249 UPF3AQ9H1J1 476 aaKnown RBP8.6□□□□□ -1.03
CHD3-213ENST00000571249 ZNFX1Q9P2E3 1918 aaKnown RBP8.6□□□□□ -1.03
CHD3-213ENST00000571249 CNOT1A5YKK6 2376 aaKnown RBP8.59□□□□□ -1.03
CHD3-213ENST00000571249 SALL1Q9NSC2 1324 aa8.59□□□□□ -1.03
CHD3-213ENST00000571249 MYH2Q9UKX2 1941 aa8.59□□□□□ -1.03
CHD3-213ENST00000571249 DSPP15924 2871 aaKnown RBP8.59□□□□□ -1.03
CHD3-213ENST00000571249 PPP1R37O75864 691 aa8.59□□□□□ -1.03
CHD3-213ENST00000571249 HYAL1Q12794 435 aa8.59□□□□□ -1.03
CHD3-213ENST00000571249 PUM3Q15397 648 aaKnown RBP8.59□□□□□ -1.03
CHD3-213ENST00000571249 PTPROQ16827 1216 aa8.59□□□□□ -1.03
CHD3-213ENST00000571249 TIGD5Q53EQ6 642 aa8.59□□□□□ -1.03
CHD3-213ENST00000571249 DZIP1Q86YF9 867 aaKnown RBP8.59□□□□□ -1.03
CHD3-213ENST00000571249 ZNF384Q8TF68 577 aa8.59□□□□□ -1.03
CHD3-213ENST00000571249 PPP1R13LQ8WUF5 828 aa8.59□□□□□ -1.03
CHD3-213ENST00000571249 RUNDC1Q96C34 613 aa8.59□□□□□ -1.03
CHD3-213ENST00000571249 RPGRIP1Q96KN7 1286 aa8.59□□□□□ -1.03
CHD3-213ENST00000571249 RAD9AQ99638 391 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms