RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 CCDC82Q8N4S0 544 aa9.14□□□□□ -0.95
VPS39-213ENST00000570062 DAGLBQ8NCG7 672 aa9.14□□□□□ -0.95
VPS39-213ENST00000570062 LINC00301Q8NCQ3 95 aa9.14□□□□□ -0.95
VPS39-213ENST00000570062 GPT2Q8TD30 523 aa9.14□□□□□ -0.95
VPS39-213ENST00000570062 GMCL1Q96IK5 515 aa9.14□□□□□ -0.95
VPS39-213ENST00000570062 RIOX1Q9H6W3 641 aa9.14□□□□□ -0.95
VPS39-213ENST00000570062 BARHL2Q9NY43 387 aa9.14□□□□□ -0.95
VPS39-213ENST00000570062 TFIP11Q9UBB9 837 aaKnown RBP9.14□□□□□ -0.95
VPS39-213ENST00000570062 CNOT7Q9UIV1 285 aaKnown RBP9.14□□□□□ -0.95
VPS39-213ENST00000570062 HOOK1Q9UJC3 728 aaKnown RBP9.14□□□□□ -0.95
VPS39-213ENST00000570062 GOLGB1Q14789 3259 aaKnown RBP9.14□□□□□ -0.95
VPS39-213ENST00000570062 TRIM75PA6NK02 468 aa9.13□□□□□ -0.95
VPS39-213ENST00000570062 TCP10L2B9ZVM9 353 aa9.13□□□□□ -0.95
VPS39-213ENST00000570062 SMIM22K7EJ46 135 aa9.13□□□□□ -0.95
VPS39-213ENST00000570062 LAD1O00515 517 aa9.13□□□□□ -0.95
VPS39-213ENST00000570062 PLEKHA8P1O95397 391 aa9.13□□□□□ -0.95
VPS39-213ENST00000570062 CMA1P23946 247 aa9.13□□□□□ -0.95
VPS39-213ENST00000570062 GMPSP49915 693 aaPredicted RBP9.13□□□□□ -0.95
VPS39-213ENST00000570062 MRPL12P52815 198 aaKnown RBP9.13□□□□□ -0.95
VPS39-213ENST00000570062 ICA1Q05084 483 aa9.13□□□□□ -0.95
VPS39-213ENST00000570062 ZNF543Q08ER8 600 aa9.13□□□□□ -0.95
VPS39-213ENST00000570062 LAPTM4AQ15012 233 aa9.13□□□□□ -0.95
VPS39-213ENST00000570062 SLC4A8Q2Y0W8 1093 aa9.13□□□□□ -0.95
VPS39-213ENST00000570062 ZSCAN23Q3MJ62 389 aa9.13□□□□□ -0.95
VPS39-213ENST00000570062 SH3BP5LQ7L8J4 393 aa9.13□□□□□ -0.95
VPS39-213ENST00000570062 FERMT2Q96AC1 680 aa9.13□□□□□ -0.95
VPS39-213ENST00000570062 USP28Q96RU2 1077 aa9.13□□□□□ -0.95
VPS39-213ENST00000570062 FHDC1Q9C0D6 1143 aaPredicted RBP9.13□□□□□ -0.95
VPS39-213ENST00000570062 VEZTQ9HBM0 779 aa9.13□□□□□ -0.95
VPS39-213ENST00000570062 GOPCQ9HD26 462 aa9.13□□□□□ -0.95
VPS39-213ENST00000570062 PCDHA4Q9UN74 947 aa9.13□□□□□ -0.95
VPS39-213ENST00000570062 LAMB1P07942 1786 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 PITPNM2Q9BZ72 1349 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 PNMA6FA0A0J9YX94 578 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 BTBD18B2RXH4 712 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 GRIN3BO60391 1043 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 PLA2G6O60733 806 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 CUTAO60888 179 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 EEF2P13639 858 aaKnown RBP9.12□□□□□ -0.95
VPS39-213ENST00000570062 OSBPP22059 807 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 LMOD1P29536 600 aaPredicted RBP9.12□□□□□ -0.95
VPS39-213ENST00000570062 SLC1A4P43007 532 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 SUPT20HL1Q3ZLR7 823 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 SLFN13Q68D06 897 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 LRSAM1Q6UWE0 723 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 NUDT18Q6ZVK8 323 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 ZFPM1Q8IX07 1006 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 ELOA2Q8IYF1 753 aaPredicted RBP9.12□□□□□ -0.95
VPS39-213ENST00000570062 BLIDQ8IZY5 108 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 CHURC1Q8WUH1 139 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 MRPS27Q92552 414 aaKnown RBP9.12□□□□□ -0.95
VPS39-213ENST00000570062 TIGD1Q96MW7 591 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 MTRQ99707 1265 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 SYT17Q9BSW7 474 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 IL21Q9HBE4 155 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 GDPD2Q9HCC8 539 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 FAM13BQ9NYF5 915 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 GJA3Q9Y6H8 435 aa9.12□□□□□ -0.95
VPS39-213ENST00000570062 NAV1Q8NEY1 1877 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 CCDC194A0A1B0GVG4 234 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 CLRN2A0PK11 232 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 F5H6K3 240 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 CTNND1O60716 968 aaKnown RBP9.11□□□□□ -0.95
VPS39-213ENST00000570062 KINO60870 393 aaKnown RBP9.11□□□□□ -0.95
VPS39-213ENST00000570062 RNF40O75150 1001 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 FDX1P10109 184 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 GUCY1A2P33402 732 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 CAP2P40123 477 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 CACNB3P54284 484 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 ATP2B2Q01814 1243 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 FAM160A1Q05DH4 1040 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 KLRC3Q07444 240 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 RASA3Q14644 834 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 MAP3K11Q16584 847 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 KIF4BQ2VIQ3 1234 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 ARL6IP4Q66PJ3 421 aaKnown RBP9.11□□□□□ -0.95
VPS39-213ENST00000570062 OTUD7BQ6GQQ9 843 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 KANK3Q6NY19 840 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 FAM173BQ6P4H8 233 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 USP17L2Q6R6M4 530 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 KRT25Q7Z3Z0 450 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 FAM160B2Q86V87 743 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 KRI1Q8N9T8 703 aaKnown RBP9.11□□□□□ -0.95
VPS39-213ENST00000570062 LPAR1Q92633 364 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 ZMYND12Q9H0C1 365 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 GZF1Q9H116 711 aaPredicted RBP9.11□□□□□ -0.95
VPS39-213ENST00000570062 NUP62CLQ9H1M0 184 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 CDHR5Q9HBB8 845 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 AS3MTQ9HBK9 375 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 GPRC5DQ9NZD1 345 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 VPS54Q9P1Q0 977 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 USP25Q9UHP3 1055 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 TMX2Q9Y320 296 aa9.11□□□□□ -0.95
VPS39-213ENST00000570062 FAM237AA0A1B0GTK4 181 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 FSD2A1L4K1 749 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 USP17L5A8MUK1 530 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 ZBTB5O15062 677 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 GFRA3O60609 400 aa9.1□□□□□ -0.95
VPS39-213ENST00000570062 GADD45BO75293 160 aaPredicted RBP9.1□□□□□ -0.95
VPS39-213ENST00000570062 GH2P01242 217 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms