RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 GJA3Q9Y6H8 435 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP3.72□□□□□ -1.81
VPS35-209ENST00000568642 NRXN3Q9Y4C0 1643 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 C1orf167Q5SNV9 1468 aa3.72□□□□□ -1.81
VPS35-209ENST00000568642 LTBP1Q14766 1721 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 LRRIQ1Q96JM4 1722 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 ANO9A1A5B4 782 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 DYTNA2CJ06 578 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 HIP1RO75146 1068 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 IGHDP01880 384 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 PF4P02776 101 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 F11P03951 625 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 CAPNS1P04632 268 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 INHAP05111 366 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 CNGA1P29973 690 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 HIRAP54198 1017 aaPredicted RBP3.71□□□□□ -1.82
VPS35-209ENST00000568642 RAB15P59190 212 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 ERVK-9P63128 1117 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 FAM160A1Q05DH4 1040 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 IFRD2Q12894 506 aaPredicted RBP3.71□□□□□ -1.82
VPS35-209ENST00000568642 GRM2Q14416 872 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 INAVAQ3KP66 663 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 ALFQ53S48 1182 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 ESCO1Q5FWF5 840 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 TMEM67Q5HYA8 995 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 HYIQ5T013 277 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 NBPF10Q6P3W6 841 aaKnown RBP3.71□□□□□ -1.82
VPS35-209ENST00000568642 XKR5Q6UX68 686 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 NECAB2Q7Z6G3 386 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 DZIP3Q86Y13 1208 aaKnown RBP3.71□□□□□ -1.82
VPS35-209ENST00000568642 SLC9A9Q8IVB4 645 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 GALNT12Q8IXK2 581 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 DRC7Q8IY82 874 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 FBXO27Q8NI29 283 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 USP33Q8TEY7 942 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 SNRNP27Q8WVK2 155 aaKnown RBP3.71□□□□□ -1.82
VPS35-209ENST00000568642 ZNF669Q96BR6 464 aaPredicted RBP3.71□□□□□ -1.82
VPS35-209ENST00000568642 EXOC2Q96KP1 924 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 GPAMQ9HCL2 828 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 ANLNQ9NQW6 1124 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 DDX20Q9UHI6 824 aaKnown RBP3.71□□□□□ -1.82
VPS35-209ENST00000568642 HCN2Q9UL51 889 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 MAPRE3Q9UPY8 281 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 RBM19Q9Y4C8 960 aaKnown RBP3.71□□□□□ -1.82
VPS35-209ENST00000568642 RNF114Q9Y508 228 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 ATRXP46100 2492 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 ADGRL2O95490 1459 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 SBF1O95248 1867 aa3.71□□□□□ -1.82
VPS35-209ENST00000568642 SPTBN5Q9NRC6 3674 aaKnown RBP3.7□□□□□ -1.82
VPS35-209ENST00000568642 MUC6Q6W4X9 2439 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 GOLGA6CA6NDK9 693 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 GOLGA6BA6NDN3 693 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 VSTM5A8MXK1 200 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 FAM229AH3BQW9 127 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 ERVH48-1M5A8F1 160 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 GPR39O43194 453 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 PPP1R12BO60237 982 aaPredicted RBP3.7□□□□□ -1.82
VPS35-209ENST00000568642 NBNO60934 754 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 H2AFB1P0C5Y9 115 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 H2AFB2P0C5Z0 115 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 GOLGA6DP0CG33 693 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 TAL1P17542 331 aaPredicted RBP3.7□□□□□ -1.82
VPS35-209ENST00000568642 GRNP28799 593 aaKnown RBP3.7□□□□□ -1.82
VPS35-209ENST00000568642 RXRGP48443 463 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 ZBED6P86452 979 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 GBX1Q14549 363 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 GRM3Q14832 879 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 SETDB1Q15047 1291 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 MTERF2Q49AM1 385 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 TNNI3KQ59H18 835 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 MZT2AQ6P582 158 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 SLC4A10Q6U841 1118 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 C1orf122Q6ZSJ8 110 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 EPM2AIP1Q7L775 607 aaPredicted RBP3.7□□□□□ -1.82
VPS35-209ENST00000568642 TPH2Q8IWU9 490 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 CLASRPQ8N2M8 674 aaKnown RBP3.7□□□□□ -1.82
VPS35-209ENST00000568642 NKAIN3Q8N8D7 197 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 RBBP8NLQ8NC74 664 aaPredicted RBP3.7□□□□□ -1.82
VPS35-209ENST00000568642 ST13P5Q8NFI4 369 aaPredicted RBP3.7□□□□□ -1.82
VPS35-209ENST00000568642 RIN3Q8TB24 985 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 GPR152Q8TDT2 470 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 GJA10Q969M2 543 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 CHMP4CQ96CF2 233 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 ABHD17AQ96GS6 310 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 MPP4Q96JB8 637 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 LRRC3Q9BY71 257 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 PCGF6Q9BYE7 350 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 SRCIN1Q9C0H9 1055 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 SLC12A5Q9H2X9 1139 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 RETREG1Q9H6L5 497 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 TCF7L1Q9HCS4 588 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 GOLGA6AQ9NYA3 693 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 ACTR10Q9NZ32 417 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 KLK14Q9P0G3 267 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 USP25Q9UHP3 1055 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 MCM8Q9UJA3 840 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 PHF24Q9UPV7 400 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 AKAP2Q9Y2D5 859 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 PLEKHG2Q9H7P9 1386 aa3.7□□□□□ -1.82
VPS35-209ENST00000568642 PXDNQ92626 1479 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms