RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 FAM161BQ96MY7 647 aa17.73■□□□□ 0.43
CLN3-228ENST00000567804 ABHD16BQ9H3Z7 469 aa17.73■□□□□ 0.43
CLN3-228ENST00000567804 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.73■□□□□ 0.43
CLN3-228ENST00000567804 CUL9Q8IWT3 2517 aa17.72■□□□□ 0.43
CLN3-228ENST00000567804 A0A0C4DFX4 3053 aa17.72■□□□□ 0.43
CLN3-228ENST00000567804 ADCY6O43306 1168 aa17.72■□□□□ 0.43
CLN3-228ENST00000567804 CST5P28325 142 aaPredicted RBP17.72■□□□□ 0.43
CLN3-228ENST00000567804 KCNA10Q16322 511 aa17.72■□□□□ 0.43
CLN3-228ENST00000567804 CCDC129Q6ZRS4 1044 aa17.72■□□□□ 0.43
CLN3-228ENST00000567804 ARMCX2Q7L311 632 aa17.72■□□□□ 0.43
CLN3-228ENST00000567804 ANKRD33Q7Z3H0 272 aa17.72■□□□□ 0.43
CLN3-228ENST00000567804 FAM160B2Q86V87 743 aa17.72■□□□□ 0.43
CLN3-228ENST00000567804 GMCL1Q96IK5 515 aa17.72■□□□□ 0.43
CLN3-228ENST00000567804 TOX2Q96NM4 488 aa17.72■□□□□ 0.43
CLN3-228ENST00000567804 ACAD9Q9H845 621 aa17.72■□□□□ 0.43
CLN3-228ENST00000567804 HOMER2Q9NSB8 354 aa17.72■□□□□ 0.43
CLN3-228ENST00000567804 ISY1Q9ULR0 285 aaKnown RBP17.72■□□□□ 0.43
CLN3-228ENST00000567804 ZNF536O15090 1300 aa17.72■□□□□ 0.43
CLN3-228ENST00000567804 RAG1P15918 1043 aa17.71■□□□□ 0.43
CLN3-228ENST00000567804 SLC1A4P43007 532 aa17.71■□□□□ 0.43
CLN3-228ENST00000567804 IRX5P78411 483 aaPredicted RBP17.71■□□□□ 0.43
CLN3-228ENST00000567804 CTDSPL2Q05D32 466 aa17.71■□□□□ 0.43
CLN3-228ENST00000567804 FAAP100Q0VG06 881 aa17.71■□□□□ 0.43
CLN3-228ENST00000567804 CCDC144BQ3MJ40 725 aa17.71■□□□□ 0.43
CLN3-228ENST00000567804 PPP4R3BQ5MIZ7 849 aa17.71■□□□□ 0.43
CLN3-228ENST00000567804 FAM133AQ8N9E0 248 aa17.71■□□□□ 0.43
CLN3-228ENST00000567804 CHURC1Q8WUH1 139 aa17.71■□□□□ 0.43
CLN3-228ENST00000567804 STAG1Q8WVM7 1258 aa17.71■□□□□ 0.43
CLN3-228ENST00000567804 KATNBL1Q9H079 304 aa17.71■□□□□ 0.43
CLN3-228ENST00000567804 UPF3AQ9H1J1 476 aaKnown RBP17.71■□□□□ 0.43
CLN3-228ENST00000567804 TMEM39AQ9NV64 488 aa17.71■□□□□ 0.43
CLN3-228ENST00000567804 TSPY2A6NKD2 308 aa17.7■□□□□ 0.42
CLN3-228ENST00000567804 DCDC2CA8MYV0 355 aa17.7■□□□□ 0.42
CLN3-228ENST00000567804 PLA2G6O60733 806 aa17.7■□□□□ 0.42
CLN3-228ENST00000567804 C6orf222P0C671 652 aaPredicted RBP17.7■□□□□ 0.42
CLN3-228ENST00000567804 MCCP23508 829 aa17.7■□□□□ 0.42
CLN3-228ENST00000567804 EPHB4P54760 987 aa17.7■□□□□ 0.42
CLN3-228ENST00000567804 RRP1P56182 461 aaKnown RBP17.7■□□□□ 0.42
CLN3-228ENST00000567804 GJA9P57773 515 aa17.7■□□□□ 0.42
CLN3-228ENST00000567804 SMAD3P84022 425 aaKnown RBP17.7■□□□□ 0.42
CLN3-228ENST00000567804 CNTN2Q02246 1040 aa17.7■□□□□ 0.42
CLN3-228ENST00000567804 IKQ13123 557 aaPredicted RBP17.7■□□□□ 0.42
CLN3-228ENST00000567804 CCDC144CPQ8IYA2 1237 aa17.7■□□□□ 0.42
CLN3-228ENST00000567804 PCSK9Q8NBP7 692 aaKnown RBP17.7■□□□□ 0.42
CLN3-228ENST00000567804 CHMP4CQ96CF2 233 aa17.7■□□□□ 0.42
CLN3-228ENST00000567804 AGBL1Q96MI9 1066 aa17.7■□□□□ 0.42
CLN3-228ENST00000567804 GLT1D1Q96MS3 346 aa17.7■□□□□ 0.42
CLN3-228ENST00000567804 A1CFQ9NQ94 594 aaKnown RBP17.7■□□□□ 0.42
CLN3-228ENST00000567804 IL17RBQ9NRM6 502 aa17.7■□□□□ 0.42
CLN3-228ENST00000567804 RNF146Q9NTX7 359 aa17.7■□□□□ 0.42
CLN3-228ENST00000567804 ANAPC4Q9UJX5 808 aa17.7■□□□□ 0.42
CLN3-228ENST00000567804 STX8Q9UNK0 236 aa17.7■□□□□ 0.42
CLN3-228ENST00000567804 ELP1O95163 1332 aa17.7■□□□□ 0.42
CLN3-228ENST00000567804 NMT2O60551 498 aa17.69■□□□□ 0.42
CLN3-228ENST00000567804 ASGR1P07306 291 aa17.69■□□□□ 0.42
CLN3-228ENST00000567804 FPGSQ05932 587 aa17.69■□□□□ 0.42
CLN3-228ENST00000567804 VPS53Q5VIR6 699 aa17.69■□□□□ 0.42
CLN3-228ENST00000567804 KCTD1Q719H9 257 aa17.69■□□□□ 0.42
CLN3-228ENST00000567804 RASGRP2Q7LDG7 609 aa17.69■□□□□ 0.42
CLN3-228ENST00000567804 SPC25Q9HBM1 224 aa17.69■□□□□ 0.42
CLN3-228ENST00000567804 INCENPQ9NQS7 918 aa17.69■□□□□ 0.42
CLN3-228ENST00000567804 MROH7Q68CQ1 1323 aa17.69■□□□□ 0.42
CLN3-228ENST00000567804 EYSQ5T1H1 3165 aa17.68■□□□□ 0.42
CLN3-228ENST00000567804 TKFCQ3LXA3 575 aa17.68■□□□□ 0.42
CLN3-228ENST00000567804 ANKRD45Q5TZF3 282 aa17.68■□□□□ 0.42
CLN3-228ENST00000567804 RCSD1Q6JBY9 416 aa17.68■□□□□ 0.42
CLN3-228ENST00000567804 EVI5LQ96CN4 794 aa17.68■□□□□ 0.42
CLN3-228ENST00000567804 RNPC3Q96LT9 517 aaKnown RBP17.68■□□□□ 0.42
CLN3-228ENST00000567804 TRERF1Q96PN7 1200 aa17.68■□□□□ 0.42
CLN3-228ENST00000567804 SEMA6BQ9H3T3 888 aa17.68■□□□□ 0.42
CLN3-228ENST00000567804 ZBTB47Q9UFB7 747 aaPredicted RBP17.68■□□□□ 0.42
CLN3-228ENST00000567804 TBX21Q9UL17 535 aa17.68■□□□□ 0.42
CLN3-228ENST00000567804 LAMA4Q16363 1823 aa17.68■□□□□ 0.42
CLN3-228ENST00000567804 SOWAHBA6NEL2 793 aa17.67■□□□□ 0.42
CLN3-228ENST00000567804 CTAGE5O15320 804 aa17.67■□□□□ 0.42
CLN3-228ENST00000567804 ORC4O43929 436 aa17.67■□□□□ 0.42
CLN3-228ENST00000567804 RANBP6O60518 1105 aaKnown RBP17.67■□□□□ 0.42
CLN3-228ENST00000567804 ALAS1P13196 640 aa17.67■□□□□ 0.42
CLN3-228ENST00000567804 NOVP48745 357 aa17.67■□□□□ 0.42
CLN3-228ENST00000567804 CDK7P50613 346 aa17.67■□□□□ 0.42
CLN3-228ENST00000567804 NKX3-2P78367 333 aa17.67■□□□□ 0.42
CLN3-228ENST00000567804 CDX2Q99626 313 aaPredicted RBP17.67■□□□□ 0.42
CLN3-228ENST00000567804 TTYH1Q9H313 450 aaPredicted RBP17.67■□□□□ 0.42
CLN3-228ENST00000567804 HELLSQ9NRZ9 838 aa17.67■□□□□ 0.42
CLN3-228ENST00000567804 PRR12Q9ULL5 1215 aa17.67■□□□□ 0.42
CLN3-228ENST00000567804 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.66■□□□□ 0.42
CLN3-228ENST00000567804 ASB14A6NK59 587 aa17.66■□□□□ 0.42
CLN3-228ENST00000567804 TIMP1P01033 207 aa17.66■□□□□ 0.42
CLN3-228ENST00000567804 FGRP09769 529 aa17.66■□□□□ 0.42
CLN3-228ENST00000567804 PDE1AP54750 535 aa17.66■□□□□ 0.42
CLN3-228ENST00000567804 SNAP25P60880 206 aa17.66■□□□□ 0.42
CLN3-228ENST00000567804 ALX1Q15699 326 aa17.66■□□□□ 0.42
CLN3-228ENST00000567804 GNASQ5JWF2 1037 aa17.66■□□□□ 0.42
CLN3-228ENST00000567804 CCDC174Q6PII3 467 aa17.66■□□□□ 0.42
CLN3-228ENST00000567804 CRBNQ96SW2 442 aa17.66■□□□□ 0.42
CLN3-228ENST00000567804 GBF1Q92538 1859 aa17.66■□□□□ 0.42
CLN3-228ENST00000567804 ASTN1O14525 1302 aa17.66■□□□□ 0.42
CLN3-228ENST00000567804 A0A0U1RQG5 324 aaPredicted RBP17.65■□□□□ 0.42
CLN3-228ENST00000567804 ARVCFO00192 962 aa17.65■□□□□ 0.42
CLN3-228ENST00000567804 TNFAIP2Q03169 654 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms