RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 REPS2Q8NFH8 660 aa14.16□□□□□ -0.14
SF3B3-208ENST00000567250 MYL10Q9BUA6 226 aa14.16□□□□□ -0.14
SF3B3-208ENST00000567250 MOV10L1Q9BXT6 1211 aaKnown RBP14.16□□□□□ -0.14
SF3B3-208ENST00000567250 GPHNQ9NQX3 736 aaPredicted RBP14.16□□□□□ -0.14
SF3B3-208ENST00000567250 PDRG1Q9NUG6 133 aa14.16□□□□□ -0.14
SF3B3-208ENST00000567250 FBXO40Q9UH90 709 aa14.16□□□□□ -0.14
SF3B3-208ENST00000567250 NAP1L2Q9ULW6 460 aaPredicted RBP14.16□□□□□ -0.14
SF3B3-208ENST00000567250 NID2Q14112 1375 aa14.16□□□□□ -0.14
SF3B3-208ENST00000567250 CCDC196A0A1B0GTZ2 297 aa14.15□□□□□ -0.14
SF3B3-208ENST00000567250 GOLGA8AA7E2F4 631 aa14.15□□□□□ -0.14
SF3B3-208ENST00000567250 ABCB7O75027 752 aa14.15□□□□□ -0.14
SF3B3-208ENST00000567250 ICAM1P05362 532 aa14.15□□□□□ -0.14
SF3B3-208ENST00000567250 TRAF1Q13077 416 aa14.15□□□□□ -0.14
SF3B3-208ENST00000567250 TKFCQ3LXA3 575 aa14.15□□□□□ -0.14
SF3B3-208ENST00000567250 OTOP1Q7RTM1 612 aa14.15□□□□□ -0.14
SF3B3-208ENST00000567250 GPR142Q7Z601 462 aa14.15□□□□□ -0.14
SF3B3-208ENST00000567250 PLEKHH3Q7Z736 793 aa14.15□□□□□ -0.14
SF3B3-208ENST00000567250 NCAPG2Q86XI2 1143 aa14.15□□□□□ -0.14
SF3B3-208ENST00000567250 TRIM47Q96LD4 638 aa14.15□□□□□ -0.14
SF3B3-208ENST00000567250 BACH2Q9BYV9 841 aa14.15□□□□□ -0.14
SF3B3-208ENST00000567250 ARHGAP39Q9C0H5 1083 aa14.15□□□□□ -0.14
SF3B3-208ENST00000567250 PORCNQ9H237 461 aa14.15□□□□□ -0.14
SF3B3-208ENST00000567250 STRNO43815 780 aa14.14□□□□□ -0.15
SF3B3-208ENST00000567250 ERCC3P19447 782 aa14.14□□□□□ -0.15
SF3B3-208ENST00000567250 SMARCA1P28370 1054 aa14.14□□□□□ -0.15
SF3B3-208ENST00000567250 METAP2P50579 478 aaKnown RBP eCLIP14.14□□□□□ -0.15
SF3B3-208ENST00000567250 APOBRQ0VD83 1088 aa14.14□□□□□ -0.15
SF3B3-208ENST00000567250 CDC37Q16543 378 aaPredicted RBP14.14□□□□□ -0.15
SF3B3-208ENST00000567250 RTN1Q16799 776 aa14.14□□□□□ -0.15
SF3B3-208ENST00000567250 Q3C1V9 767 aa14.14□□□□□ -0.15
SF3B3-208ENST00000567250 CCDC174Q6PII3 467 aa14.14□□□□□ -0.15
SF3B3-208ENST00000567250 POTEEQ6S8J3 1075 aa14.14□□□□□ -0.15
SF3B3-208ENST00000567250 ADGRF4Q8IZF3 695 aa14.14□□□□□ -0.15
SF3B3-208ENST00000567250 STAG2Q8N3U4 1231 aa14.14□□□□□ -0.15
SF3B3-208ENST00000567250 FANCBQ8NB91 859 aa14.14□□□□□ -0.15
SF3B3-208ENST00000567250 CHST13Q8NET6 341 aa14.14□□□□□ -0.15
SF3B3-208ENST00000567250 NUDT12Q9BQG2 462 aa14.14□□□□□ -0.15
SF3B3-208ENST00000567250 SPZ1Q9BXG8 430 aa14.14□□□□□ -0.15
SF3B3-208ENST00000567250 UBA5Q9GZZ9 404 aa14.14□□□□□ -0.15
SF3B3-208ENST00000567250 ALDH8A1Q9H2A2 487 aaPredicted RBP14.14□□□□□ -0.15
SF3B3-208ENST00000567250 RAVER2Q9HCJ3 691 aaKnown RBP14.14□□□□□ -0.15
SF3B3-208ENST00000567250 SRRDQ9UH36 339 aa14.14□□□□□ -0.15
SF3B3-208ENST00000567250 CCPG1Q9ULG6 757 aa14.14□□□□□ -0.15
SF3B3-208ENST00000567250 DOCK3Q8IZD9 2030 aa14.14□□□□□ -0.15
SF3B3-208ENST00000567250 ZNFX1Q9P2E3 1918 aaKnown RBP14.13□□□□□ -0.15
SF3B3-208ENST00000567250 PEX10O60683 326 aa14.13□□□□□ -0.15
SF3B3-208ENST00000567250 ECM2O94769 699 aaPredicted RBP14.13□□□□□ -0.15
SF3B3-208ENST00000567250 RXRAP19793 462 aa14.13□□□□□ -0.15
SF3B3-208ENST00000567250 EVCP57679 992 aa14.13□□□□□ -0.15
SF3B3-208ENST00000567250 KCTD2Q14681 263 aa14.13□□□□□ -0.15
SF3B3-208ENST00000567250 FBXO46Q6PJ61 603 aaPredicted RBP14.13□□□□□ -0.15
SF3B3-208ENST00000567250 CCDC144CPQ8IYA2 1237 aa14.13□□□□□ -0.15
SF3B3-208ENST00000567250 ABRAQ8N0Z2 381 aa14.13□□□□□ -0.15
SF3B3-208ENST00000567250 TBC1D32Q96NH3 1257 aa14.13□□□□□ -0.15
SF3B3-208ENST00000567250 ACAD9Q9H845 621 aa14.13□□□□□ -0.15
SF3B3-208ENST00000567250 SLC5A4Q9NY91 659 aa14.13□□□□□ -0.15
SF3B3-208ENST00000567250 SEC63Q9UGP8 760 aaKnown RBP14.13□□□□□ -0.15
SF3B3-208ENST00000567250 BRPF3Q9ULD4 1205 aa14.13□□□□□ -0.15
SF3B3-208ENST00000567250 SLC15A5A6NIM6 579 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 ZBTB5O15062 677 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 FCER1AP12319 257 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 PTPREP23469 700 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 CTGFP29279 349 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 RGS2P41220 211 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 SLC4A3P48751 1232 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 NEK4P51957 841 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 PRKCZQ05513 592 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 TOB2Q14106 344 aaPredicted RBP14.12□□□□□ -0.15
SF3B3-208ENST00000567250 RABEP1Q15276 862 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 TMTC3Q6ZXV5 915 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.12□□□□□ -0.15
SF3B3-208ENST00000567250 RAB11FIP4Q86YS3 637 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 RAET1EQ8TD07 263 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 RRP36Q96EU6 259 aaKnown RBP14.12□□□□□ -0.15
SF3B3-208ENST00000567250 APBA2Q99767 749 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 CPVLQ9H3G5 476 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 RIOX1Q9H6W3 641 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 JMJD4Q9H9V9 463 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 RNF146Q9NTX7 359 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 PTPN22Q9Y2R2 807 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 PFASO15067 1338 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 ZNF536O15090 1300 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 ABCB11O95342 1321 aa14.12□□□□□ -0.15
SF3B3-208ENST00000567250 ALAS1P13196 640 aa14.11□□□□□ -0.15
SF3B3-208ENST00000567250 AK2P54819 239 aa14.11□□□□□ -0.15
SF3B3-208ENST00000567250 IRF5Q13568 498 aa14.11□□□□□ -0.15
SF3B3-208ENST00000567250 GRB14Q14449 540 aa14.11□□□□□ -0.15
SF3B3-208ENST00000567250 QRICH1Q2TAL8 776 aa14.11□□□□□ -0.15
SF3B3-208ENST00000567250 CPLX2Q6PUV4 134 aaKnown RBP14.11□□□□□ -0.15
SF3B3-208ENST00000567250 FBXO11Q86XK2 927 aa14.11□□□□□ -0.15
SF3B3-208ENST00000567250 HOMER1Q86YM7 354 aa14.11□□□□□ -0.15
SF3B3-208ENST00000567250 ZNF274Q96GC6 653 aaPredicted RBP14.11□□□□□ -0.15
SF3B3-208ENST00000567250 AGBL1Q96MI9 1066 aa14.11□□□□□ -0.15
SF3B3-208ENST00000567250 MMP19Q99542 508 aa14.11□□□□□ -0.15
SF3B3-208ENST00000567250 AMNQ9BXJ7 453 aa14.11□□□□□ -0.15
SF3B3-208ENST00000567250 VAT1LQ9HCJ6 419 aa14.11□□□□□ -0.15
SF3B3-208ENST00000567250 HOMER2Q9NSB8 354 aa14.11□□□□□ -0.15
SF3B3-208ENST00000567250 RBM27Q9P2N5 1060 aaKnown RBP14.11□□□□□ -0.15
SF3B3-208ENST00000567250 ST18O60284 1047 aa14.1□□□□□ -0.15
SF3B3-208ENST00000567250 PLEKHA8P1O95397 391 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms