RNA–Protein interactions for RNA: ENST00000566550.1

HERPUD1-211, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, human

TSL 2

Gene HERPUD1, Length 511 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HERPUD1-211	ENST00000566550	NXPE3	Q969Y0	559 aa		4.2	□□□□□ -1.74
HERPUD1-211	ENST00000566550	LRGUK	Q96M69	825 aa		4.2	□□□□□ -1.74
HERPUD1-211	ENST00000566550	AARSD1	Q9BTE6	412 aa	Known RBP	4.2	□□□□□ -1.74
HERPUD1-211	ENST00000566550	LGR4	Q9BXB1	951 aa		4.2	□□□□□ -1.74
HERPUD1-211	ENST00000566550	LDHAL6B	Q9BYZ2	381 aa	Predicted RBP	4.2	□□□□□ -1.74
HERPUD1-211	ENST00000566550	RHOBTB2	Q9BYZ6	727 aa		4.2	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ZC3H12C	Q9C0D7	883 aa	Known RBP	4.2	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ZNF700	Q9H0M5	742 aa		4.2	□□□□□ -1.74
HERPUD1-211	ENST00000566550	EPN3	Q9H201	632 aa		4.2	□□□□□ -1.74
HERPUD1-211	ENST00000566550	RASSF4	Q9H2L5	321 aa		4.2	□□□□□ -1.74
HERPUD1-211	ENST00000566550	OBP2A	Q9NY56	170 aa		4.2	□□□□□ -1.74
HERPUD1-211	ENST00000566550	MAP3K20	Q9NYL2	800 aa	Known RBP	4.2	□□□□□ -1.74
HERPUD1-211	ENST00000566550	CCDC39	Q9UFE4	941 aa		4.2	□□□□□ -1.74
HERPUD1-211	ENST00000566550	USP25	Q9UHP3	1055 aa		4.2	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PUF60	Q9UHX1	559 aa	Known RBP	4.2	□□□□□ -1.74
HERPUD1-211	ENST00000566550	TNPO3	Q9Y5L0	923 aa	Known RBP	4.2	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PHLDB1	Q86UU1	1377 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550		A0A1W2PQU0	124 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	RASSF10	A6NK89	507 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	MEIS3P2	A8K0S8	358 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	GABRD	O14764	452 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PRODH	O43272	600 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ATE1	O95260	518 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	WISP1	O95388	367 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	MT-CO1	P00395	513 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	FGA	P02671	866 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	MYBL2	P10244	700 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PYGM	P11217	842 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	HOXD8	P13378	290 aa	Predicted RBP	4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	FOSL1	P15407	271 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	RAG1	P15918	1043 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PTMS	P20962	102 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	CCND1	P24385	295 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ARNT	P27540	789 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PPM1F	P49593	454 aa	Predicted RBP	4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	HSP90AA2P	Q14568	343 aa	Predicted RBP	4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ACBD5	Q5T8D3	534 aa	Predicted RBP	4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	SYDE2	Q5VT97	1194 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	TDRD10	Q5VZ19	366 aa	Known RBP	4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	FDX2	Q6P4F2	183 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	KRBA2	Q6ZNG9	492 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	CBLL1	Q75N03	491 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	NLRC3	Q7RTR2	1065 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	IFNL3	Q8IZI9	196 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	GPATCH11	Q8N954	259 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	CEP120	Q8N960	986 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	TMEM102	Q8N9M5	508 aa	Predicted RBP	4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	GALNT11	Q8NCW6	608 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PI4K2B	Q8TCG2	481 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	MFSD14A	Q96MC6	490 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	SLC9A7	Q96T83	725 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	TTC1	Q99614	292 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	SENP7	Q9BQF6	1050 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	METTL22	Q9BUU2	404 aa	Predicted RBP	4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	MRPL4	Q9BYD3	311 aa	Known RBP	4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	CLEC4M	Q9H2X3	399 aa	Predicted RBP	4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ZHX3	Q9H4I2	956 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	OSGEP	Q9NPF4	335 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	REV1	Q9UBZ9	1251 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PCDHA4	Q9UN74	947 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	LZTS1	Q9Y250	596 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	TNKS	O95271	1327 aa		4.19	□□□□□ -1.74
HERPUD1-211	ENST00000566550	NEMP1	O14524	444 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	FSCN2	O14926	492 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	BRINP1	O60477	761 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	TCEA3	O75764	348 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PRNP	P04156	253 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	TP53	P04637	393 aa	Predicted RBP	4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	JMJD7	P0C870	316 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	NME1	P15531	152 aa	Known RBP	4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ITGB5	P18084	799 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PLCG1	P19174	1290 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	RXRB	P28702	533 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	POLR2B	P30876	1174 aa	Known RBP	4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	HOXA10	P31260	410 aa	Predicted RBP	4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	CABP4	P57796	275 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PPP2R2A	P63151	447 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	SUMO1	P63165	101 aa	Known RBP	4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PURA	Q00577	322 aa	Known RBP	4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	SKOR2	Q2VWA4	1001 aa	Predicted RBP	4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	CEP135	Q66GS9	1140 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	KIAA1211	Q6ZU35	1233 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	FGD2	Q7Z6J4	655 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	MORC1	Q86VD1	984 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	AMOTL1	Q8IY63	956 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ANKRD42	Q8N9B4	389 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	USP33	Q8TEY7	942 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	ATG4C	Q96DT6	458 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	EMILIN2	Q9BXX0	1053 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	LACRT	Q9GZZ8	138 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PUS7L	Q9H0K6	701 aa	Known RBP	4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	RNF208	Q9H0X6	261 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	PRDM11	Q9NQV5	511 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	INTS7	Q9NVH2	962 aa	Known RBP	4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	GMIP	Q9P107	970 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	SUCO	Q9UBS9	1254 aa	Known RBP	4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	RPS6KL1	Q9Y6S9	549 aa		4.18	□□□□□ -1.74
HERPUD1-211	ENST00000566550	BLACE	A4D250	179 aa		4.17	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms