RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 CTDSPL2Q05D32 466 aa20.3■□□□□ 0.84
CLN3-216ENST00000565316 ACVR2BQ13705 512 aa20.3■□□□□ 0.84
CLN3-216ENST00000565316 VPS53Q5VIR6 699 aa20.3■□□□□ 0.84
CLN3-216ENST00000565316 SLC17A8Q8NDX2 589 aa20.3■□□□□ 0.84
CLN3-216ENST00000565316 ABHD16BQ9H3Z7 469 aa20.3■□□□□ 0.84
CLN3-216ENST00000565316 HELLSQ9NRZ9 838 aa20.3■□□□□ 0.84
CLN3-216ENST00000565316 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.3■□□□□ 0.84
CLN3-216ENST00000565316 ZBTB47Q9UFB7 747 aaPredicted RBP20.3■□□□□ 0.84
CLN3-216ENST00000565316 ZHX1Q9UKY1 873 aaPredicted RBP20.3■□□□□ 0.84
CLN3-216ENST00000565316 MOXD2PA6NHM9 499 aa20.29■□□□□ 0.84
CLN3-216ENST00000565316 KIAA0355O15063 1070 aa20.29■□□□□ 0.84
CLN3-216ENST00000565316 ORC4O43929 436 aa20.29■□□□□ 0.84
CLN3-216ENST00000565316 MCCP23508 829 aa20.29■□□□□ 0.84
CLN3-216ENST00000565316 CST5P28325 142 aaPredicted RBP20.29■□□□□ 0.84
CLN3-216ENST00000565316 ACLYP53396 1101 aa20.29■□□□□ 0.84
CLN3-216ENST00000565316 SHHQ15465 462 aa20.29■□□□□ 0.84
CLN3-216ENST00000565316 ANKRD33Q7Z3H0 272 aa20.29■□□□□ 0.84
CLN3-216ENST00000565316 FAM133AQ8N9E0 248 aa20.29■□□□□ 0.84
CLN3-216ENST00000565316 TOX2Q96NM4 488 aa20.29■□□□□ 0.84
CLN3-216ENST00000565316 CUL9Q8IWT3 2517 aa20.29■□□□□ 0.84
CLN3-216ENST00000565316 TSPY2A6NKD2 308 aa20.28■□□□□ 0.84
CLN3-216ENST00000565316 NMT2O60551 498 aa20.28■□□□□ 0.84
CLN3-216ENST00000565316 CLTBP09497 229 aa20.28■□□□□ 0.84
CLN3-216ENST00000565316 ITGB8P26012 769 aa20.28■□□□□ 0.84
CLN3-216ENST00000565316 KCNA10Q16322 511 aa20.28■□□□□ 0.84
CLN3-216ENST00000565316 TKFCQ3LXA3 575 aa20.28■□□□□ 0.84
CLN3-216ENST00000565316 C9orf50Q5SZB4 431 aa20.28■□□□□ 0.84
CLN3-216ENST00000565316 RCSD1Q6JBY9 416 aa20.28■□□□□ 0.84
CLN3-216ENST00000565316 ARMCX2Q7L311 632 aa20.28■□□□□ 0.84
CLN3-216ENST00000565316 AGBL1Q96MI9 1066 aa20.28■□□□□ 0.84
CLN3-216ENST00000565316 KATNBL1Q9H079 304 aa20.28■□□□□ 0.84
CLN3-216ENST00000565316 UPF3AQ9H1J1 476 aaKnown RBP20.28■□□□□ 0.84
CLN3-216ENST00000565316 ACAD9Q9H845 621 aa20.28■□□□□ 0.84
CLN3-216ENST00000565316 STX8Q9UNK0 236 aa20.28■□□□□ 0.84
CLN3-216ENST00000565316 ADCY6O43306 1168 aa20.27■□□□□ 0.84
CLN3-216ENST00000565316 CNTN2Q02246 1040 aa20.27■□□□□ 0.84
CLN3-216ENST00000565316 CCDC144CPQ8IYA2 1237 aa20.27■□□□□ 0.84
CLN3-216ENST00000565316 NUP133Q8WUM0 1156 aa20.27■□□□□ 0.84
CLN3-216ENST00000565316 HOMER2Q9NSB8 354 aa20.27■□□□□ 0.84
CLN3-216ENST00000565316 MYADML2A6NDP7 307 aa20.27■□□□□ 0.83
CLN3-216ENST00000565316 PQBP1O60828 265 aaKnown RBP20.27■□□□□ 0.83
CLN3-216ENST00000565316 GJA9P57773 515 aa20.27■□□□□ 0.83
CLN3-216ENST00000565316 NKX3-2P78367 333 aa20.27■□□□□ 0.83
CLN3-216ENST00000565316 AAMPQ13685 434 aa20.27■□□□□ 0.83
CLN3-216ENST00000565316 CCDC144BQ3MJ40 725 aa20.27■□□□□ 0.83
CLN3-216ENST00000565316 KCTD1Q719H9 257 aa20.27■□□□□ 0.83
CLN3-216ENST00000565316 FAM227BQ96M60 508 aa20.27■□□□□ 0.83
CLN3-216ENST00000565316 A1CFQ9NQ94 594 aaKnown RBP20.27■□□□□ 0.83
CLN3-216ENST00000565316 STARD7Q9NQZ5 370 aa20.27■□□□□ 0.83
CLN3-216ENST00000565316 RNF146Q9NTX7 359 aa20.27■□□□□ 0.83
CLN3-216ENST00000565316 ELP1O95163 1332 aa20.26■□□□□ 0.83
CLN3-216ENST00000565316 A0A0D9SFI3 127 aa20.26■□□□□ 0.83
CLN3-216ENST00000565316 RANBP6O60518 1105 aaKnown RBP20.26■□□□□ 0.83
CLN3-216ENST00000565316 FGAP02671 866 aa20.26■□□□□ 0.83
CLN3-216ENST00000565316 FAAP100Q0VG06 881 aa20.26■□□□□ 0.83
CLN3-216ENST00000565316 IKQ13123 557 aaPredicted RBP20.26■□□□□ 0.83
CLN3-216ENST00000565316 MCMDC2Q4G0Z9 681 aa20.26■□□□□ 0.83
CLN3-216ENST00000565316 TRERF1Q96PN7 1200 aa20.26■□□□□ 0.83
CLN3-216ENST00000565316 PRR12Q9ULL5 1215 aa20.26■□□□□ 0.83
CLN3-216ENST00000565316 ISY1Q9ULR0 285 aaKnown RBP20.26■□□□□ 0.83
CLN3-216ENST00000565316 ZMYM6O95789 1325 aa20.25■□□□□ 0.83
CLN3-216ENST00000565316 SOWAHBA6NEL2 793 aa20.25■□□□□ 0.83
CLN3-216ENST00000565316 CDK7P50613 346 aa20.25■□□□□ 0.83
CLN3-216ENST00000565316 IRX5P78411 483 aaPredicted RBP20.25■□□□□ 0.83
CLN3-216ENST00000565316 PCSK9Q8NBP7 692 aaKnown RBP20.25■□□□□ 0.83
CLN3-216ENST00000565316 DCAF4Q8WV16 495 aa20.25■□□□□ 0.83
CLN3-216ENST00000565316 GUCD1Q96NT3 240 aa20.25■□□□□ 0.83
CLN3-216ENST00000565316 SPC25Q9HBM1 224 aa20.25■□□□□ 0.83
CLN3-216ENST00000565316 TCP11L1Q9NUJ3 509 aa20.25■□□□□ 0.83
CLN3-216ENST00000565316 TMEM39AQ9NV64 488 aa20.25■□□□□ 0.83
CLN3-216ENST00000565316 ASB14A6NK59 587 aa20.24■□□□□ 0.83
CLN3-216ENST00000565316 DCDC2CA8MYV0 355 aa20.24■□□□□ 0.83
CLN3-216ENST00000565316 CTAGE5O15320 804 aa20.24■□□□□ 0.83
CLN3-216ENST00000565316 C6orf222P0C671 652 aaPredicted RBP20.24■□□□□ 0.83
CLN3-216ENST00000565316 RAG1P15918 1043 aa20.24■□□□□ 0.83
CLN3-216ENST00000565316 BTNL9Q6UXG8 535 aa20.24■□□□□ 0.83
CLN3-216ENST00000565316 RASGRP2Q7LDG7 609 aa20.24■□□□□ 0.83
CLN3-216ENST00000565316 CHMP4CQ96CF2 233 aa20.24■□□□□ 0.83
CLN3-216ENST00000565316 ASGR1P07306 291 aa20.23■□□□□ 0.83
CLN3-216ENST00000565316 HSPD1P10809 573 aaKnown RBP20.23■□□□□ 0.83
CLN3-216ENST00000565316 ALAS1P13196 640 aa20.23■□□□□ 0.83
CLN3-216ENST00000565316 EPHB4P54760 987 aa20.23■□□□□ 0.83
CLN3-216ENST00000565316 SNAP25P60880 206 aa20.23■□□□□ 0.83
CLN3-216ENST00000565316 SMAD3P84022 425 aaKnown RBP20.23■□□□□ 0.83
CLN3-216ENST00000565316 CCDC174Q6PII3 467 aa20.23■□□□□ 0.83
CLN3-216ENST00000565316 SMC5Q8IY18 1101 aa20.23■□□□□ 0.83
CLN3-216ENST00000565316 GLT1D1Q96MS3 346 aa20.23■□□□□ 0.83
CLN3-216ENST00000565316 TBX21Q9UL17 535 aa20.23■□□□□ 0.83
CLN3-216ENST00000565316 ASTN1O14525 1302 aa20.22■□□□□ 0.83
CLN3-216ENST00000565316 MCM3APO60318 1980 aa20.22■□□□□ 0.83
CLN3-216ENST00000565316 ICAM1P05362 532 aa20.22■□□□□ 0.83
CLN3-216ENST00000565316 TOP1P11387 765 aaKnown RBP20.22■□□□□ 0.83
CLN3-216ENST00000565316 NMIQ13287 307 aaPredicted RBP20.22■□□□□ 0.83
CLN3-216ENST00000565316 MUM1L1Q5H9M0 696 aa20.22■□□□□ 0.83
CLN3-216ENST00000565316 GNASQ5JWF2 1037 aa20.22■□□□□ 0.83
CLN3-216ENST00000565316 ZNF589Q86UQ0 364 aaPredicted RBP20.22■□□□□ 0.83
CLN3-216ENST00000565316 TMEM47Q9BQJ4 181 aa20.22■□□□□ 0.83
CLN3-216ENST00000565316 RANBP17Q9H2T7 1088 aaKnown RBP20.22■□□□□ 0.83
CLN3-216ENST00000565316 CYP39A1Q9NYL5 469 aa20.22■□□□□ 0.83
CLN3-216ENST00000565316 MROH7Q68CQ1 1323 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms