RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CCDC129Q6ZRS4 1044 aa20.05■□□□□ 0.8
CLN3-211ENST00000564091 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.05■□□□□ 0.8
CLN3-211ENST00000564091 ANKRD33Q7Z3H0 272 aa20.05■□□□□ 0.8
CLN3-211ENST00000564091 RNPC3Q96LT9 517 aaKnown RBP20.05■□□□□ 0.8
CLN3-211ENST00000564091 TTYH1Q9H313 450 aaPredicted RBP20.05■□□□□ 0.8
CLN3-211ENST00000564091 DCDC2CA8MYV0 355 aa20.04■□□□□ 0.8
CLN3-211ENST00000564091 MCCP23508 829 aa20.04■□□□□ 0.8
CLN3-211ENST00000564091 CNTN2Q02246 1040 aa20.04■□□□□ 0.8
CLN3-211ENST00000564091 ARMCX2Q7L311 632 aa20.04■□□□□ 0.8
CLN3-211ENST00000564091 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.04■□□□□ 0.8
CLN3-211ENST00000564091 AGBL1Q96MI9 1066 aa20.04■□□□□ 0.8
CLN3-211ENST00000564091 TOX2Q96NM4 488 aa20.04■□□□□ 0.8
CLN3-211ENST00000564091 ABHD16BQ9H3Z7 469 aa20.04■□□□□ 0.8
CLN3-211ENST00000564091 FOXP2O15409 715 aa20.03■□□□□ 0.8
CLN3-211ENST00000564091 SLC1A4P43007 532 aa20.03■□□□□ 0.8
CLN3-211ENST00000564091 STAT2P52630 851 aa20.03■□□□□ 0.8
CLN3-211ENST00000564091 FPGSQ05932 587 aa20.03■□□□□ 0.8
CLN3-211ENST00000564091 IKQ13123 557 aaPredicted RBP20.03■□□□□ 0.8
CLN3-211ENST00000564091 CCDC144CPQ8IYA2 1237 aa20.03■□□□□ 0.8
CLN3-211ENST00000564091 VTI1AQ96AJ9 217 aa20.03■□□□□ 0.8
CLN3-211ENST00000564091 GLT1D1Q96MS3 346 aa20.03■□□□□ 0.8
CLN3-211ENST00000564091 PLIN4Q96Q06 1357 aa20.03■□□□□ 0.8
CLN3-211ENST00000564091 NMT2O60551 498 aa20.02■□□□□ 0.8
CLN3-211ENST00000564091 ASGR1P07306 291 aa20.02■□□□□ 0.8
CLN3-211ENST00000564091 MX1P20591 662 aa20.02■□□□□ 0.8
CLN3-211ENST00000564091 CST5P28325 142 aaPredicted RBP20.02■□□□□ 0.8
CLN3-211ENST00000564091 SNAP25P60880 206 aa20.02■□□□□ 0.8
CLN3-211ENST00000564091 CTDSPL2Q05D32 466 aa20.02■□□□□ 0.8
CLN3-211ENST00000564091 GNASQ5JWF2 1037 aa20.02■□□□□ 0.8
CLN3-211ENST00000564091 KCTD1Q719H9 257 aa20.02■□□□□ 0.8
CLN3-211ENST00000564091 RASGRP2Q7LDG7 609 aa20.02■□□□□ 0.8
CLN3-211ENST00000564091 CHURC1Q8WUH1 139 aa20.02■□□□□ 0.8
CLN3-211ENST00000564091 STAG1Q8WVM7 1258 aa20.02■□□□□ 0.8
CLN3-211ENST00000564091 MYLIPQ8WY64 445 aa20.02■□□□□ 0.8
CLN3-211ENST00000564091 GMCL1Q96IK5 515 aa20.02■□□□□ 0.8
CLN3-211ENST00000564091 KATNBL1Q9H079 304 aa20.02■□□□□ 0.8
CLN3-211ENST00000564091 ACAD9Q9H845 621 aa20.02■□□□□ 0.8
CLN3-211ENST00000564091 SPC25Q9HBM1 224 aa20.02■□□□□ 0.8
CLN3-211ENST00000564091 A1CFQ9NQ94 594 aaKnown RBP20.02■□□□□ 0.8
CLN3-211ENST00000564091 RNF146Q9NTX7 359 aa20.02■□□□□ 0.8
CLN3-211ENST00000564091 STX8Q9UNK0 236 aa20.02■□□□□ 0.8
CLN3-211ENST00000564091 DDX49Q9Y6V7 483 aaKnown RBP20.02■□□□□ 0.8
CLN3-211ENST00000564091 ZNF536O15090 1300 aa20.02■□□□□ 0.79
CLN3-211ENST00000564091 FDX1P10109 184 aa20.01■□□□□ 0.79
CLN3-211ENST00000564091 CDK7P50613 346 aa20.01■□□□□ 0.79
CLN3-211ENST00000564091 GJA9P57773 515 aa20.01■□□□□ 0.79
CLN3-211ENST00000564091 VPS53Q5VIR6 699 aa20.01■□□□□ 0.79
CLN3-211ENST00000564091 CCDC174Q6PII3 467 aa20.01■□□□□ 0.79
CLN3-211ENST00000564091 FAM160B2Q86V87 743 aa20.01■□□□□ 0.79
CLN3-211ENST00000564091 FAM133AQ8N9E0 248 aa20.01■□□□□ 0.79
CLN3-211ENST00000564091 PCSK9Q8NBP7 692 aaKnown RBP20.01■□□□□ 0.79
CLN3-211ENST00000564091 COL25A1Q9BXS0 654 aaPredicted RBP20.01■□□□□ 0.79
CLN3-211ENST00000564091 UPF3AQ9H1J1 476 aaKnown RBP20.01■□□□□ 0.79
CLN3-211ENST00000564091 IL17RBQ9NRM6 502 aa20.01■□□□□ 0.79
CLN3-211ENST00000564091 TBX21Q9UL17 535 aa20.01■□□□□ 0.79
CLN3-211ENST00000564091 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.01■□□□□ 0.79
CLN3-211ENST00000564091 SMCHD1A6NHR9 2005 aa20.01■□□□□ 0.79
CLN3-211ENST00000564091 ELP1O95163 1332 aa20.01■□□□□ 0.79
CLN3-211ENST00000564091 GREB1LQ9C091 1923 aaPredicted RBP20■□□□□ 0.79
CLN3-211ENST00000564091 PRUNE2Q8WUY3 3088 aa20■□□□□ 0.79
CLN3-211ENST00000564091 PARP14Q460N5 1801 aa20■□□□□ 0.79
CLN3-211ENST00000564091 C11orf97A0A1B0GVM6 126 aaPredicted RBP20■□□□□ 0.79
CLN3-211ENST00000564091 SOWAHBA6NEL2 793 aa20■□□□□ 0.79
CLN3-211ENST00000564091 TSPY2A6NKD2 308 aa20■□□□□ 0.79
CLN3-211ENST00000564091 TIMP1P01033 207 aa20■□□□□ 0.79
CLN3-211ENST00000564091 TRERF1Q96PN7 1200 aa20■□□□□ 0.79
CLN3-211ENST00000564091 MTMR7Q9Y216 660 aa20■□□□□ 0.79
CLN3-211ENST00000564091 MYH8P13535 1937 aa20■□□□□ 0.79
CLN3-211ENST00000564091 CTAGE5O15320 804 aa19.99■□□□□ 0.79
CLN3-211ENST00000564091 ALAS1P13196 640 aa19.99■□□□□ 0.79
CLN3-211ENST00000564091 PTGS1P23219 599 aa19.99■□□□□ 0.79
CLN3-211ENST00000564091 BEX3Q00994 111 aa19.99■□□□□ 0.79
CLN3-211ENST00000564091 RCSD1Q6JBY9 416 aa19.99■□□□□ 0.79
CLN3-211ENST00000564091 NOL8Q76FK4 1167 aaKnown RBP19.99■□□□□ 0.79
CLN3-211ENST00000564091 MAFAQ8NHW3 353 aaPredicted RBP19.99■□□□□ 0.79
CLN3-211ENST00000564091 LTBP2Q14767 1821 aa19.99■□□□□ 0.79
CLN3-211ENST00000564091 COL11A1P12107 1806 aaPredicted RBP19.98■□□□□ 0.79
CLN3-211ENST00000564091 ARVCFO00192 962 aa19.98■□□□□ 0.79
CLN3-211ENST00000564091 RANBP6O60518 1105 aaKnown RBP19.98■□□□□ 0.79
CLN3-211ENST00000564091 TNFAIP2Q03169 654 aa19.98■□□□□ 0.79
CLN3-211ENST00000564091 ANKRD45Q5TZF3 282 aa19.98■□□□□ 0.79
CLN3-211ENST00000564091 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.98■□□□□ 0.793e-6■□□□□ 10.1
CLN3-211ENST00000564091 PRR12Q9ULL5 1215 aa19.98■□□□□ 0.79
CLN3-211ENST00000564091 SALL3Q9BXA9 1300 aa19.98■□□□□ 0.79
CLN3-211ENST00000564091 A0A0U1RQG5 324 aaPredicted RBP19.97■□□□□ 0.79
CLN3-211ENST00000564091 PLA2G6O60733 806 aa19.97■□□□□ 0.79
CLN3-211ENST00000564091 TKFCQ3LXA3 575 aa19.97■□□□□ 0.79
CLN3-211ENST00000564091 MUM1L1Q5H9M0 696 aa19.97■□□□□ 0.79
CLN3-211ENST00000564091 PPP4R3BQ5MIZ7 849 aa19.97■□□□□ 0.79
CLN3-211ENST00000564091 MFSD5Q6N075 450 aa19.97■□□□□ 0.79
CLN3-211ENST00000564091 C16orf59Q7L2K0 433 aa19.97■□□□□ 0.79
CLN3-211ENST00000564091 ASTN1O14525 1302 aa19.97■□□□□ 0.79
CLN3-211ENST00000564091 MROH7Q68CQ1 1323 aa19.97■□□□□ 0.79
CLN3-211ENST00000564091 MYH7P12883 1935 aa19.96■□□□□ 0.79
CLN3-211ENST00000564091 SPTBN5Q9NRC6 3674 aaKnown RBP19.96■□□□□ 0.79
CLN3-211ENST00000564091 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.96■□□□□ 0.79
CLN3-211ENST00000564091 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.96■□□□□ 0.79
CLN3-211ENST00000564091 ASB14A6NK59 587 aa19.96■□□□□ 0.79
CLN3-211ENST00000564091 FOSL2P15408 326 aa19.96■□□□□ 0.79
CLN3-211ENST00000564091 CXCL17Q6UXB2 119 aa19.96■□□□□ 0.79
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