RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 GPCPD1Q9NPB8 672 aa15.69■□□□□ 0.1
CLK3-213ENST00000563842 ANO2Q9NQ90 1003 aa15.69■□□□□ 0.1
CLK3-213ENST00000563842 FRMPD2Q68DX3 1309 aaPredicted RBP15.68■□□□□ 0.1
CLK3-213ENST00000563842 MCM3APO60318 1980 aa15.68■□□□□ 0.1
CLK3-213ENST00000563842 ASPRV1Q53RT3 343 aa15.68■□□□□ 0.1
CLK3-213ENST00000563842 RNF20Q5VTR2 975 aa15.68■□□□□ 0.1
CLK3-213ENST00000563842 ANKRD35Q8N283 1001 aa15.68■□□□□ 0.1
CLK3-213ENST00000563842 SHISA4Q96DD7 197 aa15.68■□□□□ 0.1
CLK3-213ENST00000563842 MAML3Q96JK9 1138 aa15.68■□□□□ 0.1
CLK3-213ENST00000563842 RANBP17Q9H2T7 1088 aaKnown RBP15.68■□□□□ 0.1
CLK3-213ENST00000563842 ACAD9Q9H845 621 aa15.68■□□□□ 0.1
CLK3-213ENST00000563842 FLRT1Q9NZU1 646 aa15.68■□□□□ 0.1
CLK3-213ENST00000563842 RIPK3Q9Y572 518 aa15.68■□□□□ 0.1
CLK3-213ENST00000563842 ZNF792Q3KQV3 632 aa15.67■□□□□ 0.1
CLK3-213ENST00000563842 TTBK2Q6IQ55 1244 aa15.67■□□□□ 0.1
CLK3-213ENST00000563842 CCDC174Q6PII3 467 aa15.67■□□□□ 0.1
CLK3-213ENST00000563842 MSL3Q8N5Y2 521 aaKnown RBP15.67■□□□□ 0.1
CLK3-213ENST00000563842 NRBP1Q9UHY1 535 aa15.67■□□□□ 0.1
CLK3-213ENST00000563842 ZNF536O15090 1300 aa15.67■□□□□ 0.1
CLK3-213ENST00000563842 IFIT3O14879 490 aaKnown RBP15.66■□□□□ 0.1
CLK3-213ENST00000563842 FARP2O94887 1054 aaPredicted RBP15.66■□□□□ 0.1
CLK3-213ENST00000563842 ICAM1P05362 532 aa15.66■□□□□ 0.1
CLK3-213ENST00000563842 PGK2P07205 417 aa15.66■□□□□ 0.1
CLK3-213ENST00000563842 ALAS1P13196 640 aa15.66■□□□□ 0.1
CLK3-213ENST00000563842 CNGA1P29973 690 aa15.66■□□□□ 0.1
CLK3-213ENST00000563842 CCND3P30281 292 aaPredicted RBP15.66■□□□□ 0.1
CLK3-213ENST00000563842 CYP2C19P33261 490 aa15.66■□□□□ 0.1
CLK3-213ENST00000563842 SLC16A2P36021 539 aa15.66■□□□□ 0.1
CLK3-213ENST00000563842 SEC23AQ15436 765 aa15.66■□□□□ 0.1
CLK3-213ENST00000563842 CYB5R4Q7L1T6 521 aa15.66■□□□□ 0.1
CLK3-213ENST00000563842 RASGRP2Q7LDG7 609 aa15.66■□□□□ 0.1
CLK3-213ENST00000563842 AGBL1Q96MI9 1066 aa15.66■□□□□ 0.1
CLK3-213ENST00000563842 TRERF1Q96PN7 1200 aa15.66■□□□□ 0.1
CLK3-213ENST00000563842 TINF2Q9BSI4 451 aa15.66■□□□□ 0.1
CLK3-213ENST00000563842 MTA3Q9BTC8 594 aa15.66■□□□□ 0.1
CLK3-213ENST00000563842 HTATIP2Q9BUP3 242 aa15.66■□□□□ 0.1
CLK3-213ENST00000563842 HOMER2Q9NSB8 354 aa15.66■□□□□ 0.1
CLK3-213ENST00000563842 RNF146Q9NTX7 359 aa15.66■□□□□ 0.1
CLK3-213ENST00000563842 CCPG1Q9ULG6 757 aa15.66■□□□□ 0.1
CLK3-213ENST00000563842 BRCA2P51587 3418 aa15.66■□□□□ 0.1
CLK3-213ENST00000563842 PFASO15067 1338 aa15.66■□□□□ 0.1
CLK3-213ENST00000563842 DNAJC25-GNG10A0A024R161 153 aa15.65■□□□□ 0.1
CLK3-213ENST00000563842 IGHA2P01877 340 aa15.65■□□□□ 0.1
CLK3-213ENST00000563842 PARP1P09874 1014 aaKnown RBP15.65■□□□□ 0.1
CLK3-213ENST00000563842 WTAPQ15007 396 aa15.65■□□□□ 0.1
CLK3-213ENST00000563842 NECTIN1Q15223 517 aa15.65■□□□□ 0.1
CLK3-213ENST00000563842 ZNF467Q7Z7K2 595 aaPredicted RBP15.65■□□□□ 0.1
CLK3-213ENST00000563842 OGDHLQ9ULD0 1010 aa15.65■□□□□ 0.1
CLK3-213ENST00000563842 SLC27A2O14975 620 aa15.64■□□□□ 0.09
CLK3-213ENST00000563842 CYBAP13498 195 aa15.64■□□□□ 0.09
CLK3-213ENST00000563842 MCM5P33992 734 aa15.64■□□□□ 0.09
CLK3-213ENST00000563842 HABP4Q5JVS0 413 aaKnown RBP15.64■□□□□ 0.09
CLK3-213ENST00000563842 CREB3L3Q68CJ9 461 aa15.64■□□□□ 0.09
CLK3-213ENST00000563842 NECAB2Q7Z6G3 386 aa15.64■□□□□ 0.09
CLK3-213ENST00000563842 TMTC2Q8N394 836 aa15.64■□□□□ 0.09
CLK3-213ENST00000563842 DDX20Q9UHI6 824 aaKnown RBP15.64■□□□□ 0.09
CLK3-213ENST00000563842 BAZ2BQ9UIF8 2168 aaKnown RBP15.64■□□□□ 0.09
CLK3-213ENST00000563842 CNPY2Q9Y2B0 182 aa15.64■□□□□ 0.09
CLK3-213ENST00000563842 WDR19Q8NEZ3 1342 aa15.64■□□□□ 0.09
CLK3-213ENST00000563842 SYNGAP1Q96PV0 1343 aa15.64■□□□□ 0.09
CLK3-213ENST00000563842 POTEB2H3BUK9 544 aa15.63■□□□□ 0.09
CLK3-213ENST00000563842 SEPT4O43236 478 aa15.63■□□□□ 0.09
CLK3-213ENST00000563842 GOLGA8HP0CJ92 632 aa15.63■□□□□ 0.09
CLK3-213ENST00000563842 SNAP25P60880 206 aa15.63■□□□□ 0.09
CLK3-213ENST00000563842 TMEM67Q5HYA8 995 aa15.63■□□□□ 0.09
CLK3-213ENST00000563842 LHX8Q68G74 356 aa15.63■□□□□ 0.09
CLK3-213ENST00000563842 MAMDC4Q6UXC1 1216 aa15.63■□□□□ 0.09
CLK3-213ENST00000563842 STOX1Q6ZVD7 989 aa15.63■□□□□ 0.09
CLK3-213ENST00000563842 UBE2Q1Q7Z7E8 422 aa15.63■□□□□ 0.09
CLK3-213ENST00000563842 CATIPQ7Z7H3 387 aa15.63■□□□□ 0.09
CLK3-213ENST00000563842 MB21D2Q8IYB1 491 aaPredicted RBP15.63■□□□□ 0.09
CLK3-213ENST00000563842 TMEM87BQ96K49 555 aa15.63■□□□□ 0.09
CLK3-213ENST00000563842 DHX16O60231 1041 aaKnown RBP15.62■□□□□ 0.09
CLK3-213ENST00000563842 UBA5Q9GZZ9 404 aa15.62■□□□□ 0.09
CLK3-213ENST00000563842 MAF1Q9H063 256 aa15.62■□□□□ 0.09
CLK3-213ENST00000563842 A1CFQ9NQ94 594 aaKnown RBP15.62■□□□□ 0.09
CLK3-213ENST00000563842 TAF6LQ9Y6J9 622 aa15.62■□□□□ 0.09
CLK3-213ENST00000563842 REC8O95072 547 aa15.61■□□□□ 0.09
CLK3-213ENST00000563842 TRAF1Q13077 416 aa15.61■□□□□ 0.09
CLK3-213ENST00000563842 KRT32Q14532 448 aa15.61■□□□□ 0.09
CLK3-213ENST00000563842 CHST3Q7LGC8 479 aa15.61■□□□□ 0.09
CLK3-213ENST00000563842 ADGRF4Q8IZF3 695 aa15.61■□□□□ 0.09
CLK3-213ENST00000563842 FAM133AQ8N9E0 248 aa15.61■□□□□ 0.09
CLK3-213ENST00000563842 ARRDC4Q8NCT1 418 aa15.61■□□□□ 0.09
CLK3-213ENST00000563842 TRPV1Q8NER1 839 aa15.61■□□□□ 0.09
CLK3-213ENST00000563842 IGDCC4Q8TDY8 1250 aa15.61■□□□□ 0.09
CLK3-213ENST00000563842 PAWRQ96IZ0 340 aaKnown RBP15.61■□□□□ 0.09
CLK3-213ENST00000563842 ASB14A6NK59 587 aa15.6■□□□□ 0.09
CLK3-213ENST00000563842 KLRF2D3W0D1 207 aa15.6■□□□□ 0.09
CLK3-213ENST00000563842 PRC1O43663 620 aa15.6■□□□□ 0.09
CLK3-213ENST00000563842 ANTXR2P58335 489 aa15.6■□□□□ 0.09
CLK3-213ENST00000563842 GRM4Q14833 912 aa15.6■□□□□ 0.09
CLK3-213ENST00000563842 CDC37Q16543 378 aaPredicted RBP15.6■□□□□ 0.09
CLK3-213ENST00000563842 TSGA10IPQ3SY00 556 aa15.6■□□□□ 0.09
CLK3-213ENST00000563842 MUM1L1Q5H9M0 696 aa15.6■□□□□ 0.09
CLK3-213ENST00000563842 PRAMEF19Q5SWL8 479 aa15.6■□□□□ 0.09
CLK3-213ENST00000563842 NSMFQ6X4W1 530 aa15.6■□□□□ 0.09
CLK3-213ENST00000563842 DPF3Q92784 378 aa15.6■□□□□ 0.09
CLK3-213ENST00000563842 MAP3K14Q99558 947 aa15.6■□□□□ 0.09
CLK3-213ENST00000563842 ABHD16BQ9H3Z7 469 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms