RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 ZSCAN23Q3MJ62 389 aa10.27□□□□□ -0.77
VPS39-207ENST00000563692 CERKLQ49MI3 558 aaPredicted RBP10.27□□□□□ -0.77
VPS39-207ENST00000563692 MYSM1Q5VVJ2 828 aa10.27□□□□□ -0.77
VPS39-207ENST00000563692 CCDC84Q86UT8 332 aaPredicted RBP10.27□□□□□ -0.77
VPS39-207ENST00000563692 METTL16Q86W50 562 aaKnown RBP10.27□□□□□ -0.77
VPS39-207ENST00000563692 FAM177A1Q8N128 213 aaPredicted RBP10.27□□□□□ -0.77
VPS39-207ENST00000563692 CMTR1Q8N1G2 835 aaKnown RBP10.27□□□□□ -0.77
VPS39-207ENST00000563692 SRBD1Q8N5C6 995 aaKnown RBP10.27□□□□□ -0.77
VPS39-207ENST00000563692 RAET1EQ8TD07 263 aa10.27□□□□□ -0.77
VPS39-207ENST00000563692 KCNG4Q8TDN1 519 aa10.27□□□□□ -0.77
VPS39-207ENST00000563692 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.27□□□□□ -0.77
VPS39-207ENST00000563692 ARHGAP39Q9C0H5 1083 aa10.27□□□□□ -0.77
VPS39-207ENST00000563692 MTMR4Q9NYA4 1195 aa10.27□□□□□ -0.77
VPS39-207ENST00000563692 PTCH2Q9Y6C5 1203 aa10.27□□□□□ -0.77
VPS39-207ENST00000563692 NAV1Q8NEY1 1877 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 PALM3A6NDB9 673 aaPredicted RBP10.26□□□□□ -0.77
VPS39-207ENST00000563692 C19orf81C9J6K1 198 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 PLEKHA8P1O95397 391 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 YEATS4O95619 227 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 BCRP11274 1271 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 IRX3P78415 501 aaPredicted RBP10.26□□□□□ -0.77
VPS39-207ENST00000563692 CEBPZQ03701 1054 aaKnown RBP10.26□□□□□ -0.77
VPS39-207ENST00000563692 FUT2Q10981 343 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 MTMR2Q13614 643 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 CCDC183Q5T5S1 534 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 CEP95Q96GE4 821 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 AIFM3Q96NN9 605 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 USP28Q96RU2 1077 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 FEZ1Q99689 392 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 WDR18Q9BV38 432 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 CABP5Q9NP86 173 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 SH3GLB2Q9NR46 395 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 POLR3EQ9NVU0 708 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 CLIP2Q9UDT6 1046 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 SRRDQ9UH36 339 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 ZBTB21Q9ULJ3 1066 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 MYPNQ86TC9 1320 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 ADGRA2Q96PE1 1338 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 PLIN4Q96Q06 1357 aa10.26□□□□□ -0.77
VPS39-207ENST00000563692 IGKV6D-41A0A0C4DH26 115 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 USP17L10C9JJH3 530 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 KLRF2D3W0D1 207 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 TNPO2O14787 897 aaKnown RBP10.25□□□□□ -0.77
VPS39-207ENST00000563692 GDF11O95390 407 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 SCG2P13521 617 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 AKR1B1P15121 316 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 CALML3P27482 149 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 GUCY1A2P33402 732 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 SHMT1P34896 483 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 KRT2P35908 639 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 ME1P48163 572 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 GCLCP48506 637 aaPredicted RBP10.25□□□□□ -0.77
VPS39-207ENST00000563692 MRE11P49959 708 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 BACE1P56817 501 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 RRP1BQ14684 758 aaKnown RBP10.25□□□□□ -0.77
VPS39-207ENST00000563692 PKN1Q16512 942 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 PFKFB3Q16875 520 aaPredicted RBP10.25□□□□□ -0.77
VPS39-207ENST00000563692 TPRNQ4KMQ1 711 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 RILPL1Q5EBL4 403 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 TREML2Q5T2D2 321 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 ANO1Q5XXA6 986 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 TATDN1Q6P1N9 297 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 NOSTRINQ8IVI9 506 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 DIS3L2Q8IYB7 885 aaKnown RBP10.25□□□□□ -0.77
VPS39-207ENST00000563692 ANKRD13CQ8N6S4 541 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 BICD2Q8TD16 824 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 ZNF333Q96JL9 665 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 TRIM47Q96LD4 638 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 DNAJC18Q9H819 358 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 KANSL2Q9H9L4 492 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 GJB4Q9NTQ9 266 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 BIN2Q9UBW5 565 aaPredicted RBP10.25□□□□□ -0.77
VPS39-207ENST00000563692 MAD2L2Q9UI95 211 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 CEP131Q9UPN4 1083 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 DOCK1Q14185 1865 aa10.25□□□□□ -0.77
VPS39-207ENST00000563692 BTBD18B2RXH4 712 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 SPTLC2O15270 562 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 MYCP01106 439 aaPredicted RBP10.24□□□□□ -0.77
VPS39-207ENST00000563692 GH2P01242 217 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 NASPP49321 788 aaPredicted RBP10.24□□□□□ -0.77
VPS39-207ENST00000563692 NLRP5P59047 1200 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 CAP1Q01518 475 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 FAM110CQ1W6H9 321 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 ABCB5Q2M3G0 1257 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 ASPRV1Q53RT3 343 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 SH3D19Q5HYK7 790 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 ADALQ6DHV7 355 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 GALNT17Q6IS24 598 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 TMEM179Q6ZVK1 233 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 CCAR1Q8IX12 1150 aaKnown RBP10.24□□□□□ -0.77
VPS39-207ENST00000563692 LINC00301Q8NCQ3 95 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 CCDC148Q8NFR7 591 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 CCDC12Q8WUD4 166 aaPredicted RBP10.24□□□□□ -0.77
VPS39-207ENST00000563692 MKL1Q969V6 931 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 COA7Q96BR5 231 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 RRP36Q96EU6 259 aaKnown RBP10.24□□□□□ -0.77
VPS39-207ENST00000563692 PHF20Q9BVI0 1012 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 SPZ1Q9BXG8 430 aa10.24□□□□□ -0.77
VPS39-207ENST00000563692 DDX19AQ9NUU7 478 aaKnown RBP10.24□□□□□ -0.77
VPS39-207ENST00000563692 TMEM63CQ9P1W3 806 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms