RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 BLIDQ8IZY5 108 aa11.69□□□□□ -0.54
SMG1-208ENST00000563448 DAGLBQ8NCG7 672 aa11.69□□□□□ -0.54
SMG1-208ENST00000563448 CCDC12Q8WUD4 166 aaPredicted RBP11.69□□□□□ -0.54
SMG1-208ENST00000563448 OPTNQ96CV9 577 aa11.69□□□□□ -0.54
SMG1-208ENST00000563448 SLF1Q9BQI6 1058 aa11.69□□□□□ -0.54
SMG1-208ENST00000563448 TANGO6Q9C0B7 1094 aa11.69□□□□□ -0.54
SMG1-208ENST00000563448 GPBP1L1Q9HC44 474 aaPredicted RBP11.69□□□□□ -0.54
SMG1-208ENST00000563448 TMOD4Q9NZQ9 345 aa11.69□□□□□ -0.54
SMG1-208ENST00000563448 TFIP11Q9UBB9 837 aaKnown RBP11.69□□□□□ -0.54
SMG1-208ENST00000563448 ESYT2A0FGR8 921 aa11.68□□□□□ -0.54
SMG1-208ENST00000563448 M0R2N6 131 aa11.68□□□□□ -0.54
SMG1-208ENST00000563448 KIF3CO14782 793 aa11.68□□□□□ -0.54
SMG1-208ENST00000563448 CALML3P27482 149 aa11.68□□□□□ -0.54
SMG1-208ENST00000563448 GJA5P36382 358 aa11.68□□□□□ -0.54
SMG1-208ENST00000563448 NOM1Q5C9Z4 860 aaKnown RBP11.68□□□□□ -0.54
SMG1-208ENST00000563448 EARS2Q5JPH6 523 aaKnown RBP11.68□□□□□ -0.54
SMG1-208ENST00000563448 PPP1R18Q6NYC8 613 aa11.68□□□□□ -0.54
SMG1-208ENST00000563448 SAMD1Q6SPF0 538 aaPredicted RBP11.68□□□□□ -0.54
SMG1-208ENST00000563448 C2orf69Q8N8R5 385 aa11.68□□□□□ -0.54
SMG1-208ENST00000563448 PRPF38AQ8NAV1 312 aaKnown RBP11.68□□□□□ -0.54
SMG1-208ENST00000563448 AMNQ9BXJ7 453 aa11.68□□□□□ -0.54
SMG1-208ENST00000563448 GDPD2Q9HCC8 539 aa11.68□□□□□ -0.54
SMG1-208ENST00000563448 BRMS1Q9HCU9 246 aa11.68□□□□□ -0.54
SMG1-208ENST00000563448 KCNH4Q9UQ05 1017 aa11.68□□□□□ -0.54
SMG1-208ENST00000563448 A0A0G2JLL6 359 aaPredicted RBP11.67□□□□□ -0.54
SMG1-208ENST00000563448 FAM205CA6NFA0 338 aa11.67□□□□□ -0.54
SMG1-208ENST00000563448 CXCL11O14625 94 aa11.67□□□□□ -0.54
SMG1-208ENST00000563448 FLOT1O75955 427 aa11.67□□□□□ -0.54
SMG1-208ENST00000563448 TAL1P17542 331 aaPredicted RBP11.67□□□□□ -0.54
SMG1-208ENST00000563448 NCLP19338 710 aaKnown RBP11.67□□□□□ -0.54
SMG1-208ENST00000563448 KRT85P78386 507 aa11.67□□□□□ -0.54
SMG1-208ENST00000563448 GALNT17Q6IS24 598 aa11.67□□□□□ -0.54
SMG1-208ENST00000563448 CATSPERGQ6ZRH7 1159 aa11.67□□□□□ -0.54
SMG1-208ENST00000563448 PRRT2Q7Z6L0 340 aaPredicted RBP11.67□□□□□ -0.54
SMG1-208ENST00000563448 FBXO11Q86XK2 927 aa11.67□□□□□ -0.54
SMG1-208ENST00000563448 SLC10A4Q96EP9 437 aa11.67□□□□□ -0.54
SMG1-208ENST00000563448 FTOQ9C0B1 505 aaKnown RBP eCLIP11.67□□□□□ -0.54
SMG1-208ENST00000563448 C6orf50Q9HD87 102 aa11.67□□□□□ -0.54
SMG1-208ENST00000563448 PPP1R9AQ9ULJ8 1098 aa11.67□□□□□ -0.54
SMG1-208ENST00000563448 PCDHA6Q9UN73 950 aa11.67□□□□□ -0.54
SMG1-208ENST00000563448 PCDHA8Q9Y5H6 950 aa11.67□□□□□ -0.54
SMG1-208ENST00000563448 FIBPO43427 364 aa11.67□□□□□ -0.54
SMG1-208ENST00000563448 GNA11P29992 359 aa11.67□□□□□ -0.54
SMG1-208ENST00000563448 TREML2Q5T2D2 321 aa11.67□□□□□ -0.54
SMG1-208ENST00000563448 CCDC174Q6PII3 467 aa11.67□□□□□ -0.54
SMG1-208ENST00000563448 RASGRP4Q8TDF6 673 aa11.67□□□□□ -0.54
SMG1-208ENST00000563448 ZNF396Q96N95 335 aaPredicted RBP11.67□□□□□ -0.54
SMG1-208ENST00000563448 USP28Q96RU2 1077 aa11.67□□□□□ -0.54
SMG1-208ENST00000563448 LMBRD1Q9NUN5 540 aa11.67□□□□□ -0.54
SMG1-208ENST00000563448 PCDHA1Q9Y5I3 950 aa11.67□□□□□ -0.54
SMG1-208ENST00000563448 ZNF536O15090 1300 aa11.66□□□□□ -0.54
SMG1-208ENST00000563448 PASKQ96RG2 1323 aa11.66□□□□□ -0.54
SMG1-208ENST00000563448 USP17L15C9J2P7 530 aa11.66□□□□□ -0.54
SMG1-208ENST00000563448 USP17L13C9JLJ4 530 aa11.66□□□□□ -0.54
SMG1-208ENST00000563448 USP17L11C9JVI0 530 aa11.66□□□□□ -0.54
SMG1-208ENST00000563448 USP17L18D6R9N7 530 aa11.66□□□□□ -0.54
SMG1-208ENST00000563448 USP17L22D6RA61 530 aa11.66□□□□□ -0.54
SMG1-208ENST00000563448 USP17L17D6RBQ6 530 aa11.66□□□□□ -0.54
SMG1-208ENST00000563448 USP17L19D6RCP7 530 aa11.66□□□□□ -0.54
SMG1-208ENST00000563448 USP17L20D6RJB6 530 aa11.66□□□□□ -0.54
SMG1-208ENST00000563448 DSG3P32926 999 aa11.66□□□□□ -0.54
SMG1-208ENST00000563448 TOB1P50616 345 aaPredicted RBP11.66□□□□□ -0.54
SMG1-208ENST00000563448 USP17L24Q0WX57 530 aa11.66□□□□□ -0.54
SMG1-208ENST00000563448 MOGSQ13724 837 aa11.66□□□□□ -0.54
SMG1-208ENST00000563448 USH1GQ495M9 461 aa11.66□□□□□ -0.54
SMG1-208ENST00000563448 GADL1Q6ZQY3 521 aa11.66□□□□□ -0.54
SMG1-208ENST00000563448 TMEM87AQ8NBN3 555 aa11.66□□□□□ -0.54
SMG1-208ENST00000563448 PROCA1Q8NCQ7 364 aaPredicted RBP11.66□□□□□ -0.54
SMG1-208ENST00000563448 RIC8AQ9NPQ8 531 aa11.66□□□□□ -0.54
SMG1-208ENST00000563448 ZNFX1Q9P2E3 1918 aaKnown RBP11.66□□□□□ -0.54
SMG1-208ENST00000563448 DDX11L8A8MPP1 907 aa11.65□□□□□ -0.54
SMG1-208ENST00000563448 GOLGA6L22H0YM25 854 aa11.65□□□□□ -0.54
SMG1-208ENST00000563448 PRPF40AO75400 957 aaKnown RBP11.65□□□□□ -0.54
SMG1-208ENST00000563448 ADCY7P51828 1080 aa11.65□□□□□ -0.54
SMG1-208ENST00000563448 CEBPZQ03701 1054 aaKnown RBP11.65□□□□□ -0.54
SMG1-208ENST00000563448 ATL3Q6DD88 541 aa11.65□□□□□ -0.54
SMG1-208ENST00000563448 ATG4CQ96DT6 458 aa11.65□□□□□ -0.54
SMG1-208ENST00000563448 WNK4Q96J92 1243 aa11.65□□□□□ -0.54
SMG1-208ENST00000563448 SLC38A10Q9HBR0 1119 aa11.65□□□□□ -0.54
SMG1-208ENST00000563448 CFAP45Q9UL16 551 aa11.65□□□□□ -0.54
SMG1-208ENST00000563448 ADAMTS5Q9UNA0 930 aa11.65□□□□□ -0.54
SMG1-208ENST00000563448 CLIC4Q9Y696 253 aa11.65□□□□□ -0.54
SMG1-208ENST00000563448 LCTP09848 1927 aa11.65□□□□□ -0.54
SMG1-208ENST00000563448 CLK2P49760 499 aaKnown RBP11.65□□□□□ -0.54
SMG1-208ENST00000563448 COG2Q14746 738 aa11.65□□□□□ -0.54
SMG1-208ENST00000563448 PIK3AP1Q6ZUJ8 805 aa11.65□□□□□ -0.54
SMG1-208ENST00000563448 LEO1Q8WVC0 666 aaPredicted RBP11.65□□□□□ -0.54
SMG1-208ENST00000563448 TMEM260Q9NX78 707 aa11.65□□□□□ -0.54
SMG1-208ENST00000563448 RTEL1Q9NZ71 1219 aa11.65□□□□□ -0.54
SMG1-208ENST00000563448 BIN2Q9UBW5 565 aaPredicted RBP11.65□□□□□ -0.54
SMG1-208ENST00000563448 VWA5AO00534 786 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 OPLAHO14841 1288 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 ICAM1P05362 532 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 HOXA7P31268 230 aaPredicted RBP11.64□□□□□ -0.55
SMG1-208ENST00000563448 NBR1Q14596 966 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 UBE2SQ16763 222 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 RILPL1Q5EBL4 403 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 REPS2Q8NFH8 660 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 BICD2Q8TD16 824 aa11.64□□□□□ -0.55
SMG1-208ENST00000563448 AGBL1Q96MI9 1066 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms