RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 SCARF2Q96GP6 870 aaPredicted RBP6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 CENPOQ9BU64 300 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 ALDH8A1Q9H2A2 487 aaPredicted RBP6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 SLC12A5Q9H2X9 1139 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 LGR6Q9HBX8 967 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 DZANK1Q9NVP4 752 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 FNIP2Q9P278 1114 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 TRAK1Q9UPV9 953 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 DGKBQ9Y6T7 804 aa6.29□□□□□ -1.4
VPS35P1-201ENST00000563400 FRMPD2Q68DX3 1309 aaPredicted RBP6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 ADGRL2O95490 1459 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 ZMYM3Q14202 1370 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 KHNYNO15037 678 aaKnown RBP6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 SNX2O60749 519 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 DNAJC8O75937 253 aaPredicted RBP6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 FBXO21O94952 628 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 THBS1P07996 1170 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 PF4V1P10720 104 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 IDH3AP50213 366 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 UBAP2LQ14157 1087 aaKnown RBP6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 MPP2Q14168 576 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 GBX1Q14549 363 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 TUBB8Q3ZCM7 444 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 ARHGAP29Q52LW3 1261 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 SAMD5Q5TGI4 173 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 JAKMIP3Q5VZ66 844 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 CFAP161Q6P656 301 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 REC114Q7Z4M0 266 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 SRLQ86TD4 932 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 REXO1Q8N1G1 1221 aaKnown RBP6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 LRRC47Q8N1G4 583 aaKnown RBP6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 ZNF280CQ8ND82 737 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 WHAMMQ8TF30 809 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 CLIP3Q96DZ5 547 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 LRGUKQ96M69 825 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 MTFR1LQ9H019 292 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 FNDC3AQ9Y2H6 1198 aaKnown RBP6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 RTCBQ9Y3I0 505 aaKnown RBP6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 DNMT1P26358 1616 aaKnown RBP6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 SETD5Q9C0A6 1442 aa6.28□□□□□ -1.4
VPS35P1-201ENST00000563400 PPRC1Q5VV67 1664 aaKnown RBP6.27□□□□□ -1.4
VPS35P1-201ENST00000563400 COL17A1Q9UMD9 1497 aaPredicted RBP6.27□□□□□ -1.41
VPS35P1-201ENST00000563400 RICTORQ6R327 1708 aa6.27□□□□□ -1.41
VPS35P1-201ENST00000563400 A6NCN8 305 aa6.27□□□□□ -1.41
VPS35P1-201ENST00000563400 NEMP1O14524 444 aa6.27□□□□□ -1.41
VPS35P1-201ENST00000563400 FAM157BP0CG42 384 aa6.27□□□□□ -1.41
VPS35P1-201ENST00000563400 NEK4P51957 841 aa6.27□□□□□ -1.41
VPS35P1-201ENST00000563400 LAMC2Q13753 1193 aa6.27□□□□□ -1.41
VPS35P1-201ENST00000563400 DHCR24Q15392 516 aa6.27□□□□□ -1.41
VPS35P1-201ENST00000563400 ZC3H12BQ5HYM0 836 aaKnown RBP6.27□□□□□ -1.41
VPS35P1-201ENST00000563400 PPM1KQ8N3J5 372 aa6.27□□□□□ -1.41
VPS35P1-201ENST00000563400 NLRC4Q9NPP4 1024 aa6.27□□□□□ -1.41
VPS35P1-201ENST00000563400 NDFIP2Q9NV92 336 aa6.27□□□□□ -1.41
VPS35P1-201ENST00000563400 INTS7Q9NVH2 962 aaKnown RBP6.27□□□□□ -1.41
VPS35P1-201ENST00000563400 KLHL11Q9NVR0 708 aa6.27□□□□□ -1.41
VPS35P1-201ENST00000563400 PCDHB10Q9UN67 800 aa6.27□□□□□ -1.41
VPS35P1-201ENST00000563400 DIS3Q9Y2L1 958 aaKnown RBP6.27□□□□□ -1.41
VPS35P1-201ENST00000563400 SPEF1Q9Y4P9 236 aa6.27□□□□□ -1.41
VPS35P1-201ENST00000563400 ARHGEF40Q8TER5 1519 aa6.27□□□□□ -1.41
VPS35P1-201ENST00000563400 HFM1A2PYH4 1435 aa6.27□□□□□ -1.41
VPS35P1-201ENST00000563400 ABHD14A-ACY1A0A1B0GW23 586 aa6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 DCDC2BA2VCK2 349 aa6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 F5H423 210 aaPredicted RBP6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 TGFBR3LH3BV60 316 aa6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 SUSD5O60279 629 aa6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 ARHGEF15O94989 841 aa6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 MAPTP10636 758 aaKnown RBP6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 IMPDH2P12268 514 aa6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 DDX10Q13206 875 aaKnown RBP6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 FAM182BQ5T319 152 aa6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 RASIP1Q5U651 963 aa6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 MZT2AQ6P582 158 aa6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 NKAPQ8N5F7 415 aaKnown RBP6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 C19orf47Q8N9M1 422 aaKnown RBP6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 C7orf43Q8WVR3 580 aa6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 POF1BQ8WVV4 589 aa6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 ACDQ96AP0 544 aa6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 CDC6Q99741 560 aa6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 NAA15Q9BXJ9 866 aaKnown RBP6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 SAP30BPQ9UHR5 308 aaKnown RBP6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 SALL4Q9UJQ4 1053 aa6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 PCDHB14Q9Y5E9 798 aa6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 NPATQ14207 1427 aa6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 PLXNC1O60486 1568 aa6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 ARHGEF12Q9NZN5 1544 aa6.26□□□□□ -1.41
VPS35P1-201ENST00000563400 OIP5O43482 229 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 BRINP1O60477 761 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 KPNA6O60684 536 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 MAP3K6O95382 1288 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 CYP2E1P05181 493 aaPredicted RBP6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 TNP2Q05952 138 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 TRIM14Q14142 442 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 ZNF460Q14592 562 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 ZYXQ15942 572 aaKnown RBP6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 ATP13A4Q4VNC1 1196 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 VHLLQ6RSH7 139 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 IGF2-ASQ6U949 168 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 ANKLE2Q86XL3 938 aa6.25□□□□□ -1.41
VPS35P1-201ENST00000563400 AHI1Q8N157 1196 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms