RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 ALX1Q15699 326 aa18.67■□□□□ 0.58
CLK3-211ENST00000563297 C9orf50Q5SZB4 431 aa18.67■□□□□ 0.58
CLK3-211ENST00000563297 CCSAPQ6IQ19 270 aaPredicted RBP18.67■□□□□ 0.58
CLK3-211ENST00000563297 RCSD1Q6JBY9 416 aa18.67■□□□□ 0.58
CLK3-211ENST00000563297 FAM160B2Q86V87 743 aa18.67■□□□□ 0.58
CLK3-211ENST00000563297 ABHD16BQ9H3Z7 469 aa18.67■□□□□ 0.58
CLK3-211ENST00000563297 HELLSQ9NRZ9 838 aa18.67■□□□□ 0.58
CLK3-211ENST00000563297 HOMER2Q9NSB8 354 aa18.67■□□□□ 0.58
CLK3-211ENST00000563297 ANAPC4Q9UJX5 808 aa18.67■□□□□ 0.58
CLK3-211ENST00000563297 STX8Q9UNK0 236 aa18.67■□□□□ 0.58
CLK3-211ENST00000563297 STXBP5LQ9Y2K9 1186 aa18.67■□□□□ 0.58
CLK3-211ENST00000563297 ZNF536O15090 1300 aa18.67■□□□□ 0.58
CLK3-211ENST00000563297 SYNRGQ9UMZ2 1314 aa18.67■□□□□ 0.58
CLK3-211ENST00000563297 FGRP09769 529 aa18.66■□□□□ 0.58
CLK3-211ENST00000563297 ITGB8P26012 769 aa18.66■□□□□ 0.58
CLK3-211ENST00000563297 ACLYP53396 1101 aa18.66■□□□□ 0.58
CLK3-211ENST00000563297 IRX5P78411 483 aaPredicted RBP18.66■□□□□ 0.58
CLK3-211ENST00000563297 CNTN2Q02246 1040 aa18.66■□□□□ 0.58
CLK3-211ENST00000563297 KCNA10Q16322 511 aa18.66■□□□□ 0.58
CLK3-211ENST00000563297 PPP4R3BQ5MIZ7 849 aa18.66■□□□□ 0.58
CLK3-211ENST00000563297 FAM109BQ6ICB4 259 aaPredicted RBP18.66■□□□□ 0.58
CLK3-211ENST00000563297 KCTD1Q719H9 257 aa18.66■□□□□ 0.58
CLK3-211ENST00000563297 AGBL1Q96MI9 1066 aa18.66■□□□□ 0.58
CLK3-211ENST00000563297 ISY1Q9ULR0 285 aaKnown RBP18.66■□□□□ 0.58
CLK3-211ENST00000563297 A0A0C4DFX4 3053 aa18.65■□□□□ 0.58
CLK3-211ENST00000563297 ADCY6O43306 1168 aa18.65■□□□□ 0.58
CLK3-211ENST00000563297 RANBP6O60518 1105 aaKnown RBP18.65■□□□□ 0.58
CLK3-211ENST00000563297 CLTBP09497 229 aa18.65■□□□□ 0.58
CLK3-211ENST00000563297 NOVP48745 357 aa18.65■□□□□ 0.58
CLK3-211ENST00000563297 IKQ13123 557 aaPredicted RBP18.65■□□□□ 0.58
CLK3-211ENST00000563297 CCDC144BQ3MJ40 725 aa18.65■□□□□ 0.58
CLK3-211ENST00000563297 ARMCX2Q7L311 632 aa18.65■□□□□ 0.58
CLK3-211ENST00000563297 CCDC144CPQ8IYA2 1237 aa18.65■□□□□ 0.58
CLK3-211ENST00000563297 FAM133AQ8N9E0 248 aa18.65■□□□□ 0.58
CLK3-211ENST00000563297 ACAD9Q9H845 621 aa18.65■□□□□ 0.58
CLK3-211ENST00000563297 MYADML2A6NDP7 307 aa18.64■□□□□ 0.57
CLK3-211ENST00000563297 MOXD2PA6NHM9 499 aa18.64■□□□□ 0.57
CLK3-211ENST00000563297 KIAA0355O15063 1070 aa18.64■□□□□ 0.57
CLK3-211ENST00000563297 ORC4O43929 436 aa18.64■□□□□ 0.57
CLK3-211ENST00000563297 PQBP1O60828 265 aaKnown RBP18.64■□□□□ 0.57
CLK3-211ENST00000563297 FGAP02671 866 aa18.64■□□□□ 0.57
CLK3-211ENST00000563297 MCMDC2Q4G0Z9 681 aa18.64■□□□□ 0.57
CLK3-211ENST00000563297 ANKRD33Q7Z3H0 272 aa18.64■□□□□ 0.57
CLK3-211ENST00000563297 NUP133Q8WUM0 1156 aa18.64■□□□□ 0.57
CLK3-211ENST00000563297 FAM227BQ96M60 508 aa18.64■□□□□ 0.57
CLK3-211ENST00000563297 TOX2Q96NM4 488 aa18.64■□□□□ 0.57
CLK3-211ENST00000563297 TRERF1Q96PN7 1200 aa18.64■□□□□ 0.57
CLK3-211ENST00000563297 KATNBL1Q9H079 304 aa18.64■□□□□ 0.57
CLK3-211ENST00000563297 A1CFQ9NQ94 594 aaKnown RBP18.64■□□□□ 0.57
CLK3-211ENST00000563297 STARD7Q9NQZ5 370 aa18.64■□□□□ 0.57
CLK3-211ENST00000563297 RNF146Q9NTX7 359 aa18.64■□□□□ 0.57
CLK3-211ENST00000563297 PRR12Q9ULL5 1215 aa18.64■□□□□ 0.57
CLK3-211ENST00000563297 SOWAHBA6NEL2 793 aa18.63■□□□□ 0.57
CLK3-211ENST00000563297 ALAS1P13196 640 aa18.63■□□□□ 0.57
CLK3-211ENST00000563297 CST5P28325 142 aaPredicted RBP18.63■□□□□ 0.57
CLK3-211ENST00000563297 GJA9P57773 515 aa18.63■□□□□ 0.57
CLK3-211ENST00000563297 SNAP25P60880 206 aa18.63■□□□□ 0.57
CLK3-211ENST00000563297 FAAP100Q0VG06 881 aa18.63■□□□□ 0.57
CLK3-211ENST00000563297 TKFCQ3LXA3 575 aa18.63■□□□□ 0.57
CLK3-211ENST00000563297 RASGRP2Q7LDG7 609 aa18.63■□□□□ 0.57
CLK3-211ENST00000563297 TICAM2Q86XR7 235 aa18.63■□□□□ 0.57
CLK3-211ENST00000563297 A0A0D9SFI3 127 aa18.62■□□□□ 0.57
CLK3-211ENST00000563297 C6orf222P0C671 652 aaPredicted RBP18.62■□□□□ 0.57
CLK3-211ENST00000563297 RAG1P15918 1043 aa18.62■□□□□ 0.57
CLK3-211ENST00000563297 CCDC174Q6PII3 467 aa18.62■□□□□ 0.57
CLK3-211ENST00000563297 FAM161BQ96MY7 647 aa18.62■□□□□ 0.57
CLK3-211ENST00000563297 UPF3AQ9H1J1 476 aaKnown RBP18.62■□□□□ 0.57
CLK3-211ENST00000563297 TMEM39AQ9NV64 488 aa18.62■□□□□ 0.57
CLK3-211ENST00000563297 MTMR7Q9Y216 660 aa18.62■□□□□ 0.57
CLK3-211ENST00000563297 ELP1O95163 1332 aa18.61■□□□□ 0.57
CLK3-211ENST00000563297 DCDC2CA8MYV0 355 aa18.61■□□□□ 0.57
CLK3-211ENST00000563297 ASGR1P07306 291 aa18.61■□□□□ 0.57
CLK3-211ENST00000563297 HSPD1P10809 573 aaKnown RBP18.61■□□□□ 0.57
CLK3-211ENST00000563297 CDK7P50613 346 aa18.61■□□□□ 0.57
CLK3-211ENST00000563297 EPHB4P54760 987 aa18.61■□□□□ 0.57
CLK3-211ENST00000563297 MUM1L1Q5H9M0 696 aa18.61■□□□□ 0.57
CLK3-211ENST00000563297 GNASQ5JWF2 1037 aa18.61■□□□□ 0.57
CLK3-211ENST00000563297 PCSK9Q8NBP7 692 aaKnown RBP18.61■□□□□ 0.57
CLK3-211ENST00000563297 GLT1D1Q96MS3 346 aa18.61■□□□□ 0.57
CLK3-211ENST00000563297 GUCD1Q96NT3 240 aa18.61■□□□□ 0.57
CLK3-211ENST00000563297 LNPKQ9C0E8 428 aa18.61■□□□□ 0.57
CLK3-211ENST00000563297 SPC25Q9HBM1 224 aa18.61■□□□□ 0.57
CLK3-211ENST00000563297 CTAGE5O15320 804 aa18.6■□□□□ 0.57
CLK3-211ENST00000563297 NKX3-2P78367 333 aa18.6■□□□□ 0.57
CLK3-211ENST00000563297 NMIQ13287 307 aaPredicted RBP18.6■□□□□ 0.57
CLK3-211ENST00000563297 RRP12Q5JTH9 1297 aaKnown RBP18.6■□□□□ 0.57
CLK3-211ENST00000563297 TTBK2Q6IQ55 1244 aa18.6■□□□□ 0.57
CLK3-211ENST00000563297 ZNF589Q86UQ0 364 aaPredicted RBP18.6■□□□□ 0.57
CLK3-211ENST00000563297 DCAF4Q8WV16 495 aa18.6■□□□□ 0.57
CLK3-211ENST00000563297 TOMM22Q9NS69 142 aa18.6■□□□□ 0.57
CLK3-211ENST00000563297 TCP11L1Q9NUJ3 509 aa18.6■□□□□ 0.57
CLK3-211ENST00000563297 ASTN1O14525 1302 aa18.59■□□□□ 0.57
CLK3-211ENST00000563297 C11orf97A0A1B0GVM6 126 aaPredicted RBP18.59■□□□□ 0.57
CLK3-211ENST00000563297 ASB14A6NK59 587 aa18.59■□□□□ 0.57
CLK3-211ENST00000563297 DLL1O00548 723 aa18.59■□□□□ 0.57
CLK3-211ENST00000563297 SMAD3P84022 425 aaKnown RBP18.59■□□□□ 0.57
CLK3-211ENST00000563297 TNFAIP2Q03169 654 aa18.59■□□□□ 0.57
CLK3-211ENST00000563297 ZNF697Q5TEC3 545 aa18.59■□□□□ 0.57
CLK3-211ENST00000563297 BTNL9Q6UXG8 535 aa18.59■□□□□ 0.57
CLK3-211ENST00000563297 SMC5Q8IY18 1101 aa18.59■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms