RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 BMP8BP34820 402 aa12.15□□□□□ -0.46
CLK3-205ENST00000561673 MAGEA10P43363 369 aaPredicted RBP12.15□□□□□ -0.46
CLK3-205ENST00000561673 SNAP25P60880 206 aa12.15□□□□□ -0.46
CLK3-205ENST00000561673 IRX6P78412 446 aaPredicted RBP12.15□□□□□ -0.46
CLK3-205ENST00000561673 LRRC41Q15345 812 aa12.15□□□□□ -0.46
CLK3-205ENST00000561673 AKNAD1Q5T1N1 836 aa12.15□□□□□ -0.46
CLK3-205ENST00000561673 MAMDC4Q6UXC1 1216 aa12.15□□□□□ -0.46
CLK3-205ENST00000561673 MFSD6Q6ZSS7 791 aa12.15□□□□□ -0.46
CLK3-205ENST00000561673 MSL3Q8N5Y2 521 aaKnown RBP12.15□□□□□ -0.46
CLK3-205ENST00000561673 TMEM47Q9BQJ4 181 aa12.15□□□□□ -0.46
CLK3-205ENST00000561673 HOMER2Q9NSB8 354 aa12.15□□□□□ -0.46
CLK3-205ENST00000561673 DIAPH3Q9NSV4 1193 aa12.15□□□□□ -0.46
CLK3-205ENST00000561673 FBXO40Q9UH90 709 aa12.15□□□□□ -0.46
CLK3-205ENST00000561673 CNPY2Q9Y2B0 182 aa12.15□□□□□ -0.46
CLK3-205ENST00000561673 MYH4Q9Y623 1939 aa12.15□□□□□ -0.46
CLK3-205ENST00000561673 SYNGAP1Q96PV0 1343 aa12.14□□□□□ -0.47
CLK3-205ENST00000561673 TRIOBPQ9H2D6 2365 aa12.14□□□□□ -0.47
CLK3-205ENST00000561673 A0A1W2PPC1 479 aa12.14□□□□□ -0.47
CLK3-205ENST00000561673 KBTBD13C9JR72 458 aa12.14□□□□□ -0.47
CLK3-205ENST00000561673 RARBP10826 455 aa12.14□□□□□ -0.47
CLK3-205ENST00000561673 TOP1P11387 765 aaKnown RBP12.14□□□□□ -0.47
CLK3-205ENST00000561673 PDE4AP27815 886 aa12.14□□□□□ -0.47
CLK3-205ENST00000561673 ADCYAP1R1P41586 468 aa12.14□□□□□ -0.47
CLK3-205ENST00000561673 TTBK2Q6IQ55 1244 aa12.14□□□□□ -0.47
CLK3-205ENST00000561673 CCDC174Q6PII3 467 aa12.14□□□□□ -0.47
CLK3-205ENST00000561673 SLC39A5Q6ZMH5 540 aa12.14□□□□□ -0.47
CLK3-205ENST00000561673 ZNF467Q7Z7K2 595 aaPredicted RBP12.14□□□□□ -0.47
CLK3-205ENST00000561673 TBC1D10CQ8IV04 446 aa12.14□□□□□ -0.47
CLK3-205ENST00000561673 DCAF4Q8WV16 495 aa12.14□□□□□ -0.47
CLK3-205ENST00000561673 FGD4Q96M96 766 aa12.14□□□□□ -0.47
CLK3-205ENST00000561673 XPNPEP3Q9NQH7 507 aa12.14□□□□□ -0.47
CLK3-205ENST00000561673 PRR12Q9ULL5 1215 aa12.14□□□□□ -0.47
CLK3-205ENST00000561673 HIP1O00291 1037 aa12.13□□□□□ -0.47
CLK3-205ENST00000561673 ZNF213O14771 459 aa12.13□□□□□ -0.47
CLK3-205ENST00000561673 PGK1P00558 417 aa12.13□□□□□ -0.47
CLK3-205ENST00000561673 PCP11498 1178 aaKnown RBP12.13□□□□□ -0.47
CLK3-205ENST00000561673 AKR1A1P14550 325 aa12.13□□□□□ -0.47
CLK3-205ENST00000561673 SLC16A2P36021 539 aa12.13□□□□□ -0.47
CLK3-205ENST00000561673 RTP1P59025 263 aa12.13□□□□□ -0.47
CLK3-205ENST00000561673 CNTN2Q02246 1040 aa12.13□□□□□ -0.47
CLK3-205ENST00000561673 CCDC96Q2M329 555 aa12.13□□□□□ -0.47
CLK3-205ENST00000561673 FERMT2Q96AC1 680 aa12.13□□□□□ -0.47
CLK3-205ENST00000561673 LENG1Q96BZ8 264 aaPredicted RBP12.13□□□□□ -0.47
CLK3-205ENST00000561673 TRERF1Q96PN7 1200 aa12.13□□□□□ -0.47
CLK3-205ENST00000561673 ACAD9Q9H845 621 aa12.13□□□□□ -0.47
CLK3-205ENST00000561673 ZNFX1Q9P2E3 1918 aaKnown RBP12.13□□□□□ -0.47
CLK3-205ENST00000561673 NEDD4P46934 1319 aa12.12□□□□□ -0.47
CLK3-205ENST00000561673 ALAS1P13196 640 aa12.12□□□□□ -0.47
CLK3-205ENST00000561673 GSPT1P15170 499 aaKnown RBP12.12□□□□□ -0.47
CLK3-205ENST00000561673 MDM2Q00987 491 aaPredicted RBP12.12□□□□□ -0.47
CLK3-205ENST00000561673 C1QBPQ07021 282 aaKnown RBP12.12□□□□□ -0.47
CLK3-205ENST00000561673 ACVR2BQ13705 512 aa12.12□□□□□ -0.47
CLK3-205ENST00000561673 TKFCQ3LXA3 575 aa12.12□□□□□ -0.47
CLK3-205ENST00000561673 BTNL9Q6UXG8 535 aa12.12□□□□□ -0.47
CLK3-205ENST00000561673 FAM133AQ8N9E0 248 aa12.12□□□□□ -0.47
CLK3-205ENST00000561673 TTC14Q96N46 770 aa12.12□□□□□ -0.47
CLK3-205ENST00000561673 RNF41Q9H4P4 317 aaPredicted RBP12.12□□□□□ -0.47
CLK3-205ENST00000561673 GPCPD1Q9NPB8 672 aa12.12□□□□□ -0.47
CLK3-205ENST00000561673 A1CFQ9NQ94 594 aaKnown RBP12.12□□□□□ -0.47
CLK3-205ENST00000561673 RNF146Q9NTX7 359 aa12.12□□□□□ -0.47
CLK3-205ENST00000561673 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.12□□□□□ -0.47
CLK3-205ENST00000561673 FAM184BQ9ULE4 1060 aa12.12□□□□□ -0.47
CLK3-205ENST00000561673 ATP11BQ9Y2G3 1177 aa12.12□□□□□ -0.47
CLK3-205ENST00000561673 FRMPD2Q68DX3 1309 aaPredicted RBP12.11□□□□□ -0.47
CLK3-205ENST00000561673 FRMPD3Q5JV73 1810 aa12.11□□□□□ -0.47
CLK3-205ENST00000561673 POTEB2H3BUK9 544 aa12.11□□□□□ -0.47
CLK3-205ENST00000561673 SOX1O00570 391 aaPredicted RBP12.11□□□□□ -0.47
CLK3-205ENST00000561673 PDHBP11177 359 aa12.11□□□□□ -0.47
CLK3-205ENST00000561673 MUM1L1Q5H9M0 696 aa12.11□□□□□ -0.47
CLK3-205ENST00000561673 SYDE2Q5VT97 1194 aa12.11□□□□□ -0.47
CLK3-205ENST00000561673 ARMCX2Q7L311 632 aa12.11□□□□□ -0.47
CLK3-205ENST00000561673 RNF180Q86T96 592 aa12.11□□□□□ -0.47
CLK3-205ENST00000561673 CCDC144CPQ8IYA2 1237 aa12.11□□□□□ -0.47
CLK3-205ENST00000561673 ESR2Q92731 530 aa12.11□□□□□ -0.47
CLK3-205ENST00000561673 ZKSCAN3Q9BRR0 538 aa12.11□□□□□ -0.47
CLK3-205ENST00000561673 DSCC1Q9BVC3 393 aa12.11□□□□□ -0.47
CLK3-205ENST00000561673 UBE2OQ9C0C9 1292 aaKnown RBP12.11□□□□□ -0.47
CLK3-205ENST00000561673 IL25Q9H293 177 aa12.11□□□□□ -0.47
CLK3-205ENST00000561673 RANBP17Q9H2T7 1088 aaKnown RBP12.11□□□□□ -0.47
CLK3-205ENST00000561673 ABHD16BQ9H3Z7 469 aa12.11□□□□□ -0.47
CLK3-205ENST00000561673 ZHX1Q9UKY1 873 aaPredicted RBP12.11□□□□□ -0.47
CLK3-205ENST00000561673 CCPG1Q9ULG6 757 aa12.11□□□□□ -0.47
CLK3-205ENST00000561673 PHF24Q9UPV7 400 aa12.11□□□□□ -0.47
CLK3-205ENST00000561673 SOWAHBA6NEL2 793 aa12.1□□□□□ -0.47
CLK3-205ENST00000561673 ADCY6O43306 1168 aa12.1□□□□□ -0.47
CLK3-205ENST00000561673 ADAMTS4O75173 837 aa12.1□□□□□ -0.47
CLK3-205ENST00000561673 ICAM1P05362 532 aa12.1□□□□□ -0.47
CLK3-205ENST00000561673 ZNF543Q08ER8 600 aa12.1□□□□□ -0.47
CLK3-205ENST00000561673 SNX17Q15036 470 aa12.1□□□□□ -0.47
CLK3-205ENST00000561673 CCDC144BQ3MJ40 725 aa12.1□□□□□ -0.47
CLK3-205ENST00000561673 TRIM60Q495X7 471 aa12.1□□□□□ -0.47
CLK3-205ENST00000561673 TTC22Q5TAA0 569 aa12.1□□□□□ -0.47
CLK3-205ENST00000561673 C1orf53Q5VUE5 145 aa12.1□□□□□ -0.47
CLK3-205ENST00000561673 DGKHQ86XP1 1220 aa12.1□□□□□ -0.47
CLK3-205ENST00000561673 TDHQ8IZJ6 230 aa12.1□□□□□ -0.47
CLK3-205ENST00000561673 KLHDC9Q8NEP7 349 aa12.1□□□□□ -0.47
CLK3-205ENST00000561673 KATNBL1Q9H079 304 aa12.1□□□□□ -0.47
CLK3-205ENST00000561673 CYP39A1Q9NYL5 469 aa12.1□□□□□ -0.47
CLK3-205ENST00000561673 CTNNA3Q9UI47 895 aa12.1□□□□□ -0.47
CLK3-205ENST00000561673 SYNRGQ9UMZ2 1314 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms