RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 GMCL1Q96IK5 515 aa19.6■□□□□ 0.73
CLN3-208ENST00000561505 RAVER2Q9HCJ3 691 aaKnown RBP19.6■□□□□ 0.73
CLN3-208ENST00000561505 ZNF536O15090 1300 aa19.59■□□□□ 0.73
CLN3-208ENST00000561505 PRUNE2Q8WUY3 3088 aa19.59■□□□□ 0.73
CLN3-208ENST00000561505 RAD21O60216 631 aa19.59■□□□□ 0.73
CLN3-208ENST00000561505 ASGR1P07306 291 aa19.59■□□□□ 0.73
CLN3-208ENST00000561505 NOVP48745 357 aa19.59■□□□□ 0.73
CLN3-208ENST00000561505 IRX5P78411 483 aaPredicted RBP19.59■□□□□ 0.73
CLN3-208ENST00000561505 CCDC144BQ3MJ40 725 aa19.59■□□□□ 0.73
CLN3-208ENST00000561505 ARMCX2Q7L311 632 aa19.59■□□□□ 0.73
CLN3-208ENST00000561505 CPXCR1Q8N123 301 aa19.59■□□□□ 0.73
CLN3-208ENST00000561505 GPATCH3Q96I76 525 aa19.59■□□□□ 0.73
CLN3-208ENST00000561505 GLT1D1Q96MS3 346 aa19.59■□□□□ 0.73
CLN3-208ENST00000561505 ZHX1Q9UKY1 873 aaPredicted RBP19.59■□□□□ 0.73
CLN3-208ENST00000561505 MYH4Q9Y623 1939 aa19.59■□□□□ 0.73
CLN3-208ENST00000561505 TTC41PQ6P2S7 1318 aa19.58■□□□□ 0.73
CLN3-208ENST00000561505 ARVCFO00192 962 aa19.58■□□□□ 0.72
CLN3-208ENST00000561505 PRDM1O75626 825 aa19.58■□□□□ 0.72
CLN3-208ENST00000561505 BMP3P12645 472 aa19.58■□□□□ 0.72
CLN3-208ENST00000561505 ANKRD35Q8N283 1001 aa19.58■□□□□ 0.72
CLN3-208ENST00000561505 PI4K2BQ8TCG2 481 aa19.58■□□□□ 0.72
CLN3-208ENST00000561505 KIFC2Q96AC6 838 aa19.58■□□□□ 0.72
CLN3-208ENST00000561505 SPTBN5Q9NRC6 3674 aaKnown RBP19.58■□□□□ 0.72
CLN3-208ENST00000561505 CDH23Q9H251 3354 aa19.57■□□□□ 0.72
CLN3-208ENST00000561505 FOXP2O15409 715 aa19.57■□□□□ 0.72
CLN3-208ENST00000561505 CD4P01730 458 aa19.57■□□□□ 0.72
CLN3-208ENST00000561505 TDO2P48775 406 aa19.57■□□□□ 0.72
CLN3-208ENST00000561505 LRRFIP1Q32MZ4 808 aaKnown RBP19.57■□□□□ 0.72
CLN3-208ENST00000561505 TMEM240Q5SV17 173 aa19.57■□□□□ 0.72
CLN3-208ENST00000561505 ZMYM1Q5SVZ6 1142 aa19.57■□□□□ 0.72
CLN3-208ENST00000561505 SLFN13Q68D06 897 aa19.57■□□□□ 0.72
CLN3-208ENST00000561505 FAM126BQ8IXS8 530 aa19.57■□□□□ 0.72
CLN3-208ENST00000561505 CCDC144CPQ8IYA2 1237 aa19.57■□□□□ 0.72
CLN3-208ENST00000561505 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.57■□□□□ 0.72
CLN3-208ENST00000561505 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.57■□□□□ 0.72
CLN3-208ENST00000561505 A0A0U1RQG5 324 aaPredicted RBP19.56■□□□□ 0.72
CLN3-208ENST00000561505 C6orf222P0C671 652 aaPredicted RBP19.56■□□□□ 0.72
CLN3-208ENST00000561505 DNAJB2P25686 324 aa19.56■□□□□ 0.72
CLN3-208ENST00000561505 CNTN2Q02246 1040 aa19.56■□□□□ 0.72
CLN3-208ENST00000561505 PDE4BQ07343 736 aa19.56■□□□□ 0.72
CLN3-208ENST00000561505 TKFCQ3LXA3 575 aa19.56■□□□□ 0.72
CLN3-208ENST00000561505 TSHZ3Q63HK5 1081 aa19.56■□□□□ 0.72
CLN3-208ENST00000561505 FAM160B2Q86V87 743 aa19.56■□□□□ 0.72
CLN3-208ENST00000561505 STK11IPQ8N1F8 1099 aa19.56■□□□□ 0.72
CLN3-208ENST00000561505 CHURC1Q8WUH1 139 aa19.56■□□□□ 0.72
CLN3-208ENST00000561505 STAG1Q8WVM7 1258 aa19.56■□□□□ 0.72
CLN3-208ENST00000561505 SEC62Q99442 399 aaKnown RBP19.56■□□□□ 0.72
CLN3-208ENST00000561505 SPC25Q9HBM1 224 aa19.56■□□□□ 0.72
CLN3-208ENST00000561505 GNEQ9Y223 722 aaKnown RBP19.56■□□□□ 0.72
CLN3-208ENST00000561505 VCANP13611 3396 aa19.56■□□□□ 0.72
CLN3-208ENST00000561505 ASTN1O14525 1302 aa19.55■□□□□ 0.72
CLN3-208ENST00000561505 CHD9Q3L8U1 2897 aa19.55■□□□□ 0.72
CLN3-208ENST00000561505 SOWAHBA6NEL2 793 aa19.55■□□□□ 0.72
CLN3-208ENST00000561505 PPIGQ13427 754 aaKnown RBP eCLIP19.55■□□□□ 0.726e-7■■□□□ 12.5
CLN3-208ENST00000561505 GRIN2CQ14957 1233 aa19.55■□□□□ 0.72
CLN3-208ENST00000561505 GNASQ5JWF2 1037 aa19.55■□□□□ 0.72
CLN3-208ENST00000561505 LRRC47Q8N1G4 583 aaKnown RBP19.55■□□□□ 0.72
CLN3-208ENST00000561505 MORC4Q8TE76 937 aa19.55■□□□□ 0.72
CLN3-208ENST00000561505 NACAP1Q9BZK3 213 aa19.55■□□□□ 0.72
CLN3-208ENST00000561505 ACAD9Q9H845 621 aa19.55■□□□□ 0.72
CLN3-208ENST00000561505 A1CFQ9NQ94 594 aaKnown RBP19.55■□□□□ 0.72
CLN3-208ENST00000561505 SALL3Q9BXA9 1300 aa19.54■□□□□ 0.72
CLN3-208ENST00000561505 MCM3APO60318 1980 aa19.54■□□□□ 0.72
CLN3-208ENST00000561505 TMEM232C9JQI7 657 aa19.54■□□□□ 0.72
CLN3-208ENST00000561505 FGRP09769 529 aa19.54■□□□□ 0.72
CLN3-208ENST00000561505 TSPY3P0CV98 308 aa19.54■□□□□ 0.72
CLN3-208ENST00000561505 TSPY8P0CW00 308 aa19.54■□□□□ 0.72
CLN3-208ENST00000561505 FOSL2P15408 326 aa19.54■□□□□ 0.72
CLN3-208ENST00000561505 STAT2P52630 851 aa19.54■□□□□ 0.72
CLN3-208ENST00000561505 TFAP4Q01664 338 aa19.54■□□□□ 0.72
CLN3-208ENST00000561505 PPARAQ07869 468 aa19.54■□□□□ 0.72
CLN3-208ENST00000561505 PPP4R3BQ5MIZ7 849 aa19.54■□□□□ 0.72
CLN3-208ENST00000561505 SEZ6LQ9BYH1 1024 aa19.54■□□□□ 0.72
CLN3-208ENST00000561505 IL17RBQ9NRM6 502 aa19.54■□□□□ 0.72
CLN3-208ENST00000561505 CTDP1Q9Y5B0 961 aaPredicted RBP19.54■□□□□ 0.72
CLN3-208ENST00000561505 TTC28Q96AY4 2481 aa19.54■□□□□ 0.72
CLN3-208ENST00000561505 CABYRO75952 493 aa19.53■□□□□ 0.72
CLN3-208ENST00000561505 APPP05067 770 aa19.53■□□□□ 0.72
CLN3-208ENST00000561505 RCSD1Q6JBY9 416 aa19.53■□□□□ 0.72
CLN3-208ENST00000561505 AGBL1Q96MI9 1066 aa19.53■□□□□ 0.72
CLN3-208ENST00000561505 ZNF576Q9H609 170 aa19.53■□□□□ 0.72
CLN3-208ENST00000561505 ANAPC4Q9UJX5 808 aa19.53■□□□□ 0.72
CLN3-208ENST00000561505 Q9Y3F1 56 aa19.53■□□□□ 0.72
CLN3-208ENST00000561505 GRIN2DO15399 1336 aa19.52■□□□□ 0.72
CLN3-208ENST00000561505 ASB14A6NK59 587 aa19.52■□□□□ 0.72
CLN3-208ENST00000561505 ERC2O15083 957 aa19.52■□□□□ 0.72
CLN3-208ENST00000561505 TNFAIP2Q03169 654 aa19.52■□□□□ 0.72
CLN3-208ENST00000561505 CCDC174Q6PII3 467 aa19.52■□□□□ 0.72
CLN3-208ENST00000561505 CCDC129Q6ZRS4 1044 aa19.52■□□□□ 0.72
CLN3-208ENST00000561505 RNF146Q9NTX7 359 aa19.52■□□□□ 0.72
CLN3-208ENST00000561505 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.51■□□□□ 0.71
CLN3-208ENST00000561505 SLC3A2P08195 630 aaKnown RBP19.51■□□□□ 0.71
CLN3-208ENST00000561505 CSF2RAP15509 400 aa19.51■□□□□ 0.71
CLN3-208ENST00000561505 SLC1A4P43007 532 aa19.51■□□□□ 0.71
CLN3-208ENST00000561505 TAPT1Q6NXT6 567 aa19.51■□□□□ 0.71
CLN3-208ENST00000561505 TMEM199Q8N511 208 aa19.51■□□□□ 0.71
CLN3-208ENST00000561505 HERVK_113Q902F9 699 aa19.51■□□□□ 0.71
CLN3-208ENST00000561505 NAPBQ9H115 298 aa19.51■□□□□ 0.71
CLN3-208ENST00000561505 PCDHB15Q9Y5E8 787 aa19.51■□□□□ 0.71
CLN3-208ENST00000561505 TLR3O15455 904 aaKnown RBP19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms