RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 GNA11P29992 359 aa12.88□□□□□ -0.35
USP3-218ENST00000560202 HMGCS2P54868 508 aa12.88□□□□□ -0.35
USP3-218ENST00000560202 PPATQ06203 517 aa12.88□□□□□ -0.35
USP3-218ENST00000560202 LDLRAD1Q5T700 205 aa12.88□□□□□ -0.35
USP3-218ENST00000560202 ERO1BQ86YB8 467 aa12.88□□□□□ -0.35
USP3-218ENST00000560202 CNKSR2Q8WXI2 1034 aa12.88□□□□□ -0.35
USP3-218ENST00000560202 TNFRSF25Q93038 417 aa12.88□□□□□ -0.35
USP3-218ENST00000560202 KIFC2Q96AC6 838 aa12.88□□□□□ -0.35
USP3-218ENST00000560202 C6orf50Q9HD87 102 aa12.88□□□□□ -0.35
USP3-218ENST00000560202 FBXO28Q9NVF7 368 aa12.88□□□□□ -0.35
USP3-218ENST00000560202 TMOD4Q9NZQ9 345 aa12.88□□□□□ -0.35
USP3-218ENST00000560202 PAPPA2Q9BXP8 1791 aa12.88□□□□□ -0.35
USP3-218ENST00000560202 SPDYE5A6NIY4 337 aa12.87□□□□□ -0.35
USP3-218ENST00000560202 CEBPZQ03701 1054 aaKnown RBP12.87□□□□□ -0.35
USP3-218ENST00000560202 SH3D19Q5HYK7 790 aa12.87□□□□□ -0.35
USP3-218ENST00000560202 FBXO11Q86XK2 927 aa12.87□□□□□ -0.35
USP3-218ENST00000560202 LEO1Q8WVC0 666 aaPredicted RBP12.87□□□□□ -0.35
USP3-218ENST00000560202 SPATA32Q96LK8 384 aa12.87□□□□□ -0.35
USP3-218ENST00000560202 AMNQ9BXJ7 453 aa12.87□□□□□ -0.35
USP3-218ENST00000560202 FTOQ9C0B1 505 aaKnown RBP eCLIP12.87□□□□□ -0.35
USP3-218ENST00000560202 TANGO6Q9C0B7 1094 aa12.87□□□□□ -0.35
USP3-218ENST00000560202 RANBP17Q9H2T7 1088 aaKnown RBP12.87□□□□□ -0.35
USP3-218ENST00000560202 RPAP3Q9H6T3 665 aaPredicted RBP12.87□□□□□ -0.35
USP3-218ENST00000560202 PCDHA1Q9Y5I3 950 aa12.87□□□□□ -0.35
USP3-218ENST00000560202 UNCXA6NJT0 531 aa12.86□□□□□ -0.35
USP3-218ENST00000560202 M0R2N6 131 aa12.86□□□□□ -0.35
USP3-218ENST00000560202 RILPL1Q5EBL4 403 aa12.86□□□□□ -0.35
USP3-218ENST00000560202 EARS2Q5JPH6 523 aaKnown RBP12.86□□□□□ -0.35
USP3-218ENST00000560202 SAMD1Q6SPF0 538 aaPredicted RBP12.86□□□□□ -0.35
USP3-218ENST00000560202 PRPF38AQ8NAV1 312 aaKnown RBP12.86□□□□□ -0.35
USP3-218ENST00000560202 OTUD5Q96G74 571 aa12.86□□□□□ -0.35
USP3-218ENST00000560202 SLF1Q9BQI6 1058 aa12.86□□□□□ -0.35
USP3-218ENST00000560202 POLR3EQ9NVU0 708 aa12.86□□□□□ -0.35
USP3-218ENST00000560202 RTEL1Q9NZ71 1219 aa12.86□□□□□ -0.35
USP3-218ENST00000560202 RCOR1Q9UKL0 485 aa12.86□□□□□ -0.35
USP3-218ENST00000560202 PCDHA6Q9UN73 950 aa12.86□□□□□ -0.35
USP3-218ENST00000560202 PCDHA8Q9Y5H6 950 aa12.86□□□□□ -0.35
USP3-218ENST00000560202 FAM205CA6NFA0 338 aa12.86□□□□□ -0.35
USP3-218ENST00000560202 FLOT1O75955 427 aa12.86□□□□□ -0.35
USP3-218ENST00000560202 TOB1P50616 345 aaPredicted RBP12.86□□□□□ -0.35
USP3-218ENST00000560202 ADCY7P51828 1080 aa12.86□□□□□ -0.35
USP3-218ENST00000560202 FKBP1BP68106 108 aa12.86□□□□□ -0.35
USP3-218ENST00000560202 TRAF1Q13077 416 aa12.86□□□□□ -0.35
USP3-218ENST00000560202 NOM1Q5C9Z4 860 aaKnown RBP12.86□□□□□ -0.35
USP3-218ENST00000560202 ANO1Q5XXA6 986 aa12.86□□□□□ -0.35
USP3-218ENST00000560202 CHADLQ6NUI6 762 aa12.86□□□□□ -0.35
USP3-218ENST00000560202 BICD2Q8TD16 824 aa12.86□□□□□ -0.35
USP3-218ENST00000560202 RASGRP4Q8TDF6 673 aa12.86□□□□□ -0.35
USP3-218ENST00000560202 CLIC4Q9Y696 253 aa12.86□□□□□ -0.35
USP3-218ENST00000560202 ELP1O95163 1332 aa12.85□□□□□ -0.35
USP3-218ENST00000560202 OTOFQ9HC10 1997 aa12.85□□□□□ -0.35
USP3-218ENST00000560202 CXCL11O14625 94 aa12.85□□□□□ -0.35
USP3-218ENST00000560202 IRF6O14896 467 aa12.85□□□□□ -0.35
USP3-218ENST00000560202 TRAK2O60296 914 aa12.85□□□□□ -0.35
USP3-218ENST00000560202 GADD45BO75293 160 aaPredicted RBP12.85□□□□□ -0.35
USP3-218ENST00000560202 CELF2O95319 508 aaKnown RBP12.85□□□□□ -0.35
USP3-218ENST00000560202 NASPP49321 788 aaPredicted RBP12.85□□□□□ -0.35
USP3-218ENST00000560202 PPIL2Q13356 520 aa12.85□□□□□ -0.35
USP3-218ENST00000560202 USH1GQ495M9 461 aa12.85□□□□□ -0.35
USP3-218ENST00000560202 CCDC174Q6PII3 467 aa12.85□□□□□ -0.35
USP3-218ENST00000560202 PIK3AP1Q6ZUJ8 805 aa12.85□□□□□ -0.35
USP3-218ENST00000560202 OPTNQ96CV9 577 aa12.85□□□□□ -0.35
USP3-218ENST00000560202 GBA2Q9HCG7 927 aaPredicted RBP12.85□□□□□ -0.35
USP3-218ENST00000560202 RIC8AQ9NPQ8 531 aa12.85□□□□□ -0.35
USP3-218ENST00000560202 PPP1R9AQ9ULJ8 1098 aa12.85□□□□□ -0.35
USP3-218ENST00000560202 NOL7Q9UMY1 257 aaKnown RBP12.85□□□□□ -0.35
USP3-218ENST00000560202 PHIPQ8WWQ0 1821 aa12.85□□□□□ -0.35
USP3-218ENST00000560202 CCDC194A0A1B0GVG4 234 aa12.84□□□□□ -0.35
USP3-218ENST00000560202 YEATS4O95619 227 aa12.84□□□□□ -0.35
USP3-218ENST00000560202 ITGBL1O95965 494 aaPredicted RBP12.84□□□□□ -0.35
USP3-218ENST00000560202 MRPL12P52815 198 aaKnown RBP12.84□□□□□ -0.35
USP3-218ENST00000560202 SF3A1Q15459 793 aaKnown RBP12.84□□□□□ -0.35
USP3-218ENST00000560202 SKOR2Q2VWA4 1001 aaPredicted RBP12.84□□□□□ -0.35
USP3-218ENST00000560202 CATSPERGQ6ZRH7 1159 aa12.84□□□□□ -0.35
USP3-218ENST00000560202 REXO1Q8N1G1 1221 aaKnown RBP12.84□□□□□ -0.35
USP3-218ENST00000560202 C2orf69Q8N8R5 385 aa12.84□□□□□ -0.35
USP3-218ENST00000560202 LINC00301Q8NCQ3 95 aa12.84□□□□□ -0.35
USP3-218ENST00000560202 CUL5Q93034 780 aa12.84□□□□□ -0.35
USP3-218ENST00000560202 SLC10A4Q96EP9 437 aa12.84□□□□□ -0.35
USP3-218ENST00000560202 GLT8D2Q9H1C3 349 aa12.84□□□□□ -0.35
USP3-218ENST00000560202 PSTPIP2Q9H939 334 aa12.84□□□□□ -0.35
USP3-218ENST00000560202 KCNH4Q9UQ05 1017 aa12.84□□□□□ -0.35
USP3-218ENST00000560202 A0A0G2JLL6 359 aaPredicted RBP12.83□□□□□ -0.35
USP3-218ENST00000560202 USP17L15C9J2P7 530 aa12.83□□□□□ -0.35
USP3-218ENST00000560202 USP17L13C9JLJ4 530 aa12.83□□□□□ -0.35
USP3-218ENST00000560202 USP17L11C9JVI0 530 aa12.83□□□□□ -0.35
USP3-218ENST00000560202 USP17L18D6R9N7 530 aa12.83□□□□□ -0.35
USP3-218ENST00000560202 USP17L22D6RA61 530 aa12.83□□□□□ -0.35
USP3-218ENST00000560202 USP17L17D6RBQ6 530 aa12.83□□□□□ -0.35
USP3-218ENST00000560202 USP17L19D6RCP7 530 aa12.83□□□□□ -0.35
USP3-218ENST00000560202 USP17L20D6RJB6 530 aa12.83□□□□□ -0.35
USP3-218ENST00000560202 FDX1P10109 184 aa12.83□□□□□ -0.35
USP3-218ENST00000560202 ATP2B1P20020 1258 aa12.83□□□□□ -0.35
USP3-218ENST00000560202 TRAPPC10P48553 1259 aa12.83□□□□□ -0.35
USP3-218ENST00000560202 USP17L24Q0WX57 530 aa12.83□□□□□ -0.35
USP3-218ENST00000560202 STK38Q15208 465 aa12.83□□□□□ -0.35
USP3-218ENST00000560202 KRT25Q7Z3Z0 450 aa12.83□□□□□ -0.35
USP3-218ENST00000560202 PRRT2Q7Z6L0 340 aaPredicted RBP12.83□□□□□ -0.35
USP3-218ENST00000560202 SLC38A10Q9HBR0 1119 aa12.83□□□□□ -0.35
USP3-218ENST00000560202 BIN2Q9UBW5 565 aaPredicted RBP12.83□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms